bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-4_CDS_annotation_glimmer3.pl_2_8
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
har:HEAR2035 NADH dehydrogenase transmembrane protein (EC:1.6.... 40.4 0.31
axo:NH44784_010271 NADH dehydrogenase (EC:1.6.99.3) 40.4 0.31
bced:DM42_660 pyridine nucleotide-disulfide oxidoreductase fam... 40.4 0.31
pmos:O165_003240 NADH dehydrogenase 39.3 0.88
adl:AURDEDRAFT_170311 hypothetical protein 38.9 1.4
cin:100183406 myosin light polypeptide 6-like 35.4 6.9
rno:499229 similar to very large inducible GTPase 1 isoform A 36.6 7.3
axy:AXYL_02733 motA; chemotaxis protein MotA 35.8 8.0
> har:HEAR2035 NADH dehydrogenase transmembrane protein (EC:1.6.99.3)
Length=435
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query 164 RQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGAD 223
R EVN L+AE +E + + N +R+T D L+ AT T+ YFG + AF G
Sbjct 73 RPEVNTLMAE-VEGIDQDARQVILNNGMRQTYDTLVLATGATHAYFG-HDEWGAFAPGLK 130
Query 224 AFHDSSILRSRAGSASESYKQSAFDTKLQPWREALNSTNMIFNGIGSGLD 273
D++ +R R +A E ++++ P + A T +I G +G++
Sbjct 131 TLEDATTIRGRILAAFEEAERTS-----DPQQRAALQTFVIIGGGPTGVE 175
> axo:NH44784_010271 NADH dehydrogenase (EC:1.6.99.3)
Length=435
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query 164 RQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGAD 223
R EVN L+AE +E + + N +R+T D L+ AT T+ YFG + AF G
Sbjct 73 RPEVNTLMAE-VEGIDQDARQVILNNGMRQTYDTLVLATGATHAYFG-HDEWGAFAPGLK 130
Query 224 AFHDSSILRSRAGSASESYKQSAFDTKLQPWREALNSTNMIFNGIGSGLD 273
D++ +R R +A E ++++ P + A T +I G +G++
Sbjct 131 TLEDATTIRGRILAAFEEAERTS-----DPQQRAALQTFVIIGGGPTGVE 175
> bced:DM42_660 pyridine nucleotide-disulfide oxidoreductase family
protein
Length=435
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query 164 RQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGAD 223
R EVN L+AE +E + + N +R+T D L+ AT T+ YFG + AF G
Sbjct 73 RPEVNTLMAE-VEGIDQDARQVILNNGMRQTYDTLVLATGATHAYFG-HDEWGAFAPGLK 130
Query 224 AFHDSSILRSRAGSASESYKQSAFDTKLQPWREALNSTNMIFNGIGSGLD 273
D++ +R R +A E ++++ P + A T +I G +G++
Sbjct 131 TLEDATTIRGRILAAFEEAERTS-----DPQQRAALQTFVIIGGGPTGVE 175
> pmos:O165_003240 NADH dehydrogenase
Length=435
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/163 (27%), Positives = 73/163 (45%), Gaps = 13/163 (8%)
Query 113 SNNLLVANIANSLLDADTKTILNKYLDQQQQAELNVK--AANYEYLVMSGQLKRQEVNNL 170
+N L A + +++D + L Q A L+ A YL + R EVN L
Sbjct 24 ANQLAGAEVDVTIIDRRNHHLFQPLLYQVAGASLSTSEIAWPIRYLFRN----RPEVNTL 79
Query 171 IAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGADAFHDSSI 230
+AE +E + + N R+T D L+ AT T+ YFG + AF G D++
