bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-8_CDS_annotation_glimmer3.pl_2_6
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 51.6 4e-04
nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase su... 38.9 2.9
nit:NAL212_1386 methane monooxygenase/ammonia monooxygenase su... 38.9 2.9
nit:NAL212_0797 methane monooxygenase/ammonia monooxygenase su... 38.9 2.9
nii:Nit79A3_1233 methane monooxygenase/ammonia monooxygenase s... 38.5 4.4
nii:Nit79A3_2886 methane monooxygenase/ammonia monooxygenase s... 38.1 4.7
nii:Nit79A3_1595 methane monooxygenase/ammonia monooxygenase s... 38.1 4.7
nii:Nit79A3_1079 methane monooxygenase/ammonia monooxygenase s... 38.1 4.7
nii:Nit79A3_0471 methane monooxygenase/ammonia monooxygenase s... 38.1 4.7
nit:NAL212_2303 methane monooxygenase/ammonia monooxygenase su... 38.1 6.0
nit:NAL212_2818 methane monooxygenase/ammonia monooxygenase su... 37.7 7.0
enl:A3UG_13705 diguanylate phosphodiesterase 38.1 8.3
> fve:101314332 capsid protein VP1-like
Length=421
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/286 (24%), Positives = 115/286 (40%), Gaps = 53/286 (19%)
Query 335 AYRFRAYESVYNAYYRD--IRNNPFVVNGRPVYNKWLPTMKGGAD---STLYQLHQCNWE 389
A RAY +YN ++RD ++N+ V G G D ST Y L +
Sbjct 177 ALPVRAYNLIYNQWFRDENLQNSVVVDKGD------------GPDTTPSTNYTLLRRGKR 224
Query 390 RDFLTTAVPNPQQGMNTPLVGLTIG-------DVVTRSEDGTLSVQKQTVLVDEDGSKYG 442
D+ T+A+P PQ+G V L +G + S+ G +S + ++ + + G
Sbjct 225 HDYFTSALPWPQKGGTA--VSLPLGTSAPIAFSGASGSDVGVISTTQGNLIKNMYSTGSG 282
Query 443 VSYRVSEDGERLVGVDYDPVSEKTPVTAINSYAELAALAAEQSAGFTIETLRYVNAYQKF 502
S ++ + A YA+L+A A TI LR QK
Sbjct 283 TSLKIG-----------------SATVATGLYADLSAATAA-----TINQLRQSFQIQKL 320
Query 503 LELNMRKGFSYKQIMQGRWDIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQGSSSQGQ 562
LE + R G Y +I++ + + L PE++GG S +++ + QT +
Sbjct 321 LERDARGGTRYTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPIAQTGGTGAQGTTTP 380
Query 563 YAEALGSKTGIAGVYGNTSNNIEVFCDEESYIIGLLTVTPVPIYTQ 608
T +A +G + + + E ++IGL++V Y Q
Sbjct 381 QGNLAAFGTYMAKGHGFSQSFV-----EHGHVIGLVSVRADLTYQQ 421
> nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nit:NAL212_1386 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nit:NAL212_0797 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1233 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 0/64 (0%)
Query 567 LGSKTGIAGVYGNTSNNIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+ + G G + + ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTGASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_2886 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1595 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1079 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_0471 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nit:NAL212_2303 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y +G+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSGAASANYDMSLWYDSKYYKLGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 627 FDRI 630
FD++
Sbjct 61 FDKV 64
> nit:NAL212_2818 methane monooxygenase/ammonia monooxygenase
subunit C
Length=295
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 573 IAGVYGNTSN------NIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPE 626
+A YG TS ++ ++ D + Y +G+LT+ V I+ + F Y+ +D +PE
Sbjct 27 MATTYGTTSGAASANYDMSLWYDSKYYKLGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 86
Query 627 FDRI 630
FD++
Sbjct 87 FDKV 90
> enl:A3UG_13705 diguanylate phosphodiesterase
Length=532
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 9/138 (7%)
Query 357 FVVNGRPVYNKWLPTMKGGADSTLYQLHQCNWERDFLTTAVPNPQQGMNTPLVGLTIGDV 416
++ G P+ +W PT + G D + ++ D +T + PQ+ + T V LT+GD
Sbjct 141 LLLKGSPILIQWHPTSQSGEDGVMEIINI-----DLITRMILEPQRPLITD-VALTVGDH 194
Query 417 VTR---SEDGTLSVQKQTVLVDEDGSKYGVSYRVSEDGERLVGVDYDPVSEKTPVTAINS 473
R L + L+ E S+Y S VS G + + P +
Sbjct 195 SLRYGQRVTDALKFNETDALIQEMSSRYPFSITVSGPGPEELALKSLPAQLPLGLMLSLL 254
Query 474 YAELAALAAEQSAGFTIE 491
LA LA FT E
Sbjct 255 LGYLAWLATANRMSFTWE 272
Lambda K H a alpha
0.318 0.134 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1799586915471