bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_4
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094354|emb|CDL65742.1| unnamed protein product 367 2e-114
gi|490418709|ref|WP_004291032.1| hypothetical protein 354 7e-110
gi|494822885|ref|WP_007558293.1| hypothetical protein 333 2e-101
gi|496050829|ref|WP_008775336.1| hypothetical protein 275 5e-80
gi|575094321|emb|CDL65708.1| unnamed protein product 225 5e-61
gi|547226430|ref|WP_021963493.1| putative uncharacterized protein 206 1e-54
gi|575094339|emb|CDL65730.1| unnamed protein product 184 7e-47
gi|575094297|emb|CDL65693.1| unnamed protein product 128 9e-28
gi|649555287|gb|KDS61824.1| capsid family protein 124 1e-26
gi|565841287|ref|WP_023924568.1| hypothetical protein 121 1e-25
>gi|575094354|emb|CDL65742.1| unnamed protein product [uncultured bacterium]
Length=615
Score = 367 bits (941), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 238/652 (37%), Positives = 344/652 (53%), Gaps = 69/652 (11%)
Query 6 SYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQPVDTSA 65
S DIKN P R+GFDLS K FTAK GELLPV K LP D FNI+ F RTQP++TSA
Sbjct 2 SMADIKNRPSRNGFDLSFKKNFTAKAGELLPVMTKVVLPGDSFNINLRSFTRTQPLNTSA 61
Query 66 FTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPNYAASSSA--SISFNRNLPWIDLATIN 123
F R+REYY+++FVP ++ + I M +A+ + + + +P+ I
Sbjct 62 FARMREYYDFYFVPFEQMWNKFDSCITQMNANVQHASGPTLDDNTPLSGRMPYFTSEQIA 121
Query 124 TAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGET----------SPEKYVDNLRCSAL 173
+ N Q++A+ N FG RS KL+ YLGYG+ S + + NL S
Sbjct 122 DYL-NDQATAARKNPFGFNRSTLTCKLLQYLGYGDYNSFDSETNTWSAKPLLYNLELSPF 180
Query 174 PLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNPND-SVFELRY 232
PL AYQKIY D+YR++QWEK+ P T+N D+ G +DL +D + F++RY
Sbjct 181 PLLAYQKIYSDFYRYTQWEKTNPSTFNLDYIKGTSDL----QMDLTGLPSDDNNFFDIRY 236
Query 233 ANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDVNGYASDY 292
N+ KD++ G LP +Q+G + V ++G + V+ +G
Sbjct 237 CNYQKDMFHGVLPVAQYGSASVVP-----------------INGQLNVISNGDSGPIFKT 279
Query 293 AAGIRDGGINGAPDNGQTATAYPS--GNLPSDYPYFYAKGSSKTPVGSIANPAHISGSDL 350
+ PD G T+Y + GN+ D F GS+ VG A+P+ G
Sbjct 280 S----------TPDPGTPGTSYVTVGGNIGVDNRSFGVSGSTLN-VGKSADPSGY-GFPS 327
Query 351 NAQVSGQL----------NAQF--SVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVS 398
NA L N F +L LR AE LQKWKE++ + ++Y +Q++ H+G+
Sbjct 328 NASTRSLLWENPNLIIENNQGFYVPILALRQAEFLQKWKEVSVSGEEDYKSQIEKHWGIK 387
Query 399 TNPMQAHRSTRICGFDGSIDISAVENTNLTSDEAI-IRGKG--LGGQRINDPSNFTCTEH 455
+ +H++ + G S+DI+ V N N+T D A I GKG G I S E+
Sbjct 388 VSDFLSHQARYLGGCATSLDINEVINNNITGDNAADIAGKGTFTGNGSIRFESK---GEY 444
Query 456 GIIMCIYHATPLLDYVPTGPDLQLMTTVKGESFPVPEFDSLGMESLPMLSLVNSKAIGDV 515
GIIMCIYH P++DYV +G D T V SFP+PE D +GMES+P++ +N D
Sbjct 445 GIIMCIYHVLPIVDYVGSGVD-HSCTLVDATSFPIPELDQIGMESVPLVRAMNPVKESDT 503
Query 516 -VARSYAGYVPRYISWKTSTDVVRGAFTDTLKSWVAPVDLDYMKAFFARNTDDSTIAENV 574
A ++ GY PRYI WKTS D G F D+L++W PV + + + N + E
Sbjct 504 PSADTFLGYAPRYIDWKTSVDRSVGDFADSLRTWCLPVGDKELTSANSLNFPSNPNVEPD 563
Query 575 LLTYSWFKINPSVLNPIFGVAVDSSWNTDQLLCNCQFNVKVARNLSYDGMPY 626
+ +FK+NPS+++P+F V DS+ TD+ LC+ F+VKV RNL +G+PY
Sbjct 564 SIAAGFFKVNPSIVDPLFAVVADSTVKTDEFLCSSFFDVKVVRNLDVNGLPY 615
>gi|490418709|ref|WP_004291032.1| hypothetical protein [Bacteroides eggerthii]
gi|217986636|gb|EEC52970.1| putative capsid protein (F protein) [Bacteroides eggerthii DSM
20697]
Length=578
Score = 354 bits (908), Expect = 7e-110, Method: Compositional matrix adjust.
