bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-13_CDS_annotation_glimmer3.pl_2_4
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
xma:102228295 DNA topoisomerase 2-beta-like 43.1 0.18
pper:PRUPE_ppa020057mg hypothetical protein 41.2 0.37
ash:AL1_01540 Phage portal protein, SPP1 Gp6-like 40.0 1.3
clp:CPK_ORF00729 hypothetical protein 37.4 2.0
smf:Smon_0998 diaminopimelate epimerase (EC:5.1.1.7) 38.9 2.3
cpt:CpB0227 hypothetical protein 35.8 4.8
cpj:CPj0222 hypothetical protein 35.8 4.8
cpa:CP0543 hypothetical protein 35.8 4.8
cpn:CPn0222 hypothetical protein 35.8 4.8
daf:Desaf_2926 isoleucyl-tRNA synthetase 38.5 5.4
tru:101075827 DNA topoisomerase 2-beta-like 38.5 5.7
ola:101157229 DNA topoisomerase 2-beta-like 38.1 6.1
wko:WKK_04485 xylose isomerase 37.7 6.4
> xma:102228295 DNA topoisomerase 2-beta-like
Length=1603
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (43%), Gaps = 22/140 (16%)
Query 364 ILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFV 423
+L+ TPA I+ + +Y+ DS + V S L+ + + LH L +
Sbjct 953 MLQGTDKTPALISDYK--EYHTDSTVKFV-----VRMSEEKLAQAEAVGLHKVFKLQSSL 1005
Query 424 NCSSDV------------DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFI 471
C+S V ++ + + + L L+ YK ++W L S G+ SN+ RF+
Sbjct 1006 TCNSMVLFDHMGCLKRYDSVQDILKEFFELRLHYYKLRKDWLLGSLGAEASKLSNQARFV 1065
Query 472 ---IKTGIEYETKKNYESLR 488
I+ I E K E +R
Sbjct 1066 LEKIEGKISIENKSKRELIR 1085
> pper:PRUPE_ppa020057mg hypothetical protein
Length=236
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/105 (29%), Positives = 49/105 (47%), Gaps = 11/105 (10%)
Query 443 LYVYKFFRNWHL------PSFGSNLDAYSNRIRFI--IKTGIEYETKKNYESLRDVFNIR 494
L +Y+F N L P+ LD + R I + G+ Y +Y + ++ +
Sbjct 25 LLIYEFMPNRSLDTHRFDPARRPELD-WGRRFNIIQCVARGLLYLHHDSYLKVSNILSDE 83
Query 495 SANPDISDCMFALPANGQERDVLSNVSRETVQLLEQLRYRSAAYC 539
+ NP ISD + AL G + L+N + L QLR++ +AYC
Sbjct 84 NVNPKISDFLLALIVQGTQH--LTNTQKIVGTLASQLRFQCSAYC 126
> ash:AL1_01540 Phage portal protein, SPP1 Gp6-like.
Length=496
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/111 (32%), Positives = 50/111 (45%), Gaps = 25/111 (23%)
Query 97 FGDEYHHYIPVS--------EYQCDDSSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFL 148
FGD + Y + EY DS+ ++H +FE D EI+++ + W L
Sbjct 193 FGDRLYPYFDETGDMVAFSREYVVKDSAGVKHTYFETYT-----DTEIRKWTLTSNQWQL 247
Query 149 SIDAIRSFIHKTQALGKTDYPVAEQYGRDNLIPFLNYVDVQNYIKRLRKYL 199
+ + K Q +GK PV YGR P + + DVQN I RL K L
Sbjct 248 ----LDGYPKKNQ-IGK--IPVI--YGRQ---PAVEWEDVQNLIDRLEKLL 286
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 24 YTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIP 74
Y + + C +C +C + A+ S R S ++ + F+TLTYD++H+P
Sbjct 15 YRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP 65
> smf:Smon_0998 diaminopimelate epimerase (EC:5.1.1.7)
Length=260
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (43%), Gaps = 35/156 (22%)
Query 383 YNQDSVLSL-----VRAYYQYLQSNSILSDDDKIILHNARCL--TRFVNCSSD-----VD 430
YN D L+ +R Y YL +++++S DD+I++ + R +N D VD
Sbjct 55 YNADGSLAAMCGNGIRCYAHYLYNHNLVSKDDEILIDTLSGIKKIRIINTEKDNFLVSVD 114
Query 431 IESFINK--------LYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIKTGIEYETKK 482
+ + IN + R F Y+Y F H+ F +D F+ K G K
Sbjct 115 MNAAINTTEIKTIEAIDRTFKYIYTFTGTDHVVIF---VDKEELNEDFVTKYG------K 165
Query 483 NYESLRDVFNIRSANPDISDCMFALPANGQERDVLS 518
N E ++VF P ++ F N +E DV++
Sbjct 166 NIEQNKEVF------PKGTNVNFVYVKNREEVDVIT 195
