bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-24_CDS_annotation_glimmer3.pl_2_3

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Gokush_gi|77020115|ref|YP_338238.1|_putative_major_coat_protein...  19.2    8.2


> Gokush_gi|77020115|ref|YP_338238.1|_putative_major_coat_protein_[Chlamydia_phage_4]
Length=554

 Score = 19.2 bits (38),  Expect = 8.2, Method: Composition-based stats.
 Identities = 16/68 (24%), Positives = 27/68 (40%), Gaps = 14/68 (21%)

Query  13   QSSNMLEDNQFYLVTEIYLNARSFVEFSHKISKL--------NQILSDSHYAESFYSVVN  64
            Q+ N++ D Q +   E       F E+ +K SK+           L   H A+ F ++  
Sbjct  451  QNGNVVVDEQVFGYQE------RFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPT  504

Query  65   LGDIYYRE  72
            L   +  E
Sbjct  505  LSPEFIEE  512



Lambda      K        H        a         alpha
   0.318    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3681480