Identities = 244/659 (37%), Positives = 337/659 (51%), Gaps = 114/659 (17%)
Query 1 MSSLFSYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQP 60
M+++ S I+N P R+GFDLS K FTAK GELLPV K LP D F I+ + F RTQP
Sbjct 1 MANIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLKAFTRTQP 60
Query 61 VDTSAFTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPNYAASSSASISF--NRNLPWID 118
V+T+AF RIREYY++FFVP LL+ +N + M + P +A S + +F + +P++
Sbjct 61 VNTAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYMT 120
Query 119 LATINTAIGNVQSSAS-----PNNFFGVLRSEGFKKLVSYLGYG----------ETSPEK 163
I + I N S+AS +N+FG RS+ KL+ YLGYG T+P
Sbjct 121 SEAIASYI-NALSTASALADYKSNYFGYNRSKSSVKLLEYLGYGNYESFLTDDWNTAP-- 177
Query 164 YVDNLRCSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNP 223
+ NL + L AYQKIY D+YR SQWE+ P T+N D+ +G + F QN
Sbjct 178 LMANLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYLDGSSMNLDNAYSTEFYQNY 237
Query 224 NDSVFELRYANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYG 283
N F+LRY NW KDL+ G LP+ Q+G+ A S+ T DV+G + +
Sbjct 238 N--FFDLRYCNWQKDLFHGVLPHQQYGETAVASI-------------TPDVTGKLTL--- 279
Query 284 DVNGYASDYAAGIRDGGINGAPDNGQTATAYPSGNLPSDYPYFYAKGSSKTPVGSIANPA 343
S+++ + +P TA+ + NL PA
Sbjct 280 ------SNFST------VGTSP---TTASGTATKNL----------------------PA 302
Query 344 HISGSDLNAQVSGQLNAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPMQ 403
+ DL S+L LR AE LQKWKEI Q+ ++Y Q++ H+GVS
Sbjct 303 FDTVGDL------------SILVLRQAEFLQKWKEITQSGNKDYKDQLEKHWGVSVGDGF 350
Query 404 AHRSTRICGFDGSIDISAVENTNLT-SDEAIIRGKGLG--GQRINDPSNFTCTEHGIIMC 460
+ T + G SIDI+ V NTN+T S A I GKG+G IN SN +G+IMC
Sbjct 351 SELCTYLGGVSSSIDINEVINTNITGSAAADIAGKGVGVANGEINFNSN---GRYGLIMC 407
Query 461 IYHATPLLDYVPTGPDLQLMTTVKGESFPVPEFDSLGMESLPMLSLVNSKAIGDVVARSY 520
IYH PLLDY D + V + +PEFD +GM+S+P++ L+N RS+
Sbjct 408 IYHCLPLLDYTTDMLDPAFL-KVNSTDYAIPEFDRVGMQSMPLVQLMNP-------LRSF 459
Query 521 A-------GYVPRYISWKTSTDVVRGAFTDTLKSWVAPV-DLDYMKAFFARN-----TDD 567
A GYVPRYI +KTS D G F TL SWV ++ +K N
Sbjct 460 ANASGLVLGYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGNISVLKQVTLPNDAPPIEPS 519
Query 568 STIAENVLLTYSWFKINPSVLNPIFGVAVDSSWNTDQLLCNCQFNVKVARNLSYDGMPY 626
+ + +++FK+NP L+PIF V NTDQ LC+ F++K RNL DG+PY
Sbjct 520 EPVPSVAPMNFTFFKVNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY 578
>gi|494822885|ref|WP_007558293.1| hypothetical protein [Bacteroides plebeius]
gi|198272099|gb|EDY96368.1| putative capsid protein (F protein) [Bacteroides plebeius DSM
17135]
Length=613
Score = 333 bits (854), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 214/651 (33%), Positives = 340/651 (52%), Gaps = 70/651 (11%)
Query 1 MSSLFSYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQP 60
M+++ S ++N P R+G+DL+ K FTAK G L+PV+W LP D N + + F RTQP
Sbjct 8 MANIMSMKSVRNKPTRAGYDLTQKINFTAKAGSLIPVWWTPVLPFDDLNATVKSFVRTQP 67
Query 61 VDTSAFTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPNYAASS--SASISFNRNLPWID 118
++T+AF R+R Y++++FVP ++ AI M +A+ + ++ + LP+
