bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-9_CDS_annotation_glimmer3.pl_2_3

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_A_021_Microviridae_AG076_hypothetical.p...  47.4    9e-11
  Alpavirinae_Human_feces_C_016_Microviridae_AG0275_hypothetical....  18.9    5.5  
  Alpavirinae_Human_feces_B_039_Microviridae_AG096_putative.VP1       18.1    9.9


> Alpavirinae_Human_feces_A_021_Microviridae_AG076_hypothetical.protein
Length=52

 Score = 47.4 bits (111),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 20/48 (42%), Positives = 30/48 (63%), Gaps = 0/48 (0%)

Query  5   YLCSIQSKLNPSQCETVLVPVDEVSDFVSSNLRPDCILIFSQCSTFKA  52
           +L +I SK +P     V V   +VSDF+S NL PD +++FS C+ + A
Sbjct  2   FLATISSKFDPKDQRAVFVNSSDVSDFLSDNLTPDVVIVFSYCTGYDA  49


> Alpavirinae_Human_feces_C_016_Microviridae_AG0275_hypothetical.protein.HMPREF9141.0987
Length=335

 Score = 18.9 bits (37),  Expect = 5.5, Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (55%), Gaps = 0/31 (0%)

Query  22   LVPVDEVSDFVSSNLRPDCILIFSQCSTFKA  52
            L+   EVS+ +  NL+    LI +Q  + KA
Sbjct  197  LIADKEVSEEMRRNLQKQRDLIVAQIDSTKA  227


> Alpavirinae_Human_feces_B_039_Microviridae_AG096_putative.VP1
Length=579

 Score = 18.1 bits (35),  Expect = 9.9, Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (6%)

Query  8    SIQS-KLNPSQCETVLVP  24
            S QS K+ P Q  ++ VP
Sbjct  527  SYQSMKIRPQQLNSIFVP  544



Lambda      K        H        a         alpha
   0.320    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3661448