bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-50_CDS_annotation_glimmer3.pl_2_1 Length=242 Score E Sequences producing significant alignments: (Bits) Value fab:101815632 ASB8; ankyrin repeat and SOCS box containing 8 37.4 ppr:PBPRA1662 EntE, peptide arylation enzyme 35.8 7.4 > fab:101815632 ASB8; ankyrin repeat and SOCS box containing 8 Length=284 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/78 (27%), Positives = 35/78 (45%), Gaps = 5/78 (6%) Query 35 KGNGSQIRVQTLVIRGFGNKHSNK-----HKGTGFLSIIINTRMSRKIAIPINTSRKLTQ 89 KG R+ L++RG G + + H+ TG L + N R+ ++A ++L + Sbjct 179 KGQSPVSRLVALLVRGLGTEREDSCLDLLHRATGHLELRQNGRLPWEVARDPQLCQRLWR 238 Query 90 ICILTGSRTVSHSTNVRR 107 +C GS VRR Sbjct 239 LCAAPGSLQALSRCAVRR 256 > ppr:PBPRA1662 EntE, peptide arylation enzyme Length=547 Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 53/118 (45%), Gaps = 13/118 (11%) Query 90 ICILTGSRTVSHSTNVRRIYRSLPNTKKIGLINIRRRRFSTPKSAKN------IANTTTG 143 ICI HS ++ IY ++P+TK L I F+ PK + ++ TTG Sbjct 146 ICI--AEYLEQHSNSITHIYTAVPHTKYRSLTGIENTPFTPPKIDPDTPAIFLVSGGTTG 203 Query 144 NKKTI---HPILKFCLQTKLRNSNVKTSIRFIGLVIFNRNFNRGGRTLLNNITKQIGG 198 K I H F +++ ++ SN+ ++ ++ NF G +L ++ +GG Sbjct 204 LPKLIPRTHNDYLFNIKSCVQASNISAKDTYLAVLPAAHNFTLGCPGILGALS--LGG 259 Lambda K H a alpha 0.322 0.134 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 337638516438