Sbjct 68 LNTAAFARMRGYFDFYFVPFRQMWNKFPTAITQMRTNLLHASGPVLADNVPLSDELPYF- 126
Query 119 LATINTAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGETSP---------------EK 163
T + S A N FG R+ ++ YLGYG+ P
Sbjct 127 --TAEQVADYIVSLADSKNQFGYYRAWLVCIILEYLGYGDFYPYIVEAAGGEGATWATRP 184
Query 164 YVDNLRCSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGE-DSTPVASSLDLFSQN 222
++NL+ S PL+AYQKIY D+ R++QWE+S P T+N D+ +G DS + +++ F +
Sbjct 185 MLNNLKFSPFPLFAYQKIYADFNRYTQWERSNPSTFNIDYISGSADSLQLDFTVEGFKDS 244
Query 223 PNDSVFELRYANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVY 282
N +F++RY+NW +DL G++P +Q+G+ +AV VSG M VV
Sbjct 245 FN--LFDMRYSNWQRDLLHGTIPQAQYGEASAVP-----------------VSGSMQVV- 284
Query 283 GDVNGYASDYAAGIRDGGINGAPDNGQTATAYPSGNLPSDYPYFYAKGSSKTPVGSIANP 342
+G A GQ A+ +GN+ Y + ++T VG +
Sbjct 285 ---------------EGPTPPAFTTGQDGVAFLNGNVTIQGSSGYLQ--AQTSVGE-SRI 326
Query 343 AHISGSDLNAQVSGQLNAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPM 402
+ ++ V G + S+L LR AEA QKWKE+A A+ ++Y +Q++AH+G S N
Sbjct 327 LRFNNTNSGLIVEGDSSFGVSILALRRAEAAQKWKEVALASEEDYPSQIEAHWGQSVNKA 386
Query 403 QAHRSTRICGFDGSIDISAVENTNLTSDEAI-IRGKG-LGGQRINDPSNFTCT-EHGIIM 459
+ + + + I+ V N N+T + A I GKG + G N NF ++GI+M
Sbjct 387 YSDMCQWLGSINIDLSINEVVNNNITGENAADIAGKGTMSG---NGSINFNVGGQYGIVM 443
Query 460 CIYHATPLLDYVPTGPDLQLMTTVKGESFPVPEFDSLGMESLPMLSLVNSKAIGD----V 515
C++H P LDY+ + P T FP+PEFD +GME +P++ +N D V
Sbjct 444 CVFHVLPQLDYITSAPHFG-TTLTNVLDFPIPEFDKIGMEQVPVIRGLNPVKPKDGDFKV 502
Query 516 VARSYAGYVPRYISWKTSTDVVRGAFTDTLKSWVAPVDLDYMKAFFARNTDDSTIAENVL 575
Y GY P+Y +WKT+ D G F +LK+W+ P D + + A + + D+ E
Sbjct 503 SPNLYFGYAPQYYNWKTTLDKSMGEFRRSLKTWIIPFDDEALLAADSVDFPDNPNVEADS 562
Query 576 LTYSWFKINPSVLNPIFGVAVDSSWNTDQLLCNCQFNVKVARNLSYDGMPY 626
+ +FK++PSVL+ +F V +S NTDQ LC+ F+V V R+L +G+PY
Sbjct 563 VKAGFFKVSPSVLDNLFAVKANSDLNTDQFLCSTLFDVNVVRSLDPNGLPY 613
>gi|496050829|ref|WP_008775336.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448893|gb|EEO54684.1| putative capsid protein (F protein) [Bacteroides sp. 2_2_4]
Length=580
Score = 275 bits (703), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 218/641 (34%), Positives = 327/641 (51%), Gaps = 76/641 (12%)
Query 1 MSSLFSYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQP 60
M+++ S ++N R+GFDLS+K FTAK GELLPV LP DK++I + F RTQP
Sbjct 1 MANIMSLKSLRNKTSRNGFDLSSKRNFTAKPGELLPVKCWEVLPGDKWSIDLKSFTRTQP 60
Query 61 VDTSAFTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPNYAASSSASISFNRNLPWIDLA 120
++T+AF R+REYY+++FVP +LL+ +N + M + P +A +S S N+ L +
Sbjct 61 LNTAAFARMREYYDFYFVPYNLLWNKANTVLTQMYDNPQHA--TSYIPSANQALAGVMPN 118
Query 121 TINTAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGETSPEKYVDNLRCSALPLYAYQK 180
I + + +P+ V + ++K +Y GY + L + L Y
Sbjct 119 VTCKGIADYLNLVAPD----VTTTNSYEK--NYFGYSRS--------LGTAKLLEYLG-- 162
Query 181 IYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNPNDSVFELRYANWNKDLW 240
Y ++Y ++ K+ WT +P++S+L L + L Y + ++
Sbjct 163 -YGNFYTYAT-SKNNTWT----------KSPLSSNLQL------NIYGVLAY----QKIY 200
