bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-19_CDS_annotation_glimmer3.pl_2_5

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|657748481|ref|XP_008309571.1|  PREDICTED: COMM domain-containi...  35.4    2.4
gi|492907865|ref|WP_006038271.1|  tRNA-dihydrouridine synthase        34.3    7.0
gi|494219311|ref|WP_007133287.1|  dihydrouridine synthase DuS         33.5    9.8


>gi|657748481|ref|XP_008309571.1| PREDICTED: COMM domain-containing protein 9 [Cynoglossus semilaevis]
Length=195

 Score = 35.4 bits (80),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (46%), Gaps = 3/59 (5%)

Query  4    NSWRGLEALITWSDSVTWKTKAGKMPVLVIQYDHFD---DFARWKDWVSHVSFPYAYTR  59
             S + L   I   +S TW+T+A  + V + Q  H D   D  R  D V H+S P    +
Sbjct  90   QSLKNLITKILLENSPTWRTEAAGVNVSLPQLTHLDWRVDMVRGSDSVGHMSVPTCLVQ  148


>gi|492907865|ref|WP_006038271.1| tRNA-dihydrouridine synthase [Paenibacillus curdlanolyticus]
 gi|304345186|gb|EFM11022.1| dihydrouridine synthase DuS [Paenibacillus curdlanolyticus YK9]
Length=312

 Score = 34.3 bits (77),  Expect = 7.0, Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (59%), Gaps = 0/34 (0%)

Query  18   SVTWKTKAGKMPVLVIQYDHFDDFARWKDWVSHV  51
            ++   TKAG +PV V     FD    W+DW++H+
Sbjct  114  AIIQATKAGGLPVSVKTRLGFDAIEEWRDWLTHI  147


>gi|494219311|ref|WP_007133287.1| dihydrouridine synthase DuS, partial [Paenibacillus lactis]
 gi|353179372|gb|EHB44933.1| dihydrouridine synthase DuS, partial [Paenibacillus lactis 154]
Length=156

 Score = 33.5 bits (75),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (59%), Gaps = 0/34 (0%)

Query  18   SVTWKTKAGKMPVLVIQYDHFDDFARWKDWVSHV  51
            ++   TKAG +PV V     FD    W+DW++H+
Sbjct  70   AIIQATKAGGLPVSVKTRLGFDAIEEWRDWLTHI  103



Lambda      K        H        a         alpha
   0.322    0.131    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438678852570