bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-18_CDS_annotation_glimmer3.pl_2_6

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|501784240|ref|WP_012639450.1|  dihydroorotase                      35.0    5.8
gi|502275071|ref|WP_012749042.1|  glycine betain transporter subs...  35.0    6.4


>gi|501784240|ref|WP_012639450.1| dihydroorotase [Thioalkalivibrio sulfidiphilus]
 gi|220936075|ref|YP_002514974.1| dihydroorotase [Thioalkalivibrio sulfidiphilus HL-EbGr7]
 gi|219997385|gb|ACL73987.1| dihydroorotase, multifunctional complex type [Thioalkalivibrio 
sulfidiphilus HL-EbGr7]
Length=426

 Score = 35.0 bits (79),  Expect = 5.8, Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (3%)

Query  31   VVAHPMSYYLN--GGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMAS  88
            V  HP+ + LN  G V    + TR  LP     AE+ A G +   T+ T  ++ L  +++
Sbjct  177  VYLHPIDWSLNAKGCVHEGPVGTRLGLPGIPAAAETAALGTILALTEQTGARVHLCRLST  236

Query  89   TMASESEARALKDG  102
              A++  ARA  DG
Sbjct  237  ARAAQMLARARHDG  250


>gi|502275071|ref|WP_012749042.1| glycine betain transporter substrate-binding protein [Geobacillus 
sp. WCH70]
 gi|239825867|ref|YP_002948491.1| glycine betain transporter substrate-binding protein [Geobacillus 
sp. WCH70]
 gi|239806160|gb|ACS23225.1| Substrate-binding region of ABC-type glycine betaine transport 
system [Geobacillus sp. WCH70]
Length=300

 Score = 35.0 bits (79),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query  26  FVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPT-VGKLDLM  84
           F ++V++AH ++ YL    DL  +  +  L  AF   +++  GDV+++ + T  G L+++
Sbjct  38  FTEQVILAHLLAEYLKANTDLD-VEMKDSLGGAFVLQQAMEKGDVDLYVEYTGTGHLNIL  96



Lambda      K        H        a         alpha
   0.312    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 441262009536