bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-12_CDS_annotation_glimmer3.pl_2_6

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|533187576|ref|XP_005406764.1|  PREDICTED: twinfilin-1              38.5    6.7


>gi|533187576|ref|XP_005406764.1| PREDICTED: twinfilin-1 [Chinchilla lanigera]
Length=386

 Score = 38.5 bits (88),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 43/162 (27%), Positives = 76/162 (47%), Gaps = 22/162 (14%)

Query  167  QDSIEKLTNAQEQKTAAEYFYIQAQEKKVWEEVREQI-VKSDIAEETKEAMIKKTGLENF  225
            Q S   LT A+E+           ++ K+ E   ++I V++D+  +TK   ++      F
Sbjct  161  QSSPAPLTAAEEE----------LRQIKINESPEDRIGVQADVGVDTKHQTLQGVA---F  207

Query  226  NLMQAGIESITRQKLNSEQINYLKGQLAIGWANVAIGEKSVSNEADRIANDLMMGMKDLD  285
             + +   +++  +KLNS Q+NY+  QL I + N  I E  + NE   +AN     +KDL 
Sbjct  208  PISREAFQAL--EKLNSRQLNYV--QLEIDFKNEII-EIDLKNEIIVLANTTNTELKDLP  262

Query  286  R---KDRELIKDWIYEGIHAGKEISGEILNWLMRGTPKTITE  324
            +   KD      ++Y+  H G  +   +  + M G   +I E
Sbjct  263  KRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRE  304



Lambda      K        H        a         alpha
   0.312    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2103429244710