bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-20_CDS_annotation_glimmer3.pl_2_2

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  dya:Dyak_GE20494  GE20494 gene product from transcript GE20494-RA   42.7    0.12
  tta:Theth_1654  S-layer domain-containing protein                   36.2    9.7


> dya:Dyak_GE20494  GE20494 gene product from transcript GE20494-RA
Length=3710

 Score = 42.7 bits (99),  Expect = 0.12, Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 100/233 (43%), Gaps = 40/233 (17%)

Query  132   AYAKTVAETKNIKADTSKKEGEVTSLNIDNFVKAASSDNAIKMSGLEVQLTKAQAEYTAE  191
             A A   A +KN++A  S K     +L     +    +  +I+++  E  L KA+  Y  E
Sbjct  2232  AIASVEALSKNLEAAASTKID--AALEQAQHILGQINGTSIELTPNEEVLKKARKLY--E  2287

Query  192   QKSKLISEINDINEHVNLLKAQISE---------TWSRTANLDSATVLNRTTA---ILNN  239
             + + L+S I + N+ +N+LK  I E          WS  ++  SA V  R  A     NN
Sbjct  2288  EVNTLVSPIKEQNKSLNVLKNDIGEFSDHLEDLFNWSEDSHAKSADVERRNVANQKAFNN  2347

Query  240   RRFDLECEEFARRVRETDAKVNLSDAEAKSILVTMYAKVNNIDTDTALKQANIRLTDAQK  299
              +FD   E+      +  A+ N++D  A + L         I+ D  L Q N +L   + 
Sbjct  2348  SKFDTVSEQ------KLQAEKNIND--AGNFL---------INGDLTLSQINQKLDSLRD  2390

Query  300   TQVEHYTNSIDIHRDAAVFKLQQDQKYDDAQRIVTVANQATQSLYHISQVASD  352
                E   N+++ + D  +   ++  K  DA     + +QA Q    ++  A D
Sbjct  2391  ALTE--LNAVNKNVDEELPVREEQHKEADA-----LTDQAEQKAAELAIKAQD  2436


> tta:Theth_1654  S-layer domain-containing protein
Length=394

 Score = 36.2 bits (82),  Expect = 9.7, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 45/79 (57%), Gaps = 4/79 (5%)

Query  173  KMSGLEVQLTKAQAEYTAEQKSKLISEINDINEHVNLLKAQISETWSRT----ANLDSAT  228
            K++ +E  +   QA+ +A+  S+L + IN++N++V+ +KA +S    R     ANL + T
Sbjct  174  KVAAVEKSVADLQAQVSAQVLSQLQASINNVNKNVDEVKASVSALTKRVETLEANLQALT  233

Query  229  VLNRTTAILNNRRFDLECE  247
            VL  + + L  R   LE +
Sbjct  234  VLRTSVSNLETRVASLEAK  252



Lambda      K        H        a         alpha
   0.311    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 713121273842