bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-43_CDS_annotation_glimmer3.pl_2_3
Length=70
Score E
Sequences producing significant alignments: (Bits) Value
nno:NONO_c27320 acyl-CoA dehydrogenase 34.3 1.2
crb:CARUB_v10000554mg hypothetical protein 33.5 2.9
pyo:PY02637 splicing factor 32.7 5.5
pti:PHATRDRAFT_40219 hypothetical protein 32.7 5.7
pti:PHATRDRAFT_40623 hypothetical protein 32.3 6.3
bpy:Bphyt_6929 fimbrial protein 31.6 9.1
hoh:Hoch_5308 phosphate-selective porin O and P 32.0 9.3
> nno:NONO_c27320 acyl-CoA dehydrogenase
Length=340
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 16/56 (29%), Positives = 32/56 (57%), Gaps = 0/56 (0%)
Query 12 DIGKNAGNAIDNAIGAGRKAGEKLRGNMNKAMDNIKNGHGIDNITGNRNRAGGGAG 67
+I + + +D+ G ++GE+ G +++ + N +G G+ N+TG+ G GAG
Sbjct 6 EIDRELADLLDSVFGEYAESGERAPGELDRELWNRLDGLGLVNLTGDEAHGGSGAG 61
> crb:CARUB_v10000554mg hypothetical protein
Length=583
Score = 33.5 bits (75), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 0/48 (0%)
Query 22 DNAIGAGRKAGEKLRGNMNKAMDNIKNGHGIDNITGNRNRAGGGAGRR 69
D A +K ++L N+++A+ ++KN +D+ N+N + GG GR+
Sbjct 43 DQTSSAMQKRFQRLGRNVSEAIASLKNSLSLDSARDNQNASAGGGGRK 90
> pyo:PY02637 splicing factor
Length=583
Score = 32.7 bits (73), Expect = 5.5, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (2%)
Query 6 LQETLSDIGKNAGNAIDNAIGAGRKAGEKLRGNMNKAMDNIKNG-HGIDNI 55
L+E D+ + N DN GRK +L G +NK I NG +DNI
Sbjct 382 LEENPVDMSQEENNISDNKYIKGRKQKNQLHGKLNKNDSEISNGEETLDNI 432
> pti:PHATRDRAFT_40219 hypothetical protein
Length=942
Score = 32.7 bits (73), Expect = 5.7, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (61%), Gaps = 0/28 (0%)
Query 32 GEKLRGNMNKAMDNIKNGHGIDNITGNR 59
EKLRGN N+ DN +G+GI T R
Sbjct 104 AEKLRGNKNETQDNFSDGNGISYNTAER 131
> pti:PHATRDRAFT_40623 hypothetical protein
Length=631
Score = 32.3 bits (72), Expect = 6.3, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (61%), Gaps = 0/28 (0%)
Query 32 GEKLRGNMNKAMDNIKNGHGIDNITGNR 59
EKLRGN N+ DN +G+GI T R
Sbjct 37 AEKLRGNKNETQDNFSDGNGISYNTAER 64
> bpy:Bphyt_6929 fimbrial protein
Length=185
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (48%), Gaps = 4/69 (6%)
Query 2 TPLGLQETLSDIGKNAGNAIDNAIGAGRKAGEKLR----GNMNKAMDNIKNGHGIDNITG 57
TP L TL+ + A +A G A +L+ G ++KA+ + +NG +D +G
Sbjct 50 TPADLAVTLAPVSITALSATGEVAGTSSPADLQLKLTGCGTVSKAIASFENGPNVDQSSG 109
Query 58 NRNRAGGGA 66
N GG A
Sbjct 110 NLVNVGGTA 118
> hoh:Hoch_5308 phosphate-selective porin O and P
Length=402
Score = 32.0 bits (71), Expect = 9.3, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 30/63 (48%), Gaps = 2/63 (3%)
Query 3 PLGLQETLSDIGKN-AGNAIDNAIG-AGRKAGEKLRGNMNKAMDNIKNGHGIDNITGNRN 60
P QE +SD G G AI N G AGR G +K+ D ++ G N TG+R
Sbjct 150 PFSRQEIVSDFGSEYIGRAITNRFGGAGRDLGIIAHNGYDKSPDGLEWAFGAFNSTGDRA 209
Query 61 RAG 63
R G
Sbjct 210 RQG 212
Lambda K H a alpha
0.310 0.134 0.380 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 126668436524