bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-1_CDS_annotation_glimmer3.pl_2_3

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101314332  capsid protein VP1-like                              40.0    1.3
  sot:102601541  uncharacterized LOC102601541                         37.4    4.7
  dhd:Dhaf_2163  hypothetical protein                                 37.7    8.1
  xtr:549084  rab43; RAB43, member RAS oncogene family                37.0    8.8


> fve:101314332  capsid protein VP1-like
Length=421

 Score = 40.0 bits (92),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 0/56 (0%)

Query  380  LRQAEALQKWKEITQSVDTNYRDQIKAHFGVSVPQSEAHMAKYIGGVARNLDISEV  435
            LRQ+  +QK  E      T Y + I++HFGV+ P +     +Y+GG +  ++I+ +
Sbjct  311  LRQSFQIQKLLERDARGGTRYTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPI  366


> sot:102601541  uncharacterized LOC102601541
Length=173

 Score = 37.4 bits (85),  Expect = 4.7, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (52%), Gaps = 5/66 (8%)

Query  490  SGPDGQNLVTSVEDLPIPEFDNIGMESVPAVELMNSSLYSNVNSADKILGYSPRYYNWKT  549
            S PD    ++ +ED PIPE DN+      +++    S+ S  N +++    + +YYN   
Sbjct  47   SEPDSVTPISPLEDFPIPELDNLR-----SLQSQGGSILSETNCSEQDEFVATQYYNELV  101

Query  550  KIDRIH  555
             ID+ H
Sbjct  102  SIDKQH  107


> dhd:Dhaf_2163  hypothetical protein
Length=468

 Score = 37.7 bits (86),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 51/107 (48%), Gaps = 3/107 (3%)

Query  480  HAVPLLDYSISGPDGQNLVTSVEDLPIPEFDNIGMESVPAVELMNSSLYSNVNSADKILG  539
            H +  +    +GP G   +T  E   + ++   G +     ++  +++Y N  S  ++LG
Sbjct  52   HKITAVRQEDAGPAGSGPLTLAEMGQLAQYYLNGHDLAYGTKVSATAVYGNNQSLVQVLG  111

Query  540  YSPRYYNWKTKIDRIHGAFTTTLKD--WVAPIDDSFLYSLFGDSLST  584
             + RY  + T ID + G+F T   +   VA ID+    SLFG+   T
Sbjct  112  VNGRYRQFHT-IDLMAGSFLTPGHENQQVAVIDEQLARSLFGNCQVT  157


> xtr:549084  rab43; RAB43, member RAS oncogene family
Length=209

 Score = 37.0 bits (84),  Expect = 8.8, Method: Composition-based stats.
 Identities = 32/130 (25%), Positives = 63/130 (48%), Gaps = 18/130 (14%)

Query  286  GILPNSQFGDLAV-VDLGTISASGSKIPVGAYDGVNDSGTFKQFQTSSESYNGSSDKTTQ  344
            G+    Q   + V   + T+   G ++ +  +D        ++F+T ++SY  S++    
Sbjct  38   GVFAERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ----ERFRTITQSYYRSANGAII  93

Query  345  IY-----------PRNPDSISVRADSNLWAVL-GESSDLKLKFSVLALRQAEALQKWKEI  392
             Y           PR  + +   A SN+  +L G  SDL+ +F  +AL++AE L +  +I
Sbjct  94   AYDITKRKSFASVPRWIEDVKKYAGSNIVQLLIGNKSDLR-EFREVALQEAETLARHCDI  152

Query  393  TQSVDTNYRD  402
            T +++T+ +D
Sbjct  153  TCAIETSAKD  162



Lambda      K        H        a         alpha
   0.318    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1497089271516