bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-15_CDS_annotation_glimmer3.pl_2_3
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
gi|516537416|ref|WP_017925145.1| anthranilate phosphoribosyltran... 37.4 0.92
gi|575457438|gb|AHG88555.1| Aldose 1-epimerase 35.8 2.8
gi|502741073|ref|WP_012976057.1| aldo/keto reductase 35.8 2.9
gi|544686234|ref|WP_021117992.1| type IV conjugative transfer sy... 35.0 6.2
gi|672128141|ref|XP_008787550.1| PREDICTED: cytochrome P450 78A5... 34.7 6.6
gi|488356048|ref|WP_002425433.1| tetrahydrofolate synthase 34.7 7.3
gi|498454548|ref|WP_010760021.1| FolC protein 34.3 8.1
gi|500697004|ref|WP_011977535.1| hypothetical protein 33.9 9.8
>gi|516537416|ref|WP_017925145.1| anthranilate phosphoribosyltransferase [Thioalkalivibrio sp.
HL-Eb18]
Length=344
Score = 37.4 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 36 EPIKDGAPIIYTEKKDGVLPEYDIRTDRWDIAIEAMDKVNMD 77
+ I GAP E KDGV+ EY +R + + +A+ A+D V +D
Sbjct 226 DEISIGAPTWVAELKDGVIREYTVRPEDFGLAVTALDAVRVD 267
>gi|575457438|gb|AHG88555.1| Aldose 1-epimerase [Gemmatimonadetes bacterium KBS708]
Length=271
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (3%)
Query 4 AKLIKCTGRMHSVETFEGETIEEKVNRIVNNGEPIKDGAPIIYTEKKD-GVLPEYDI-RT 61
A ++ + + T +GE + G I+ G P+++ + D G LP++ RT
Sbjct 17 AAVLPYGAHVTAWSTADGEQLYLSPRTAYEEGSAIRGGVPVVFPQFSDRGPLPKHGFART 76
Query 62 DRWDIAIEAMDKVNM 76
WD+ A D V +
Sbjct 77 RAWDVLAHAADAVTL 91
>gi|502741073|ref|WP_012976057.1| aldo/keto reductase [Azospirillum lipoferum]
gi|288960371|ref|YP_003450711.1| D-threo-aldose 1-dehydrogenase [Azospirillum sp. B510]
gi|288912679|dbj|BAI74167.1| D-threo-aldose 1-dehydrogenase [Azospirillum sp. B510]
Length=353
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 11/29 (38%), Positives = 22/29 (76%), Gaps = 0/29 (0%)
Query 49 KKDGVLPEYDIRTDRWDIAIEAMDKVNMD 77
++DG +P + + W++A+EAMD+V++D
Sbjct 189 RRDGAVPAIGLGVNEWEVALEAMDEVDLD 217
>gi|544686234|ref|WP_021117992.1| type IV conjugative transfer system coupling protein TraD [Haemophilus
parasuis]
gi|529272966|gb|EQA15459.1| type IV conjugative transfer system coupling protein TraD [Haemophilus
parasuis 174]
Length=684
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (46%), Gaps = 7/57 (12%)
Query 43 PIIYTEKKDGVLPEYDIRTDRWDIAIEAMDKVNMDRMAKRENKPDVTEVPDKKDGSP 99
PI Y E KD +L D R WD+ E DK + + A+ +P+ K G P
Sbjct 232 PIFYREGKDVILNPMDERCPNWDLWAECQDKADFENFAQ-------PLLPESKGGDP 281
>gi|672128141|ref|XP_008787550.1| PREDICTED: cytochrome P450 78A5-like [Phoenix dactylifera]
Length=506
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 22/86 (26%), Positives = 40/86 (47%), Gaps = 5/86 (6%)
Query 8 KCTGRMHSVETFEGETIEEKVNRIVNNGEPIKDG--APIIYTEKKDGVLPEYDIRTDRWD 65
+C G + V F G+ +EE R ++ G P +DG ++ +K+ L + D+ W+
Sbjct 250 RCRGLVERVNVFVGKIVEEHRRRRIDRGVPNEDGDFVDVLLDLEKEETLSDSDMVAVLWE 309
Query 66 IAIEAMDKVNMDR---MAKRENKPDV 88
+ D V + MA+ PD+
Sbjct 310 MIFRGTDTVAILLEWIMARMVLHPDI 335
>gi|488356048|ref|WP_002425433.1| tetrahydrofolate synthase [Enterococcus faecalis]
gi|315174739|gb|EFU18756.1| bifunctional protein FolC [Enterococcus faecalis TX1346]
Length=440
Score = 34.7 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 26/77 (34%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query 16 VETFEGETIEEKVNRIVNNGEPIKDGAPIIYTEKKDGVLPEYDIRTDRWDIA-IEAMDKV 74
V TF IE RI NG+PI D IIY EK ++ E D T+ I E + +
Sbjct 70 VGTFTSPYIESFNERIAINGQPISDEQLIIYVEKYQPIIKELDQITEVAGITEFETLTGM 129
Query 75 NMDRMAKRENKPDVTEV 91
+D + V EV
Sbjct 130 ALDYFVNEQVDIAVVEV 146
>gi|498454548|ref|WP_010760021.1| FolC protein [Enterococcus pallens]
gi|486853571|gb|EOH86653.1| FolC protein [Enterococcus pallens ATCC BAA-351]
gi|508245026|gb|EOU18449.1| folylpolyglutamate synthase [Enterococcus pallens ATCC BAA-351]
Length=438
Score = 34.3 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 24/78 (31%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query 15 SVETFEGETIEEKVNRIVNNGEPIKDGAPIIYTEKKDGVLPEYDIRTDRWDIA-IEAMDK 73
+V +F IEE RI NGEPI D I + E+ ++ E D + D I E +
Sbjct 67 TVGSFTSPYIEEFNERIAINGEPIADAELIAWVERYQPLVDELDEQPDISGITEFEVLTA 126
Query 74 VNMDRMAKRENKPDVTEV 91
+ +D +R+ + EV
Sbjct 127 LALDYFLERQVDVAIVEV 144
>gi|500697004|ref|WP_011977535.1| hypothetical protein [Methanococcus maripaludis]
gi|150403081|ref|YP_001330375.1| hypothetical protein MmarC7_1158 [Methanococcus maripaludis C7]
gi|150034111|gb|ABR66224.1| conserved hypothetical protein [Methanococcus maripaludis C7]
Length=195
Score = 33.9 bits (76), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (52%), Gaps = 6/89 (7%)
Query 3 TAKLIKCTGRMHSVETFEGETIEEKVNRIVNNGEPIKDGAPIIYTEKKDGVLPEYDIRTD 62
TAK+I G H VE+ + E IE+ V+ I+ +G P +G ++ + + + +YD+ D
Sbjct 46 TAKII---GYSHKVESLDKELIEKSVDMILKDGYP-GNGIQFVHKQVLEIISEKYDVIAD 101
Query 63 --RWDIAIEAMDKVNMDRMAKRENKPDVT 89
R D + +D + + R+N VT
Sbjct 102 GTRRDDRVPRLDHSEIQSLEMRKNIQYVT 130
Lambda K H a alpha
0.310 0.132 0.375 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 436588657356