bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_3
Length=45
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_D_015_Microviridae_AG020_putative.VP4 61.6 1e-14
Alpavirinae_Human_feces_D_008_Microviridae_AG098_putative.VP1 25.8 0.017
Alpavirinae_Human_feces_D_031_Microviridae_AG0425_putative.VP1 25.8 0.017
Gokush_Human_feces_E_009_Microviridae_AG0285_putative.VP1 18.9 3.0
Gokush_Human_feces_A_029_Microviridae_AG0226_putative.VP1 18.5 4.6
Gokush_Human_feces_B_068_Microviridae_AG0331_putative.VP1 18.5 4.6
Pichovirinae_66_Microbialites_001_Microviridae_AG0132_putative.VP1 18.1 7.3
> Alpavirinae_Human_feces_D_015_Microviridae_AG020_putative.VP4
Length=563
Score = 61.6 bits (148), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 28/37 (76%), Positives = 31/37 (84%), Gaps = 0/37 (0%)
Query 1 LDWSVPVGKISRFFYRFNRFDKMKGSLRSKLKAVALF 37
L+W +P GKISRF YRFN F+KMKGS RSKLKAV LF
Sbjct 451 LNWDIPKGKISRFLYRFNMFEKMKGSFRSKLKAVELF 487
Score = 17.7 bits (34), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 10/18 (56%), Gaps = 1/18 (6%)
Query 5 VPVGK-ISRFFYRFNRFD 21
VP G I R F RF +D
Sbjct 359 VPSGSLIDRLFPRFTYYD 376
> Alpavirinae_Human_feces_D_008_Microviridae_AG098_putative.VP1
Length=618
Score = 25.8 bits (55), Expect = 0.017, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
Query 7 VGKISRFFYRFNRFDKMKGSLRSKLK 32
+G + RFF R+D++ G+ RS LK
Sbjct 514 MGYLPRFFDVKTRYDEVLGAFRSTLK 539
> Alpavirinae_Human_feces_D_031_Microviridae_AG0425_putative.VP1
Length=614
Score = 25.8 bits (55), Expect = 0.017, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
Query 7 VGKISRFFYRFNRFDKMKGSLRSKLK 32
+G + RFF R+D++ G+ RS LK
Sbjct 510 MGYLPRFFDVKTRYDEVLGAFRSTLK 535
> Gokush_Human_feces_E_009_Microviridae_AG0285_putative.VP1
Length=559
Score = 18.9 bits (37), Expect = 3.0, Method: Composition-based stats.
Identities = 7/12 (58%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 10 ISRFFYRFNRFD 21
I RF+ R RFD
Sbjct 422 IERFWSRKTRFD 433
> Gokush_Human_feces_A_029_Microviridae_AG0226_putative.VP1
Length=470
Score = 18.5 bits (36), Expect = 4.6, Method: Composition-based stats.
Identities = 6/12 (50%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 10 ISRFFYRFNRFD 21
+ RF+ R +RFD
Sbjct 333 LERFWSRKDRFD 344
> Gokush_Human_feces_B_068_Microviridae_AG0331_putative.VP1
Length=547
Score = 18.5 bits (36), Expect = 4.6, Method: Composition-based stats.
Identities = 6/12 (50%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 10 ISRFFYRFNRFD 21
+ RF+ R +RFD
Sbjct 410 LERFWSRKDRFD 421
> Pichovirinae_66_Microbialites_001_Microviridae_AG0132_putative.VP1
Length=518
Score = 18.1 bits (35), Expect = 7.3, Method: Composition-based stats.
Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 10 ISRFFYRFNRFD 21
+ R F RF+R D
Sbjct 392 LPREFSRFDRLD 403
Lambda K H a alpha
0.336 0.146 0.441 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3701457