bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-39_CDS_annotation_glimmer3.pl_2_2

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ath:AT1G35240  ARF20; auxin response factor 20                      38.9
  ath:AT1G34390  ARF22; auxin response factor 22                      38.5
  ath:AT1G34310  ARF12; auxin response factor 12                      38.5
  paea:R70723_11095  cystathionine beta-lyase                         38.1    6.3


> ath:AT1G35240  ARF20; auxin response factor 20
Length=590

 Score = 38.9 bits (89),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 3/53 (6%)

Query  600  QELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGD---FAAGE  649
            QELL++++HG  WR   +Y+ T         W E+TT+     GD   F  GE
Sbjct  160  QELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGE  212


> ath:AT1G34390  ARF22; auxin response factor 22
Length=598

 Score = 38.5 bits (88),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 26/53 (49%), Gaps = 3/53 (6%)

Query  600  QELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGD---FAAGE  649
            QELL+ ++HG  WR N NY+ T         W  +TT+     GD   F  GE
Sbjct  162  QELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGE  214


> ath:AT1G34310  ARF12; auxin response factor 12
Length=593

 Score = 38.5 bits (88),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query  592  PNLDQ---IGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGD---F  645
            P+LD    +  QELL+ ++HG  WR N NY+ T         W  +TT+     GD   F
Sbjct  153  PSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVF  212

Query  646  AAGE  649
              GE
Sbjct  213  VRGE  216


> paea:R70723_11095  cystathionine beta-lyase
Length=394

 Score = 38.1 bits (87),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (47%), Gaps = 17/96 (18%)

Query  403  KTESGVQVYGRTTSQCGLGIRTYLSDRFNNWLNTEWIDGTNGINEITSVDVTSGLLTM--  460
            + ESG+  Y  T       I ++ S R N  L TEWI  + GI  +TS+ +   L T   
Sbjct  53   RVESGIYGYSVTGESYRQAIVSWYSRRHNWELQTEWITDSPGI--VTSLSLAVELFTQPG  110

Query  461  DALILQKKV----YDMLNR---------IAVSGGSY  483
            D +ILQ  V    YD++N          + +SGG Y
Sbjct  111  DEVILQSPVYYPFYDVINMNDRKVAKNPLILSGGRY  146



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1723287003652