bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-27_CDS_annotation_glimmer3.pl_2_6

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  rto:RTO_19290  hypothetical protein                                 32.7    3.1
  cci:CC1G_05894  pirin domain-containing protein domain-containi...  32.0    6.7


> rto:RTO_19290  hypothetical protein
Length=221

 Score = 32.7 bits (73),  Expect = 3.1, Method: Composition-based stats.
 Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 0/47 (0%)

Query  18   NNAGKFIDGLSNIVGAVTKFGSFRREGRSVIEQFDDNQGYSSTRQRY  64
            N   KF++  + I+G   +  SFR     ++ + +DNQ YS T   Y
Sbjct  79   NARCKFLNDENKIIGNELELKSFRELANKILNKSNDNQVYSETENEY  125


> cci:CC1G_05894  pirin domain-containing protein domain-containing 
protein
Length=266

 Score = 32.0 bits (71),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 32/62 (52%), Gaps = 1/62 (2%)

Query  2    DRWSQDPVKARWDRGINNAGKFIDGLSNIVGAVTKFGSFRREGRSVIEQFDDNQGYSSTR  61
            D+W++  V   W +GI  + +  DG + +  A+T + S   EG+++    +  +GY    
Sbjct  146  DQWAK-VVAPAWSKGIKTSERNGDGPAPVNSALTLYSSILGEGKALDRPLEGKKGYIHVI  204

Query  62   QR  63
            QR
Sbjct  205  QR  206



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128263368604