bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-19_CDS_annotation_glimmer3.pl_2_5

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1      24.6    0.13
  Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia...  22.7    0.62
  Alpavirinae_Human_feces_A_048_Microviridae_AG087_putative.VP1       21.6    1.7


> Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1
Length=649

 Score = 24.6 bits (52),  Expect = 0.13, Method: Composition-based stats.
 Identities = 10/24 (42%), Positives = 14/24 (58%), Gaps = 0/24 (0%)

Query  4    NSWRGLEALITWSDSVTWKTKAGK  27
            N++   E  +TW D+ T  TK GK
Sbjct  236  NTYEADELTVTWFDAATQTTKTGK  259


> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315

 Score = 22.7 bits (47),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 9/38 (24%), Positives = 21/38 (55%), Gaps = 0/38 (0%)

Query  22   KTKAGKMPVLVIQYDHFDDFARWKDWVSHVSFPYAYTR  59
            K K+ ++  +  + D  DDFA + ++    ++P + T+
Sbjct  259  KLKSKELAEMQSRKDQLDDFANFINYRGGTNYPLSRTQ  296


> Alpavirinae_Human_feces_A_048_Microviridae_AG087_putative.VP1
Length=650

 Score = 21.6 bits (44),  Expect = 1.7, Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 0/24 (0%)

Query  4    NSWRGLEALITWSDSVTWKTKAGK  27
            N++   E  +TW D+ +  ++ GK
Sbjct  237  NTYESSELAVTWFDAASQTSRTGK  260



Lambda      K        H        a         alpha
   0.322    0.131    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4053560