Query 241 MGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDV-NGYASDYAAGIRDG 299
+ +SQ+ V+ +D + + T D S + G + N + Y +D
Sbjct 201 ADHIRDSQWEKVSPSCFNVDYLSGTVDSAMTID-SMITGQGFAPFYNMFDLRYCNWQKDL 259
Query 300 GINGAPDNGQTATAYPSGNLPSDYPYFYAKGSSKTPVGSIANPAHISGSDLNAQ-VSGQL 358
P TA + NL + A+ +TP G + S + +N Q V+G
Sbjct 260 FHGVLPRQQYGDTAAVNVNLSN---VLSAQYMVQTPDGDPVGGSPFSSTGVNLQTVNG-- 314
Query 359 NAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPMQAHRSTRICGFDGSID 418
+ F+VL LR AE LQKWKEI Q+ ++Y Q++ H+ VS + S + G S+D
Sbjct 315 SGTFTVLALRQAEFLQKWKEITQSGNKDYKDQIEKHWNVSVGEAYSEMSLYLGGTTASLD 374
Query 419 ISAVENTNLT-SDEAIIRGKGL--GGQRINDPSNFTCTE-HGIIMCIYHATPLLDYVPTG 474
I+ V N N+T S+ A I GKG+ G RI+ F E +G+IMCIYH+ PLLDY
Sbjct 375 INEVVNNNITGSNAADIAGKGVVVGNGRIS----FDAGERYGLIMCIYHSLPLLDYTT-- 428
Query 475 PDL--QLMTTVKGESFPVPEFDSLGMESLPMLSLVNSKAIGDVVARSYAGYVPRYISWKT 532
DL T + F +PEFD +GMES+P++SL+N V S GY PRYIS+KT
Sbjct 429 -DLVNPAFTKINSTDFAIPEFDRVGMESVPLVSLMNPLQSSYNVGSSILGYAPRYISYKT 487
Query 533 STDVVRGAFTDTLKSWVAPVD-------LDYMKAFFARNTDDSTIAENVLLTYSWFKINP 585
D GAF TLKSWV D L+Y DD + L+ Y+ FK+NP
Sbjct 488 DVDSSVGAFKTTLKSWVMSYDNQSVINQLNYQ--------DDPNNSPGTLVNYTNFKVNP 539
Query 586 SVLNPIFGVAVDSSWNTDQLLCNCQFNVKVARNLSYDGMPY 626
+ ++P+F VA +S +TDQ LC+ F+VKV RNL DG+PY
Sbjct 540 NCVDPLFAVAASNSIDTDQFLCSSFFDVKVVRNLDTDGLPY 580
>gi|575094321|emb|CDL65708.1| unnamed protein product [uncultured bacterium]
Length=642
Score = 225 bits (574), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 205/694 (30%), Positives = 304/694 (44%), Gaps = 127/694 (18%)
Query 2 SSLFSYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQPV 61
S++ +KN P R+ FDLS++ FTAKVGELLP + + P D +S +F RT P+
Sbjct 5 SNIMGLHGLKNKPSRNSFDLSHRNMFTAKVGELLPCFVQELNPGDSVKVSSSYFTRTAPL 64
Query 62 DTSAFTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPN------YAASSSASISFNRNLP 115
++AFTR+RE ++FFVP L++ + +++M N A+S + +P
Sbjct 65 QSNAFTRLRENVQYFFVPYSALWKYFDSQVLNMTKNANGGDISRIASSLVGNQKVTTQMP 124
Query 116 WIDLAT--------INTAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGETSPEKY--- 164
++ T IN + S P G R KL+ LGYG PE++
Sbjct 125 CVNYKTLHAYLLKFINRSTVGSDGSVGPEFNRGCYRHAESAKLLQLLGYGNF-PEQFANF 183
Query 165 -VDNLR------------------CSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWN 205
V+N + S L AY KI D+Y + QW+ YN N
Sbjct 184 KVNNDKHNQSGQNFKDVTYNNSPYLSIFRLLAYHKICNDHYLYRQWQP-----YNASLCN 238
Query 206 GEDSTPVASSL----DLFSQNPNDSV-------FELRYANWNKDLWMGSLPNSQFGDVAA 254
+ TP +SSL D P+DS+ ++R++N D + G LP SQFG +
Sbjct 239 VDYLTPNSSSLLSIDDALLSIPDDSIKAEKLNLLDMRFSNLPLDYFTGVLPTSQFGSESV 298
Query 255 VSLGLDASTMKIGVTGTADVSGMMGVVYGDVNGYASDYAAGIRDGGINGAPDNGQTATAY 314
V+L L G A S ++ NG S + R G + Q +
Sbjct 299 VNLNL----------GNASGSAVL-------NGTTSKDSGRWRT--TTGEWEMEQRVASS 339
Query 315 PSGNLPSDYPYFYAKGSSKTPVGSIANPAHISGSDLNAQVSGQLNAQFSVLQLRAAEALQ 374
+GNL D T G++A +N +SG L S++ LR A A Q
Sbjct 340 ANGNLKLDNSNGTFISHDHTFSGNVA---------INTSLSGNL----SIIALRNALAAQ 386
Query 375 KWKEIAQANGQNYAAQVKAHFGVSTNPMQAHRSTRICGFDGSIDISAVENTNLTSDEAII 434