Sbjct 80 MAE-VEGIDQDARQVILNNGSRQTYDTLVLATGATHAYFG-HDEWGAFAPGLKTLEDATT 137
Query 231 LRSRAGSASESYKQSAFDTKLQPWREALNSTNMIFNGIGSGLD 273
+R R +A E ++++ P + A T +I G +G++
Sbjct 138 IRGRILAAFEEAERTS-----DPQQRAALQTFVIIGGGPTGVE 175
> adl:AURDEDRAFT_170311 hypothetical protein
Length=1380
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 42/171 (25%), Positives = 75/171 (44%), Gaps = 12/171 (7%)
Query 40 LASALKMMSEKKKTDIENLNMSD--LLRSQIWQNLGATDWRNASPEARAYNLSQGRRAAE 97
LAS +K+ + +L+ D +W+ L A D R A P ++ LS +AA
Sbjct 804 LASQMKIKQPRVFDGRADLDFFDQWCFEVDLWRTLNAIDARWAIPMVSSF-LSD--KAAR 860
Query 98 LGMASLEENLSNQRWSNNLLVANIANSLLDADTKTILNKYLDQQQQAELNVKAANYEYLV 157
M S+ +S++RW L + + D K +L K Q +Q + NV+ + +
Sbjct 861 FFMNSVI--MSDERWDFRKLYDALFDHCFPTDFKLLLRKKFAQARQGQRNVREFARDLKI 918
Query 158 MSGQL----KRQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNN 204
M+ + +RQ + L E + +Y R + + + T D L+ A +
Sbjct 919 MARRFPDVGERQLIQVLF-EGVHSYIRQKWHEFRYNVDEHTYDELVSAAEH 968
> cin:100183406 myosin light polypeptide 6-like
Length=150
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/61 (38%), Positives = 34/61 (56%), Gaps = 1/61 (2%)
Query 117 LVANIANSLLDADTKTILNKYLDQQQQAELNVKAANY-EYLVMSGQLKRQEVNNLIAEEI 175
LV ++ +L D T +NK L ++ ELN K + E+L M Q+KRQ V + I + I
Sbjct 30 LVGSLIRALGDDPTNADVNKVLGNPKKEELNSKTVTFEEFLPMLAQIKRQAVPSNIEDFI 89
Query 176 E 176
E
Sbjct 90 E 90
> rno:499229 similar to very large inducible GTPase 1 isoform
A
Length=2440
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 71/159 (45%), Gaps = 9/159 (6%)
Query 63 LLRSQIWQNLGATDWRNASPEARAYNLSQGRRAAELGMASLEENLSNQRWSNNLL----- 117
L RSQ N + + N E R+ L+ EL L E NQ W+N +
Sbjct 1849 LKRSQETLNNQKSQYENELLE-RSRKLALSVNGKELTDEELYEKF-NQLWTNWIHNVSSN 1906
Query 118 VANIANSLLDADTKTILNKYLDQQQQ--AELNVKAANYEYLVMSGQLKRQEVNNLIAEEI 175
V ++ +D D++ IL +Y ++ + L +K+ ++ + ++ +++ ++ E +
Sbjct 1907 VPHVTEPNIDLDSENILLEYFNKDKNIGERLKIKSGENFEIIYAKHIQMKKIYGVLPESL 1966
Query 176 ETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYH 214
ETY + + + N I + ++ L Y +Y+H
Sbjct 1967 ETYHKESINEITNNIDLKVTEALKNIWKQKRDYSQNYFH 2005
> axy:AXYL_02733 motA; chemotaxis protein MotA
Length=291
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (53%), Gaps = 2/78 (3%)
Query 121 IANSLLDADTKTILNKYLDQQQQAELNVKAANYEYLVMSGQLKRQEVNNLIAEEIETYAR 180
I + + D ++ I ++Y + A+L +Y +++SG + E+ L+ EEIETY
Sbjct 97 IESHIEDPESSPIFSEYPRIAKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRH 156
Query 181 ANGYNLQNRILRETSDGL 198
+ R L++ +DGL
Sbjct 157 ER--EVPVRALQQMADGL 172
Lambda K H a alpha
0.312 0.125 0.349 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 492458942508