bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-21_CDS_annotation_glimmer3.pl_2_7
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
pale:102881761 MED24; mediator complex subunit 24 33.9
nle:100602146 MED24; mediator complex subunit 24 33.5
tup:102493847 MED24; mediator complex subunit 24 33.5
hsa:9862 MED24, ARC100, CRSP100, CRSP4, DRIP100, THRAP4, TRAP1... 33.1 7.5
ggo:101142120 MED24; mediator of RNA polymerase II transcripti... 33.1 7.8
ptr:454642 MED24, THRAP4; mediator complex subunit 24 33.1
eus:EUTSA_v10000036mg hypothetical protein 33.1 7.8
acan:ACA1_069590 SET and MYND domain containing protein 33.1 7.9
pon:100441140 MED24; mediator complex subunit 24 33.1
pps:100969630 MED24; mediator complex subunit 24 33.1
mcc:699536 MED24, THRAP4; mediator complex subunit 24 33.1
cjc:100406586 MED24; mediator complex subunit 24 33.1
> pale:102881761 MED24; mediator complex subunit 24
Length=986
Score = 33.9 bits (76), Expect = 5.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (17%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNL----- 57
AAGE Q A E + K R A+L E WT I ++++KL +++ NL
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQL 211
Query 58 -TIGGKTGKLIR 68
+ K G LIR
Sbjct 212 RSQAEKCGTLIR 223
> nle:100602146 MED24; mediator complex subunit 24
Length=1010
Score = 33.5 bits (75), Expect = 6.6, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 198 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 253
> tup:102493847 MED24; mediator complex subunit 24
Length=987
Score = 33.5 bits (75), Expect = 6.7, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 207
> hsa:9862 MED24, ARC100, CRSP100, CRSP4, DRIP100, THRAP4, TRAP100;
mediator complex subunit 24
Length=976
Score = 33.1 bits (74), Expect = 7.5, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 139 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 194
> ggo:101142120 MED24; mediator of RNA polymerase II transcription
subunit 24 isoform 1
Length=989
Score = 33.1 bits (74), Expect = 7.8, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 207
> ptr:454642 MED24, THRAP4; mediator complex subunit 24
Length=989
Score = 33.1 bits (74), Expect = 7.8, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 207
> eus:EUTSA_v10000036mg hypothetical protein
Length=926
Score = 33.1 bits (74), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 0/70 (0%)
Query 19 KMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLTIGGKTGKLIREYTEKRMSET 78
K LE +KR+ + E +EL +E + I+ L V G+++I KT + + E TEK S++
Sbjct 477 KDLEGEKRSLAVSEETKELAEKSESSEQILDLTTVAGDISIQSKTPETVFESTEKVDSDS 536
Query 79 PPKNSTTVTQ 88
+ ++ T+
Sbjct 537 EKQAASDKTE 546
> acan:ACA1_069590 SET and MYND domain containing protein
Length=521
Score = 33.1 bits (74), Expect = 7.9, Method: Composition-based stats.
Identities = 23/58 (40%), Positives = 29/58 (50%), Gaps = 1/58 (2%)
Query 8 YAAGETQKAEAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLTIGGKTGK 65
YA Q+ E K E KKR E A AE E Q W E+++ KL Q L+ K G+
Sbjct 43 YAEEIEQRLETKSSEEKKRGE-AEAENTECQLWAELSHARAKLGQWHEALSAARKAGR 99
> pon:100441140 MED24; mediator complex subunit 24
Length=989
Score = 33.1 bits (74), Expect = 7.9, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 207
> pps:100969630 MED24; mediator complex subunit 24
Length=989
Score = 33.1 bits (74), Expect = 7.9, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 207
> mcc:699536 MED24, THRAP4; mediator complex subunit 24
Length=1051
Score = 33.1 bits (74), Expect = 8.3, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 198 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 253
> cjc:100406586 MED24; mediator complex subunit 24
Length=989
Score = 33.1 bits (74), Expect = 8.3, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 6/56 (11%)
Query 9 AAGETQKA------EAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLT 58
AAGE Q A E + K R A+L E WT I ++++KL +++ NL+
Sbjct 152 AAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLS 207
Lambda K H a alpha
0.310 0.124 0.345 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 125230604613