K+KEI AN ++ +QV+AHFG+ + + S I G I+I+ N NL+ D
Sbjct 387 KYKEIQLANDVDFQSQVEAHFGIKPDE-KNENSLFIGGSSSMININEQINQNLSGDNKAT 445
Query 435 RG---KGLGGQRINDPSNFTCTEHGIIMCIYHATPLLDYVPTGPDLQLMTTVKGESFPVP 491
G +G G I FT +G+++ IY TP+LD+ G D L T F +P
Sbjct 446 YGAAPQGNGSASI----KFTAKTYGVVIGIYRCTPVLDFAHLGIDRTLFKT-DASDFVIP 500
Query 492 EFDSLGMESL---------PMLSLVNSKAIGDV----VARSYAGYVPRYISWKTSTDVVR 538
E DS+GM+ P + +GD ++ +Y GY PRY +KTS D
Sbjct 501 EMDSIGMQQTFRCEVAAPAPYNDEFKAFRVGDGSSPDMSETY-GYAPRYSEFKTSYDRYN 559
Query 539 GAFTDTLKSWVAPVDLDYMKAFFARNTDDSTIAENVLLTYS------WFKINPSVLNPIF 592
GAF +LKSWV ++ D I NV T++ F P ++ +F
Sbjct 560 GAFCHSLKSWVTGINFD-------------AIQNNVWNTWAGINAPNMFACRPDIVKNLF 606
Query 593 GVAVDSSWNTDQLLCNCQFNVKVARNLSYDGMPY 626
V+ ++ + DQL RNLS G+PY
Sbjct 607 LVSSTNNSDDDQLYVGMVNMCYATRNLSRYGLPY 640
>gi|547226430|ref|WP_021963493.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103382|emb|CCY83994.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=573
Score = 206 bits (524), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/269 (43%), Positives = 160/269 (59%), Gaps = 6/269 (2%)
Query 360 AQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPMQAHRSTRICGFDGSIDI 419
A SVL LR AE LQKW+EIAQ+ +Y Q++ HF VS + + + G+ ++DI
Sbjct 309 AGLSVLALRQAECLQKWREIAQSGKMDYQTQMQKHFNVSPSATLSGHCKYLGGWTSNLDI 368
Query 420 SAVENTNLTSD-EAIIRGKGLGGQRINDPSNFTCTEHGIIMCIYHATPLLDYVPTGPDLQ 478
S V NTNLT D +A I+GKG G N +F +EHGIIMCIYH PLLD+ Q
Sbjct 369 SEVVNTNLTGDNQADIQGKGTGTLNGNK-VDFESSEHGIIMCIYHCLPLLDWSINRIARQ 427
Query 479 LMTTVKGESFPVPEFDSLGMESL-PMLSLVNSKAIGDVVARSYAGYVPRYISWKTSTDVV 537
T + + +PEFDS+GM+ L P + + + + GYVPRY KTS D +
Sbjct 428 NFKTTFTD-YAIPEFDSVGMQQLYPSEMIFGLEDLPSDPSSINMGYVPRYADLKTSIDEI 486
Query 538 RGAFTDTLKSWVAPVDLDYMKAFFARNTDDSTIAENVLLTYSWFKINPSVLNPIFGVAVD 597
G+F DTL SWV+P+ Y+ A+ R ++ +TY++FK+NP +++ IFGV D
Sbjct 487 HGSFIDTLVSWVSPLTDSYISAY--RQACKDAGFSDITMTYNFFKVNPHIVDNIFGVKAD 544
Query 598 SSWNTDQLLCNCQFNVKVARNLSYDGMPY 626
S+ NTDQLL N F++K RN Y+G+PY
Sbjct 545 STINTDQLLINSYFDIKAVRNFDYNGLPY 573
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/270 (41%), Positives = 164/270 (61%), Gaps = 17/270 (6%)
Query 1 MSSLFSYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQP 60
MSS+ S +KN+ +R+GFDLS K AFTAKVGELLP+ K P DKFNI + F RTQP
Sbjct 1 MSSVMSLTALKNSVKRNGFDLSFKNAFTAKVGELLPIMCKEVYPGDKFNIRGQAFTRTQP 60
Query 61 VDTSAFTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPNYAASSSASISFNRNLPWIDLA 120
V+++A++R+REYY+++FVP LL+ + +M + P++AA +S++ ++ PW
Sbjct 61 VNSAAYSRLREYYDFYFVPYRLLWNMAPTFFTNMPD-PHHAADLVSSVNLSQRHPWFTFF 119
Query 121 TINTAIGNVQSSASP-----NNFFGVLRSEGFKKLVSYLGYGETSPEKYV------DNLR 169
I +GN+ S + NFFG R E KL++YL YG + V D++
Sbjct 120 DIMEYLGNLNSLSGAYEKYQKNFFGFSRVELSVKLLNYLNYGFGKDYESVKVPSDSDDIV 179
Query 170 CSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDS---TPVASSLDLFSQNPNDS 226
S PL AYQKI +DY+R QW+ + P+ YN D+ G+ S P++S + +NP +
Sbjct 180 LSPFPLLAYQKICEDYFRDDQWQSAAPYRYNLDYLYGKSSGFHIPMSSFTNDAFKNP--T 237
Query 227 VFELRYANWNKDLWMGSLPNSQFGDVAAVS 256
