bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-43_CDS_annotation_glimmer3.pl_2_2

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  bam:Bamb_1193  hypothetical protein                                 38.1    0.30
  bced:DM42_393  hypothetical protein                                 37.0    0.91


> bam:Bamb_1193  hypothetical protein
Length=556

 Score = 38.1 bits (87),  Expect = 0.30, Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (57%), Gaps = 0/51 (0%)

Query  7    GALGTIGNVAGTVGTVANAVGALGNAFGAWGQVGQSQSQGGSTQQGGGSSQ  57
            G +  + NVAG  G VA+A G  G    A GQ G++   GG+  +GG +++
Sbjct  375  GEVADVANVAGKAGEVASAAGKTGEVAEAAGQAGKASDIGGAASKGGEATE  425


> bced:DM42_393  hypothetical protein
Length=580

 Score = 37.0 bits (84),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 21/47 (45%), Positives = 26/47 (55%), Gaps = 0/47 (0%)

Query  7    GALGTIGNVAGTVGTVANAVGALGNAFGAWGQVGQSQSQGGSTQQGG  53
            G L  + NVAG  G VANA G  G    A GQ G++   GG+  +GG
Sbjct  375  GELADVANVAGKTGEVANAAGKTGEVAEAAGQAGKASDIGGAAAKGG  421



Lambda      K        H        a         alpha
   0.309    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127433736605