bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-20_CDS_annotation_glimmer3.pl_2_4

Length=760
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101314332  capsid protein VP1-like                              60.1    9e-07
  atr:s00056p00160320  AMTR_s00056p00160320; hypothetical protein     36.2    7.1
  scd:Spica_0064  hypothetical protein                                38.5    7.5


> fve:101314332  capsid protein VP1-like
Length=421

 Score = 60.1 bits (144),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 93/216 (43%), Gaps = 29/216 (13%)

Query  360  IKISAYPFRAYEAVYNAYIRNTRNNPFILNGKKTYNRFITNDAGGADSLTPKS---LFYA  416
            +  SA P RAY  +YN + R+          +   N  + +   G D+ TP +   L   
Sbjct  173  VSHSALPVRAYNLIYNQWFRD----------ENLQNSVVVDKGDGPDT-TPSTNYTLLRR  221

Query  417  NWQSDAYTSALTAPQQG-IAPLVGLTTYETKSINEA-GHEVTVVNTAIVDEDGNAFKVDF  474
              + D +TSAL  PQ+G  A  + L T    + + A G +V V++T      GN  K + 
Sbjct  222  GKRHDYFTSALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTT----QGNLIK-NM  276

Query  475  ESNGEALKGVNYTPLKAGEALNMQSLVSPVTSGIS--INDFRNVNAYQRYLELNQFRGFS  532
             S G        T LK G A     L + +++  +  IN  R     Q+ LE +   G  
Sbjct  277  YSTGSG------TSLKIGSATVATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTR  330

Query  533  YKEIIEGRFDVNVRYDALNMPEYLGGITRDIVVNPI  568
            Y EII   F V      L  PEYLGG +  I + PI
Sbjct  331  YTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPI  366


> atr:s00056p00160320  AMTR_s00056p00160320; hypothetical protein
Length=131

 Score = 36.2 bits (82),  Expect = 7.1, Method: Composition-based stats.
 Identities = 16/35 (46%), Positives = 25/35 (71%), Gaps = 2/35 (6%)

Query  94   SDNTEEYEPPYMNFSVNDYNEGGALSPSGLGDYFG  128
            SDN  +++P  +N  +ND+NE G+L+P+GL  Y G
Sbjct  36   SDNFPQFKPDEINGIMNDFNEPGSLAPTGL--YLG  68


> scd:Spica_0064  hypothetical protein
Length=957

 Score = 38.5 bits (88),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query  36   TPVFTELVPPNSSIRIKPEFGLRFMPMMFP---IQTKMKAYLSF----YKVPLRTLWKDY  88
            TP+F EL+PP+ +    P  G   +  M P   I  +  + ++F    Y   LR L+  Y
Sbjct  94   TPLFAELLPPSYASDYTPFIG--HISSMLPSLKIIIERTSEITFKTDTYIRDLRILFHRY  151

Query  89   MDFISSDNTEEYEPPYMNFSVNDYNEGGALSPSGLGDYFGIPTNQQVSSTPIGDFAVQFS  148
             DF++S N   YEP ++     D+     L    L D +    N+  S   +  F V+  
Sbjct  152  SDFLASHNL--YEPDWIRSPFQDHGRHWILILPDLTDDWESYENELSSQQSVFIFMVKDI  209

Query  149  QSKFDVDGHILRVN  162
            Q    +D H+  VN
Sbjct  210  Q----IDEHLHAVN  219



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1844802667116