+F+L Y N+ KD + G LP +Q+GDV+ S
Sbjct 238 MFDLNYCNFQKDYFTGMLPRAQYGDVSVAS 267
>gi|575094339|emb|CDL65730.1| unnamed protein product [uncultured bacterium]
Length=588
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 175/636 (28%), Positives = 268/636 (42%), Gaps = 112/636 (18%)
Query 16 RSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQPVDTSAFTRIREYYEW 75
++GFD+S + FT+ VG+LLPV++ + P DK IS F RTQP+ ++A R+ E+ E+
Sbjct 16 KNGFDMSQRHPFTSSVGQLLPVFYDYLNPGDKIRISANLFTRTQPMKSTAMARLTEHIEY 75
Query 76 FFVPLHLLYRNSNEAIMSMENQPNYAASSSASISFNRNLPWIDLATINTAIGNVQSSASP 135
FFVP ++ +++ SSS N +P+ ++ A+ +S S
Sbjct 76 FFVPFEQMFSLFGSVFYGIDD----YNSSSLVKHNNLTMPFFKSDAVSAALEAAYTSFSS 131
Query 136 N--------NFFGVLRSEGFKKLVSYLGYGETSPEKYVDNLRCSALPLY---AYQKIYQD 184
+ + G R G +L LGYG + L + + ++ AYQKI+ D
Sbjct 132 SINRKVLTPDMMGQPRVYGILRLSEMLGYGSLLLSNDNNLLPHADMSVFLFTAYQKIFND 191
Query 185 YYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNPNDSVFELRYANWNKDLWMGSL 244
+YR + + +YN D+ G+ T ++S+FEL Y W KD + +
Sbjct 192 FYRLDDYTSVQHKSYNVDYAQGQPIT-------------DNSMFELHYRPWKKDYFTNVI 238
Query 245 PNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDVNGYASDYAAGIRDGGINGA 304
PN F V S G G D + + + +G SD+ A
Sbjct 239 PNPYFSSVDNKS--------SFGGAGLFDRPVGLSITSFNFDG--SDFLQ---------A 279
Query 305 PDNGQTATAYPSGNLPSDYPYFYAKGSSKTPVGSIANPAHISGSDLNAQVSGQLNAQFSV 364
P + T + ++ P F +L ++ +A SV
Sbjct 280 PSDLST--------MENNQPIF---------------------QELPVNLTSASSAGLSV 310
Query 365 LQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPMQAHRSTRICGFDGSIDISAVEN 424
LR A K I Q G++Y AQ AHFG + I G + IS+VE+
Sbjct 311 SDLRYLYATDKLLRITQFAGKHYDAQTLAHFGKRVPQGVSGEVYYIGGQSQPLQISSVES 370
Query 425 TNLTSDEAIIRGKGLG---GQRINDPSN-----FTCTEHGIIMCIYHATPLLDYVPTGPD 476
T T D + G LG G+ + N F HG++M IY A P DY+ D
Sbjct 371 TATTFDSGDVVGSVLGELAGKGYSQTGNQKDFSFEAPCHGVLMAIYSAVPEADYLDERID 430
Query 477 LQLMTTVKGESFPVPEFDSLGMESLPMLSLVNSKAIGDVVARSYAGYVPRYISWKTSTDV 536
L T ++ F PEFDSLGME P L + +G+ S G+ RY K+ D+
Sbjct 431 Y-LNTLIQSNDFYKPEFDSLGMEPFPNYELDQYRMVGN---NSRLGWRYRYSGLKSKPDL 486
Query 537 VRGAFTDTLKSWVAPVDLDYMKAFFARNTDDSTIAENVLLTYSWFK------INPSVLNP 590
+ GAF TL+ WVA RN DS AE+ SW++ I+P+ L+
Sbjct 487 ISGAFKYTLRDWVA-----------VRN--DSRYAEDE----SWWQSAAFMYIDPAYLDN 529
Query 591 IFGVAVDSSWNTDQLLCNCQFN-VKVARNLSYDGMP 625
IF ++ Q N ++ + R+L Y P
Sbjct 530 IFELSFTPRLYQQQDSANVTYDGTFIDRSLVYQRDP 565
>gi|575094297|emb|CDL65693.1| unnamed protein product [uncultured bacterium]
Length=630
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 145/583 (25%), Positives = 228/583 (39%), Gaps = 95/583 (16%)
Query 16 RSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQPVDTSAFTRIREYYEW 75
R+ FD+S FT+ VG+LLPV++ P DK +I + +TQP+ + F ++ E ++
Sbjct 18 RNVFDMSQTLGFTSSVGQLLPVFYDVLNPGDKISIKSLFVTKTQPMQSDNFAKVTENVDY 77
Query 76 FFVPLHLLYRNSNEAIMSMENQPNYAASSSASISFNRNLPWIDLATINTAIGNVQSSAS- 134
FFVP E I S+ Y + S F++ +DL + + + + +
Sbjct 78 FFVPF--------EQIYSLFGSFFYQIADFNSSLFSKKGGALDLTSTHLPLASFDGLSYE 129
Query 135 ------------------PNN---------FFGVLRSEGFKKLVSYLGYGETSPEKYVDN 167
