bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-35_CDS_annotation_glimmer3.pl_2_5

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pkn:PKH_101110  hypothetical protein                                35.4    0.80
  ami:Amir_5172  sensor with HAMP domain                              33.5    3.7
  cput:CONPUDRAFT_51642  multidrug resistance-associated ABC tran...  32.7    6.5
  smm:Smp_135530  leishmanolysin-2 (M08 family)                       32.3    7.9
  umr:103678532  RNF20; ring finger protein 20, E3 ubiquitin prot...  32.0    9.6


> pkn:PKH_101110  hypothetical protein
Length=1515

 Score = 35.4 bits (80),  Expect = 0.80, Method: Composition-based stats.
 Identities = 19/56 (34%), Positives = 30/56 (54%), Gaps = 5/56 (9%)

Query  24    SMSGLTLLSGRQLTNTPPDKPEEESNPTNL-----KDNNKNTKQKNPYRKDTTFLQ  74
             S + + L+SG +  N PP  P  +S+         KDNN+N ++KN   +  +FLQ
Sbjct  1250  SSTDVNLISGHKSDNMPPKNPPSDSDKIEQGSHSNKDNNQNQEEKNFINEMVSFLQ  1305


> ami:Amir_5172  sensor with HAMP domain
Length=1023

 Score = 33.5 bits (75),  Expect = 3.7, Method: Composition-based stats.
 Identities = 23/66 (35%), Positives = 29/66 (44%), Gaps = 3/66 (5%)

Query  9    TRNGGSAQGKTK--KTRSMSGLTLLSGRQLTNTPPDKPEE-ESNPTNLKDNNKNTKQKNP  65
            T+NG +  G T      S SG    +GR L  TPP KPE   S P   +     T +  P
Sbjct  730  TQNGPTQNGATSGGAPVSESGWAAFAGRALDQTPPAKPEPGRSEPGRSEQGRSETARSEP  789

Query  66   YRKDTT  71
             R + T
Sbjct  790  GRSEAT  795


> cput:CONPUDRAFT_51642  multidrug resistance-associated ABC transporter
Length=1693

 Score = 32.7 bits (73),  Expect = 6.5, Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query  25   MSGLTLLSGRQLTNTPPDKPEEESNPTNLKDNNKNTKQKNPYRKDT  70
            + GL + +G    N  PDKPEE+S   N K N K  K      +DT
Sbjct  653  IEGLAIENGSFKWNAVPDKPEEDSTSKNAK-NGKKRKHGKDVSRDT  697


> smm:Smp_135530  leishmanolysin-2 (M08 family)
Length=1137

 Score = 32.3 bits (72),  Expect = 7.9, Method: Compositional matrix adjust.
 Identities = 17/38 (45%), Positives = 22/38 (58%), Gaps = 4/38 (11%)

Query  24   SMSGLTLLSGRQLTNTPPDKPEEESNPTNLKDNNKNTK  61
            S  G+ LL G+Q+TN     P+ ES P N  DNN N +
Sbjct  760  SSGGIELLVGKQVTNC----PDGESLPINAYDNNINVR  793


> umr:103678532  RNF20; ring finger protein 20, E3 ubiquitin protein 
ligase
Length=975

 Score = 32.0 bits (71),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query  5    VLLYTRNGGSAQGKTKKTRSMSGLTLLSGRQLTNTPPDKPEE-ESNPTNL  53
            VL Y R    AQ    KTR  SG  LL  +  T  P D+P E + +P +L
Sbjct  494  VLRYKRKLREAQSDLNKTRLRSGTALLQSQSSTEDPKDEPAELKQDPEDL  543



Lambda      K        H        a         alpha
   0.305    0.124    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125073504444