bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-11_CDS_annotation_glimmer3.pl_2_8

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|669354414|gb|KFD84218.1|  AAA domain protein                       36.2    0.94
gi|657882033|ref|WP_029586455.1|  hypothetical protein                32.3    8.9


>gi|669354414|gb|KFD84218.1| AAA domain protein [Vibrio cholerae]
Length=294

 Score = 36.2 bits (82),  Expect = 0.94, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (62%), Gaps = 2/47 (4%)

Query  10   YVNNEKKMIEREIPGMNTYKIAEKFAKILNDPEETKLVCVIESWKLY  56
            ++NN+  +I++ IP  NT  I E++   LN P+ + +  +I SW+ Y
Sbjct  62   FMNNKWHVIDKNIPIFNT--IFEQYVDPLNAPDVSSIKNIISSWRFY  106


>gi|657882033|ref|WP_029586455.1| hypothetical protein [Bradyrhizobium sp. URHD0069]
Length=135

 Score = 32.3 bits (72),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 29/65 (45%), Gaps = 4/65 (6%)

Query  3   ATKFTAIYVNNEKKMIEREIPGMNTYK----IAEKFAKILNDPEETKLVCVIESWKLYPK  58
           AT F  + V          IPG  T      I +  +KI++ P E  +VC I   +L   
Sbjct  35  ATPFPGVVVRAYSGETPSLIPGFKTVSMRDIIMQPGSKIMSHPMENAMVCHITEGELQID  94

Query  59  EDEKT  63
           +DEKT
Sbjct  95  QDEKT  99



Lambda      K        H        a         alpha
   0.311    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 439624502940