PNN +F LR + +Y + P+++ +
Sbjct 130 LFSSQYDIYSDDDDHIIFPNNTLDEYGVPNYFNHLRLMQLFGMSNYFTSDASQPDQFKPS 189
Query 168 LRCSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNPNDSV 227
+ LPL AYQKI+ DYYR W P +YN D + D+ + S+
Sbjct 190 INL-FLPL-AYQKIFNDYYRLDDWTAPDPTSYNID---------SSFDADIIRTSYYRSI 238
Query 228 FELRYANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDVNG 287
F+LRY W KD + N F S D + G G +S + + D +
Sbjct 239 FKLRYRPWKKDYYTNLSRNPYFN----ASYNADGA---YGPNGMQSLSSLATALPYDTDS 291
Query 288 YASDYAAGIRDGGINGAPDNGQTATAYPSGNLPSDYPYFYAKGSSKTPVGSIANPAHISG 347
+ + + G++ + A G +P P++ +G
Sbjct 292 VKDN--PLVENLGLSKPVGDESEAVTIKQG-IPRSLPFY-------------------AG 329
Query 348 SDLNAQVSGQLNAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPMQAHRS 407
D Q +V QLRA A K I Q G++Y AQ AHFG +
Sbjct 330 YDSPYLSQEQGIETLNVSQLRALYATDKLLRITQFAGKHYDAQTLAHFGKKVPQGVSGEV 389
Query 408 TRICGFDGSIDISAVE--NTNLTSD--EAIIRGKGLGGQRIND---PSNFTCTEHGIIMC 460
+ G + IS + ++ TSD + + +G + P F HGI+M
Sbjct 390 YYLGGQSQRLQISPITALSSGQTSDGSDTVFGEQGARAASVTQGQKPFTFEAPCHGILMA 449
Query 461 IYHATPLLDYVPTGPDLQLMTTVKGESFPVPEFDSLGME-------SLPMLSLVNSKAI- 512
IY A P +Y D ++ T F PE D++GM S+P +L +
Sbjct 450 IYSAVPEANYSCDAID-RINTLAYSNDFYKPELDNIGMSPLYSYEFSVPGYTLFRNPPTP 508
Query 513 --GDVVARSYAGYVPRYISWKTSTDVVRGAFTDTLKSWVAPVD 553
D A+S G+ RY +KT D GA TL+SW D
Sbjct 509 YSSDDAAQS-LGWQFRYSWFKTKVDRTCGALNRTLRSWCPKRD 550
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 143/567 (25%), Positives = 216/567 (38%), Gaps = 103/567 (18%)
Query 1 MSSLFSYGDIKNTPRRSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQP 60
M+++F+ +K PRR+ F+LS + T GEL+P+ K +P DKF ++ E R P
Sbjct 1 MANIFNSVKLKR-PRRNVFNLSYENKLTVNAGELIPIMCKPVVPGDKFRVNTEMLVRLAP 59
Query 61 VDTSAFTRIREYYEWFFVPLHLLYRN-----------SNEAIMSMENQPNYAASSSASIS 109
+ R+ + +FFVP L++ ++ + + P+ +++A S
Sbjct 60 LVAPMMHRVDVFTHYFFVPNRLIWNKWEDFITKGVDGTDSPVFPTYSFPSTVDTANAHNS 119
Query 110 FNRNLPW--IDLATINTAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGETSPEKYVDN 167
F W + L +IN V SPN GV GFK
Sbjct 120 FGDGSLWDYLGLPSINQIGEAVFQVQSPN---GVKAPAGFK------------------- 157
Query 168 LRCSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNPNDSV 227
SALP AY IY +YYR T + G PV SSL
Sbjct 158 --VSALPFRAYHLIYNEYYRDQNLTSELEITLDS----GNYQLPVNSSL----------- 200
Query 228 FELRYANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDVNG 287
++L W KD + +LP Q G V + G ++ M G
Sbjct 201 WQLHRRAWEKDYFTSALPWVQRGPEVTVP-----------INGGGEIPVEMK------EG 243
Query 288 YASDYAAGIRDGGINGAPDNGQTATAYPSGNLPSDYPYFYAKGS--SKTPVGSIANPAHI 345
+A+ Q T +P S Y+ S S +GSI A I
Sbjct 244 FAA------------------QKITTFPDRKPISGSEVLYSAPSVLSYGQIGSIKGQALI 285
Query 346 SGSDLNAQVSGQLNAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTNPMQAH 405
+ V ++ +R + ALQ+W E +G Y Q+ +HFGV ++ +
Sbjct 286 EPDNF---VVNTDQMGVNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQ 342
Query 406 RSTRICGFDGSIDISAV---ENTNLTSDEAIIRGKGLGGQRINDPSNFTCTEHGIIMCIY 462
R + G I +S V +T+ TS +A + G G+ +N EHG IM I
