bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-28_CDS_annotation_glimmer3.pl_2_1
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 266 2e-80
cca:CCA00722 hypothetical protein 37.7 1.0
eus:EUTSA_v10012919mg hypothetical protein 37.7 6.4
> fve:101314332 capsid protein VP1-like
Length=421
Score = 266 bits (681), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/376 (46%), Positives = 223/376 (59%), Gaps = 41/376 (11%)
Query 4 VLPGDTFKIKTSKVVRLQTLITPMMDNLYLDTYFFFVPNRLVWSHWKEFNGENTQSAWLP 63
VLPGDTF + + RL T I P+MDNL+LD++FFFVPNRLVW++W +F GE A
Sbjct 77 VLPGDTFNVNVTMFGRLATPIFPVMDNLHLDSFFFFVPNRLVWNNWVKFMGEQDNPA--D 134
Query 64 TTEYEIPQITAPATGGWSIGTIADYLGIPT----GVPD-LSVNALPFRAYALVMNEWFRD 118
+ Y IPQ +PA GG+++G++ DY G+PT GV + +S +ALP RAY L+ N+WFRD
Sbjct 135 SISYSIPQQVSPA-GGYAVGSLQDYFGLPTAGQVGVSNTVSHSALPVRAYNLIYNQWFRD 193
Query 119 ENLTDPLVVPLDDATVAGVNTGAYVTDVAKGGLPFVAAKYHDYFTSCLPAPQKGPDVVIP 178
ENL + +VV D +T T + +G K HDYFTS LP PQKG
Sbjct 194 ENLQNSVVVDKGDGPDTTPSTN--YTLLRRG-------KRHDYFTSALPWPQKG------ 238
Query 179 GGTGMSVPVIPQADKVPSGLITMPYTATFLNETPVRSTTGIFFNDSGSQTNGVS--AGSS 236
GT +S+P+ A SG A+ + + +T G + S +G S GS+
Sbjct 239 -GTAVSLPLGTSAPIAFSG-------ASGSDVGVISTTQGNLIKNMYSTGSGTSLKIGSA 290
Query 237 EDALPVIDNLWAVGDGVATATINQLRLAFQIQKLYEKDARGGTRYTEILRSHFGVTSPDS 296
V L+A ATINQLR +FQIQKL E+DARGGTRYTEI+RSHFGV SPD+
Sbjct 291 T----VATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTRYTEIIRSHFGVASPDA 346
Query 297 RLQRPEYLGGNRIPIRINQI--VQQSATQEGSTPQGNPVGL-SLTSDNHGDFTKSFTEHG 353
RLQRPEYLGG PI I I + Q +TPQGN + + HG F++SF EHG
Sbjct 347 RLQRPEYLGGGSTPINIAPIAQTGGTGAQGTTTPQGNLAAFGTYMAKGHG-FSQSFVEHG 405
Query 354 FILGLMVARYDHTYQQ 369
++GL+ R D TYQQ
Sbjct 406 HVIGLVSVRADLTYQQ 421
> cca:CCA00722 hypothetical protein
Length=117
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
Query 491 RCTRPMPMYSIPGLIDH 507
RC RPMP+YS+ GLIDH
Sbjct 100 RCARPMPVYSVSGLIDH 116
> eus:EUTSA_v10012919mg hypothetical protein
Length=652
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/98 (31%), Positives = 44/98 (45%), Gaps = 9/98 (9%)
Query 295 DSRLQRPEYLGGNRIPIRINQIVQQSATQEGSTPQGNPVGLSLTSDNHGDFTKSFTEHGF 354
D+R P+ L GN + + +N I S QE T +G +T D+ DFT G
Sbjct 148 DTRKSHPDDLDGNHVGLNLNSI--NSVVQESLTGRG------ITIDSGVDFTAHVRYDGT 199
Query 355 ILGLMVARYDHTYQQGLDRMFSRKSRFDYYWPVFANIG 392
L + V+R Y+Q + +FSR Y P +G
Sbjct 200 FLSVYVSRNLEVYEQ-RNLVFSRAIDLSAYLPETVYVG 236
Lambda K H a alpha
0.318 0.136 0.417 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1117969690292