bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-35_CDS_annotation_glimmer3.pl_2_2
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
bco:Bcell_4208 glycoside hydrolase family protein 42.7 0.26
vdi:Vdis_1020 glycoside hydrolase family protein 42.0 0.35
sro:Sros_3705 hypothetical protein 41.6 0.53
cap:CLDAP_23780 phoA; alkaline phosphatase 38.9 3.0
hik:HifGL_000477 rpoA; DNA-directed RNA polymerase subunit alp... 38.1 5.4
hro:HELRODRAFT_170078 hypothetical protein 37.4 6.6
cmt:CCM_08162 autoinducer 2 sensor kinase/phosphatase luxQ 38.1 7.4
dai:Desaci_1566 methyl-accepting chemotaxis protein 37.7 8.3
> bco:Bcell_4208 glycoside hydrolase family protein
Length=1328
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query 326 SQFDVSRLKHTTSPLYLGSDRQYLGSNVIYQTTGAGDSSSPLGAFAGQASGGETFRQRSY 385
+ +V + H T+P S ++GSNV+Y +G + S + +A+G R +Y
Sbjct 781 TTLNVEKDTHITAPTLTRSGFAFVGSNVVYHFSGIAEPMSTIHFSVAEANGNND-RSLTY 839
Query 386 HFGENGYFVVMASLVPDVIYSRGM 409
GENG+F + L D+ YS G+
Sbjct 840 TVGENGFFNIDLPL-SDINYSEGV 862
> vdi:Vdis_1020 glycoside hydrolase family protein
Length=587
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (8%)
Query 47 FKPSAFVQAMPMNAPLVNGFKLCLEYFFVPDRLYNWELLMDNTGVTDDPDKVKFPQISSP 106
F P V ++A LVN +++ + Y P L+ W+ L+ N + D V++ P
Sbjct 132 FYPIYDVGPYLLHARLVNKYRVSVTYNLSPSLLWQWDDLLRNGVFIEGADHVEY---IGP 188
Query 107 AEYSTGTIKFSLNSQS--AARGDAARLANSIVQPGSLADYCGFPVGLFPTYDIVSDTDDR 164
+ G IK ++N+ S A G L + + P G+ + F YD++ R
Sbjct 189 WDSRVGLIKEAINTYSRLANEGVIEVLTSFLAHP-----IAGYLIEKFEVYDLLRWELSR 243
Query 165 NQFCALKLLGV 175
+ ++LGV
Sbjct 244 GKEVTRRVLGV 254
> sro:Sros_3705 hypothetical protein
Length=557
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/120 (32%), Positives = 46/120 (38%), Gaps = 25/120 (21%)
Query 210 VDYPVTMLRSFLDFVKRSPNPASAIGEWATSNPNGNPIFGTWSW----FCSRASIFQRCL 265
VDY T R +LD R+ A +W NP G W+W RA CL
Sbjct 102 VDYEATGRREYLD---RATEIAR---DWVRDNPRGTAGVSPWAWAEHPVALRAPALV-CL 154
Query 266 PPYYLESWLATSGYEDSEIKVD-----------LDADGKSISFRNIAAHSHIQRWLDLAL 314
+ + WLA S E +EI D LD D I+ I QRW LAL
Sbjct 155 SAHVKDDWLAASLAEHAEILADATLYKGGHNHGLDQD---IALLGIGCRFGEQRWTALAL 211
> cap:CLDAP_23780 phoA; alkaline phosphatase
Length=509
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/91 (32%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query 506 VDIDQIKNTGVIGVDVLKNLASELQQAYQAGYISFEQMDALVTLFSRIQALPEYTPYVLP 565
V +DQ+ G D +NL L++A GY+ L+ RIQA P+Y P VL
Sbjct 202 VHVDQVNGRGPA-RDDGRNL---LKEAADLGYVVIRTRAEFDALWERIQAEPDYAPMVLG 257
Query 566 N-AYNDVFADTSNQAQNFVLTCTFSMSCNRE 595
A +D+F DT+ + + SM +E
Sbjct 258 LFARDDIFNDTTEERLIALGLVDDSMKGTKE 288
> hik:HifGL_000477 rpoA; DNA-directed RNA polymerase subunit alpha
(EC:2.7.7.6)
Length=328
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (49%), Gaps = 10/103 (10%)
Query 472 GYVPAWSKVMQSTSRAHGRLTTDLKYWLLNR-DYGVD---IDQIKNTGVIGVDVLKNLAS 527
GYVPA S++ R GRL D Y + R Y V+ ++Q + + +++ N A
Sbjct 151 GYVPASSRIHTQEERPIGRLLVDACYSPVERITYNVEAARVEQRTDLDKLVIELETNGAL 210
Query 528 ELQQAY-QAGYISFEQMDALVTLFSRIQ-----ALPEYTPYVL 564
E ++A +A I EQ+DA V L Q PE+ P +L
Sbjct 211 EPEEAIRRAATILAEQLDAFVDLRDVRQPEIKEEKPEFDPILL 253
> hro:HELRODRAFT_170078 hypothetical protein
Length=212
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query 42 GDDLR---FKPSAFV-QAMPMNAPLVNGFKLCLEYFFVPDRLYNWELLMDNTGVTDDPDK 97
G+DL+ F P+ +A P++ +VNGF+ CL YF P NW + + D+
Sbjct 73 GNDLQINSFDPNNLNGEAQPIDE-IVNGFRTCLRYFLPP----NWHMDKETVSSLDNIQL 127
Query 98 VKFPQISSPAEYSTGTIKFSLNSQSAARGDAARLA 132
+FP +Y G K + Q A+ + RL+
Sbjct 128 SRFPLEDFFDQYEKGLKKLISSFQQDAQQSSHRLS 162
> cmt:CCM_08162 autoinducer 2 sensor kinase/phosphatase luxQ
Length=1379
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/83 (29%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query 233 AIGEWATSNPNGNPIF---------GTWSWFCSRASIFQRCLPPYYLESWLATSGYEDSE 283
A+ W S GNP F G W WF RA + R +E W T
Sbjct 571 ALSRWRASLETGNPYFMEYRCRNKEGEWRWFLGRA-LAVRNPETGEIEKWFGTCTDVHES 629
Query 284 IKVDLDADGKSISFRNIAAHSHI 306
I+ L A ++ AHSH+
Sbjct 630 IETKLAAKQTRQQLLSVIAHSHV 652
> dai:Desaci_1566 methyl-accepting chemotaxis protein
Length=687
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/98 (30%), Positives = 45/98 (46%), Gaps = 4/98 (4%)
Query 337 TSPLYLGSDRQYLGSNVIYQTTGAGDSSSPLGAFAGQASGGETFRQRSYHFGENGYFVVM 396
T+P G Q + SNV T G+ +G Q+ S G+ GY++++
Sbjct 167 TAPYVDGISHQMITSNVRSFTDANGNLIGTIGIDVQQSVISNMLS--SMKTGKTGYYMIV 224
Query 397 ASLVPDVIYSRGMDPFNREKTLGDVYVPALDNIAMEPL 434
+ VI + G DP N K L DV +P L+N+ + L
Sbjct 225 HN--TGVILADGNDPKNNFKKLSDVKIPGLENLLAKDL 260
Lambda K H a alpha
0.319 0.135 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1396674747207