bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-25_CDS_annotation_glimmer3.pl_2_4

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ngr:NAEGRDRAFT_80435  hypothetical protein                          32.7    4.8
  gem:GM21_0821  type III restriction protein res subunit             31.6    10.0


> ngr:NAEGRDRAFT_80435  hypothetical protein
Length=676

 Score = 32.7 bits (73),  Expect = 4.8, Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (64%), Gaps = 2/36 (6%)

Query  20   KRRKILY-EMYLNL-NRQLVSLDGVDQPSLFDEYDR  53
            +RR  +Y + Y+ L  R L+S DG   PSLF EYD+
Sbjct  487  RRRASVYRKKYVQLFERHLISKDGTIDPSLFQEYDQ  522


> gem:GM21_0821  type III restriction protein res subunit
Length=1042

 Score = 31.6 bits (70),  Expect = 10.0, Method: Composition-based stats.
 Identities = 15/41 (37%), Positives = 26/41 (63%), Gaps = 2/41 (5%)

Query  8    IEVKGSDYGHLIKRRKILYEMYLNLNRQLVSLDGVDQPSLF  48
            ++V   D GH+I++  + +E Y N +R+ V  D  +QP+LF
Sbjct  249  LKVTAQDMGHIIEKFSVEFETYWN-SREFVPFDP-EQPTLF  287



Lambda      K        H        a         alpha
   0.320    0.143    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126758474451