Sbjct 343 RPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISAG-VNHGFTRYFEEHGYIMGIM 401
Query 463 HATPLLDYVPTGP-DLQLMTTVKGESFPVPEFDSLGMESLPMLSLVNSKAIGDVVARSYA 521
P Y P D + + F PEF LG + + L +++ D
Sbjct 402 SIRPRTGYQQGVPKDFRKFDNM---DFYFPEFAHLGEQEIKNEELYLNES--DAANEGTF 456
Query 522 GYVPRYISWKTSTDVVRGAFTDTLKSW 548
GY PRY +K S + V G F + W
Sbjct 457 GYTPRYAEYKYSQNEVHGDFRGNMAFW 483
>gi|565841287|ref|WP_023924568.1| hypothetical protein [Prevotella nigrescens]
gi|564729907|gb|ETD29851.1| hypothetical protein HMPREF1173_00033 [Prevotella nigrescens
CC14M]
Length=656
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/542 (24%), Positives = 211/542 (39%), Gaps = 135/542 (25%)
Query 129 VQSSASPNNFFGVLRSEGFKKLVSYLGYGETSPEKYVD---------------------- 166
V S S + G L G +L+ +LGYG + VD
Sbjct 201 VVSKLSSKDALGYLYKFGAFRLLHFLGYGVDNNGFIVDFNASYAAGTGEIVKNVLAKKTY 260
Query 167 ---NLRCSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFSQNP 223
+++ + L AYQ+IY D+YR+ WE ++P +N D+ +S ++ L
Sbjct 261 KLPDIKANVFRLLAYQRIYNDFYRNDLWEAAQPDVFNVDWCCNNNSLDISDELVY----- 315
Query 224 NDSVFELRYANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYG 283
+ +LRY +W+KD + P + +
Sbjct 316 --KMCQLRYRHWSKDWVTSAYPTASY---------------------------------- 339
Query 284 DVNGYASDYAAGIRDGGINGAPDNGQTATAYPSGNLPSDYPYFYAKGS----SKTPVGSI 339
D GI PD T + + + D +GS GS+
Sbjct 340 --------------DKGIFELPDYINGNTGFATTEVKRD--VVNNRGSQLEIKSMDAGSL 383
Query 340 A--NPAHISGSDLNAQVSGQLNAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGV 397
N ++IS +D+ A + + + + RAA L +Y+ Q+ AHFG
Sbjct 384 GSNNISYISPNDIRAMFALEKMLE----RTRAANGL------------DYSNQIAAHFGF 427
Query 398 STNPMQAHRSTRICGFDGSIDISAVENTNLTSDEAI---------IRGKGLGGQRINDPS 448
+ + ++ I GFD I IS V T+ S + + GKG+G S
Sbjct 428 KVPESRKNCASFIGGFDNQISISEVVTTSNGSVDGTASTGSVVGQVFGKGIGAMNSGHIS 487
Query 449 NFTCTEHGIIMCIYHATPLLDYVPTGPDLQLMTTVKGESFPVPEFDSLGMESLPM----L 504
+ EHG+IMCIY P +DY D E + PEF++LGM+ + L
Sbjct 488 -YDVKEHGLIMCIYSIAPQVDYDARELD-PFNRKFSREDYFQPEFENLGMQPVIQSDLCL 545
Query 505 SLVNSKAIGDVVARSYAGYVPRYISWKTSTDVVRGAFTD--TLKSWVAPVDLDYMKAFFA 562
+ ++K+ + GY RY+ +KT+ D++ G F +L +W P + +Y F
Sbjct 546 CINSAKSDSSDQHNNVLGYSARYLEYKTARDIIFGEFMSGGSLSAWATPKN-NYTFEFGK 604
Query 563 RNTDDSTIAENVLLTYSWFKINPSVLNPIFGVAVDSSWNTDQLLCNCQFNVKVARNLSYD 622
+ D ++P VL PIF V + S +TDQ L N F+VK R + +
Sbjct 605 LSLPD-------------LLVDPKVLEPIFAVKYNGSMSTDQFLVNSYFDVKAIRPMQVN 651
Query 623 GM 624
M
Sbjct 652 DM 653
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/110 (33%), Positives = 60/110 (55%), Gaps = 3/110 (3%)
Query 16 RSGFDLSNKCAFTAKVGELLPVYWKFCLPADKFNISQEWFARTQPVDTSAFTRIREYYEW 75
R+G+DLS++ F+A G LLP+ P +KF IS + R QP++T+AF R +EYY +
Sbjct 15 RNGYDLSSRRIFSAPAGALLPIATWEANPGEKFRISVQDLVRAQPLNTAAFARCKEYYHF 74
Query 76 FFVPLHLLYRNSNEAIMSMENQPNYAASSSASISFN---RNLPWIDLATI 122
FFVP L+++S+ + + + FN + +P +L +
Sbjct 75 FFVPYKSLWQHSDRFFTGVTEGDSAFSKPDGKTDFNFVPKTVPMFNLKDV 124
Lambda K H a alpha
0.317 0.132 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4727351115384