> cpt:CpB0227 hypothetical protein
Length=113
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 24 YTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIP 74
Y + + C +C +C + A+ S R S ++ + F+TLTYD++H+P
Sbjct 15 YRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP 65
> cpj:CPj0222 hypothetical protein
Length=113
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 24 YTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIP 74
Y + + C +C +C + A+ S R S ++ + F+TLTYD++H+P
Sbjct 15 YRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP 65
> cpa:CP0543 hypothetical protein
Length=113
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 24 YTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIP 74
Y + + C +C +C + A+ S R S ++ + F+TLTYD++H+P
Sbjct 15 YRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP 65
> cpn:CPn0222 hypothetical protein
Length=113
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 24 YTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIP 74
Y + + C +C +C + A+ S R S ++ + F+TLTYD++H+P
Sbjct 15 YRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP 65
> daf:Desaf_2926 isoleucyl-tRNA synthetase
Length=939
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/137 (22%), Positives = 55/137 (40%), Gaps = 1/137 (1%)
Query 47 ASMRVKTAGSAFKYSYFVTLTYDNEHIPLMRCKVLHSEYEDVVG-ISGDIHFGDEYHHYI 105
A+ K + ++ K +Y V T IP +H EYE V+ + G++H
Sbjct 220 AAFSQKFSVASGKKAYLVIWTTTPWTIPSNMAVAVHPEYEYVLALVQGEVHVVASERLTA 279
Query 106 PVSEYQCDDSSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFLSIDAIRSFIHKTQALGK 165
+++ D L + + ++G I PV ++++D +H G+
Sbjct 280 LQKKFKWQDVEVLAVVTGKDLEGIKARHPFIDRVSPVVLADYVTLDTGTGLVHTAPGHGR 339
Query 166 TDYPVAEQYGRDNLIPF 182
DY +YG + L P
Sbjct 340 EDYETGLRYGLEVLSPL 356
> tru:101075827 DNA topoisomerase 2-beta-like
Length=1605
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 24/141 (17%)
Query 364 ILRAVHSTPARIARFGFIDYNQDSVLS-LVRAYYQYLQSNSILSDDDKIILHNARCLTRF 422
+L+ TPA I + +Y+ D+ + LVR S L+ + + LH L
Sbjct 953 MLQGSDKTPALINDYK--EYHTDTTVKFLVR------MSEEKLAQAESVGLHKVFKLQSS 1004
Query 423 VNCSSDV------------DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRF 470
+ C+S V ++ + + + L L+ YK ++W + S G+ SN+ RF
Sbjct 1005 LTCNSMVLFDHMGCMKRYESVQDILKEFFELRLHYYKLRKDWLVGSLGAEAAKLSNQARF 1064
Query 471 I---IKTGIEYETKKNYESLR 488
+ I+ + E K E +R
Sbjct 1065 VLEKIEGKVSIENKSKRELIR 1085
> ola:101157229 DNA topoisomerase 2-beta-like
Length=1599
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 22/140 (16%)
Query 364 ILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFV 423
+L+ TPA I + +Y+ DS + V S L+ + + LH L +
Sbjct 953 MLQGTDKTPALINDYK--EYHTDSTVKFV-----VRMSEEKLAQAEAVGLHKVFKLQSSL 1005
Query 424 NCSSDV------------DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFI 471
C+S V ++ + + + L L+ K ++W L S G+ SN+ RF+
Sbjct 1006 TCNSMVLFDHMGCLKRYDSVQDILKEFFELRLHYCKLRKDWLLGSLGAEAAKLSNQARFV 1065
Query 472 ---IKTGIEYETKKNYESLR 488
I+ I E K E +R
Sbjct 1066 LEKIEGKISIENKSKRELIR 1085
> wko:WKK_04485 xylose isomerase
Length=461
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (39%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
Query 430 DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIK 473
DI+ F N +Y L +Y+F +N LP+ G N DA + R F ++
Sbjct 318 DIDEFPNDIYEATLVMYEFIKNGGLPTGGLNFDAKARRSSFTME 361
Lambda K H a alpha
0.324 0.138 0.423 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1265641402932