bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-18_CDS_annotation_glimmer3.pl_2_3
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
eoi:ECO111_p2-096 hypothetical protein 41.2 0.36
elr:ECO55CA74_25813 hypothetical protein 39.7 1.3
tco:Theco_0684 growth inhibitor 36.2 4.2
dsq:DICSQDRAFT_53775 Pkinase-domain-containing protein 38.1 6.3
> eoi:ECO111_p2-096 hypothetical protein
Length=230
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/142 (27%), Positives = 64/142 (45%), Gaps = 24/142 (17%)
Query 197 KLSVNINGIVVNNPDD--------IVESQGSINPTSTIKI--VTTGIKEDNIKLIVKQNQ 246
K S +N I+ NN +V S GSI T ++++ + G D+ K+++ +Q
Sbjct 5 KFSELVNRILSNNHSHRRDMDVTIVVHSPGSIGSTPSVEVQSIHAGFDWDSGKVLIFPSQ 64
Query 247 YGRTVTMTPEELGDAEVASNTLTIKTTNIPTGGTWFVRSVYSTQRTSLEKYPLENLDTIR 306
T+TPE++ D T ++ G +W Y + LEK +E LD +
Sbjct 65 --PLTTLTPEQITDI----------TDSVRKGQSWHAYQEYKKHQEQLEKLSIE-LDAAK 111
Query 307 DKILLTPGD-TVFDISNASMSV 327
+I G+ T + NASM +
Sbjct 112 QRIAELDGNRTALAVENASMKL 133
> elr:ECO55CA74_25813 hypothetical protein
Length=237
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 24/142 (17%)
Query 197 KLSVNINGIVVNNPDD--------IVESQGSINPTSTIKI--VTTGIKEDNIKLIVKQNQ 246
K S +N I+ NN +V S GSI T ++++ + G D+ K+++ +Q
Sbjct 5 KFSELVNRILSNNHSHRRDMDVTIVVHSPGSIGSTPSVEVQSIHAGFDWDSGKVLIFPSQ 64
Query 247 YGRTVTMTPEELGDAEVASNTLTIKTTNIPTGGTWFVRSVYSTQRTSLEKYPLENLDTIR 306
T+TPE++ D T ++ G +W Y + LEK +E L+ +
Sbjct 65 --PLTTLTPEQITDI----------TDSVRKGQSWHAYQEYKKHQEQLEKLSIE-LEAAK 111
Query 307 DKILLTPGD-TVFDISNASMSV 327
+I G+ T + NASM +
Sbjct 112 QRIAELDGNRTALAVENASMKL 133
> tco:Theco_0684 growth inhibitor
Length=112
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query 329 PFTNFAKRNPQSVLNTSFTQYGLCLKTYNSDVYQNWINTEWIEGVTGINEASAVDVTDGK 388
PFT+ + + VL S T+Y N D+ I + E I +A D+ +GK
Sbjct 13 PFTDLSSTKQRPVLVLSNTKYNES----NQDIVVAAITSNLTEKEYSI-LITANDLDEGK 67
Query 389 LSMDALNLAQKVYNFLNRIAI 409
L +D+L A K+Y F N+I I
Sbjct 68 LKVDSLIRADKIYTFSNQIVI 88
> dsq:DICSQDRAFT_53775 Pkinase-domain-containing protein
Length=392
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (47%), Gaps = 14/96 (15%)
Query 346 FTQYGLCLKTYNSDVYQNWINTEWIEGVTGINEASAVDVTDGKLSMDALNLAQKV--YNF 403
TQY L +TYN D+ Q+++ W VT N+ + +S D ++L K+ YN
Sbjct 251 LTQYRLFFQTYNDDLLQSYVKQPWNRFVTADNKPN--------VSADGIDLLDKLLRYNH 302
Query 404 LNRI----AISGGTYRDWLETVYTGGNYMERCETPM 435
L+R+ A++ G + ++ C+ P+
Sbjct 303 LDRLTASEALAHGFFSTYILVCPPTATPCHACDRPI 338
Lambda K H a alpha
0.315 0.133 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1515346457754