bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-42_CDS_annotation_glimmer3.pl_2_1

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  rtr:RTCIAT899_CH18610  lytic murein transglycosylase                33.5    4.6
  pami:JCM7686_1895  GMP synthase (EC:6.3.5.2)                        33.5    5.2
  ecas:ECBG_02899  Rrf2 family protein                                32.7    5.3
  pbl:PAAG_00453  C2H2 transcription factor (AmdA)                    33.1    6.8
  pper:PRUPE_ppa026950mg  hypothetical protein                        32.7    8.5


> rtr:RTCIAT899_CH18610  lytic murein transglycosylase
Length=262

 Score = 33.5 bits (75),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (4%)

Query  25   DGSGSVDVLPGRPDVVVEPSDFDKGEKFNPEIEFDP--NSFSRMDKFDGLEVGQELI  79
            DG+G VD++  R D +   ++F +G  + P   + P  ++FS +  ++  +V Q+ I
Sbjct  196  DGNGRVDLVGSRADALASTANFLRGHGWQPGAGYQPGESNFSAIAGWNDAKVYQQAI  252


> pami:JCM7686_1895  GMP synthase (EC:6.3.5.2)
Length=519

 Score = 33.5 bits (75),  Expect = 5.2, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 9/67 (13%)

Query  13   YVSRGQRIMSVLDGSGSVDVLPGRPDVVV--EPSDFDKGEKFNPEIEFDPN------SFS  64
            ++S G R+  + DG   + + P  P  +V  E  +F  G +F+PE+   PN      +F+
Sbjct  135  WMSHGDRVTKIADGFEVIGISPNAPFAIVADETRNF-YGVQFHPEVHHTPNGKRLLENFT  193

Query  65   RMDKFDG  71
            R+  F G
Sbjct  194  RLAGFTG  200


> ecas:ECBG_02899  Rrf2 family protein
Length=141

 Score = 32.7 bits (73),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 22/76 (29%), Positives = 37/76 (49%), Gaps = 18/76 (24%)

Query  7   LEDAPAYVSRGQRIMSVLDGSGSVDVLPGRPDVVVEPSDFDKGEKFNPEIEFDPNSFSRM  66
           +E  PAYV   +RIMS L  +G ++   G+P               NP++  +PN  S +
Sbjct  34  VETNPAYV---RRIMSDLRIAGLIESQRGKP---------------NPKLTKEPNEISLL  75

Query  67  DKFDGLEVGQELIDSE  82
           D +  +E  Q L+ ++
Sbjct  76  DIYASVEKDQHLLHAD  91


> pbl:PAAG_00453  C2H2 transcription factor (AmdA)
Length=871

 Score = 33.1 bits (74),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 17/44 (39%), Positives = 21/44 (48%), Gaps = 0/44 (0%)

Query  36   RPDVVVEPSDFDKGEKFNPEIEFDPNSFSRMDKFDGLEVGQELI  79
            RPDV V PS   +  +FNP   +D N  S       LE  QE +
Sbjct  127  RPDVSVHPSQIAEPTQFNPSWGYDLNLLSHAASHVALEGQQEAV  170


> pper:PRUPE_ppa026950mg  hypothetical protein
Length=318

 Score = 32.7 bits (73),  Expect = 8.5, Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (15%)

Query  19  RIMSVLDGSGSVDVLP--GRPDVVVEPSDFDKGEKFNPEIEFD-------PNSFSRMDKF  69
           R +S LD S +   LP  G PD     S FD G+ F     FD       P+SF  +  F
Sbjct  5   RTLSSLDESDAFGTLPSFGEPDAFGTRSSFDVGDAFGTPSSFDESDAFGTPSSFGTLPSF  64

Query  70  D  70
           D
Sbjct  65  D  65



Lambda      K        H        a         alpha
   0.310    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129203694348