bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-24_CDS_annotation_glimmer3.pl_2_2
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
gi|490418709|ref|WP_004291032.1| hypothetical protein 356 2e-110
gi|575094354|emb|CDL65742.1| unnamed protein product 350 9e-108
gi|496050829|ref|WP_008775336.1| hypothetical protein 347 7e-107
gi|494822885|ref|WP_007558293.1| hypothetical protein 327 4e-99
gi|575094321|emb|CDL65708.1| unnamed protein product 247 1e-68
gi|547226430|ref|WP_021963493.1| putative uncharacterized protein 241 3e-67
gi|494308783|ref|WP_007173938.1| hypothetical protein 154 7e-37
gi|575094339|emb|CDL65730.1| unnamed protein product 152 4e-36
gi|575094297|emb|CDL65693.1| unnamed protein product 142 2e-32
gi|496521299|ref|WP_009229582.1| capsid protein 120 2e-25
>gi|490418709|ref|WP_004291032.1| hypothetical protein [Bacteroides eggerthii]
gi|217986636|gb|EEC52970.1| putative capsid protein (F protein) [Bacteroides eggerthii DSM
20697]
Length=578
Score = 356 bits (913), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 242/656 (37%), Positives = 334/656 (51%), Gaps = 90/656 (14%)
Query 3 SNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPV 62
+N+ S +RN P R+GFDLS + FT+KAGELLPV K V PGD F+I + FTRTQPV
Sbjct 2 ANIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLKAFTRTQPV 61
Query 63 NTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASGI--VSNKIVTSDIPWTLL 120
NTAA+ RIREY D++FVP L+ L M DNP A I N +++ ++P+
Sbjct 62 NTAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYM-- 119
Query 121 GHDSKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSAS 180
IA+ + + +SA D N+FG+N KL L YGN+ S
Sbjct 120 ----TSEAIASYINAL--STASALADYKSNYFGYNRSKSSVKLLEYLGYGNYES------ 167
Query 181 TPGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYS 240
D++ ++ NI YQKIY+D +R SQWE+ P T+N D+
Sbjct 168 --------FLTDDWNTAPLMANLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYLD 219
Query 241 GGNVFNVFALGAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDITTDS 300
G ++ L A ST + + N F LRY NW KDLF GV+P+ Q G+ +V IT D
Sbjct 220 GSSM----NLDNAYST--EFYQNYNFFDLRYCNWQKDLFHGVLPHQQYGETAVASITPD- 272
Query 301 ATRSYPVSLFSSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEKWDSSIKAKT 360
T +S FS+ G + G A + P A DT
Sbjct 273 VTGKLTLSNFSTV-GTSPTTASGTATKNLP---AFDT----------------------- 305
Query 361 WvgvnnvgsgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQIYAHFGV 420
S+L LR AE +QK++E++Q ++ +DQ+ H+GV
Sbjct 306 ---------------------VGDLSILVLRQAEFLQKWKEITQSGNKDYKDQLEKHWGV 344
Query 421 SLSPALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMgkgvgtgqggTSFSSD-EYGV 479
S+ S+ C +GG +S+IDI+EV+N N+ G ADI GKGVG G +F+S+ YG+
Sbjct 345 SVGDGFSELCTYLGGVSSSIDINEVINTNITGSAAADIAGKGVGVANGEINFNSNGRYGL 404
Query 480 LMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDP 539
+M IYH +PLLDY L N++D PEFD +GMQS+ + N + +
Sbjct 405 IMCIYHCLPLLDYTTDMLDPAFLKVNSTDYAIPEFDRVGMQSMPLVQLMN--PLRSFANA 462
Query 540 TASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYYS--- 596
+ V+GYVPR+ID KT D+ G F+ TL SWV + K + A S
Sbjct 463 SGLVLGYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGNISVLKQVTLPNDAPPIEPSEPV 522
Query 597 -----LNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNFDYDGMPY 647
+N+ FFKVNP LD IF V+A +TDQFL S + D+KAVRN D DG+PY
Sbjct 523 PSVAPMNFTFFKVNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY 578
>gi|575094354|emb|CDL65742.1| unnamed protein product [uncultured bacterium]
Length=615
Score = 350 bits (898), Expect = 9e-108, Method: Compositional matrix adjust.
Identities = 238/667 (36%), Positives = 343/667 (51%), Gaps = 77/667 (12%)
Query 6 FSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPVNTA 65
S D++N P R+GFDLS + FT+KAGELLPV K+V PGD F I + FTRTQP+NT+
Sbjct 1 MSMADIKNRPSRNGFDLSFKKNFTAKAGELLPVMTKVVLPGDSFNINLRSFTRTQPLNTS 60
Query 66 AYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASG--IVSNKIVTSDIPWTLLGHD 123
A+ R+REY D+YFVP + + M N ASG + N ++ +P+
Sbjct 61 AFARMREYYDFYFVPFEQMWNKFDSCITQMNANVQHASGPTLDDNTPLSGRMPYFTSEQ- 119
Query 124 SKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSAST-- 181
IA+ L ++A+ +P FGFN TL KL L YG++ S D +T
Sbjct 120 -----IADYLNDQA---TAARKNP----FGFNRSTLTCKLLQYLGYGDYNSFDSETNTWS 167
Query 182 PGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYSG 241
L + L S F P YQKIY+D +R++QWEK P T+N D+ G
Sbjct 168 AKPLLYNLELSPF--------------PLLAYQKIYSDFYRYTQWEKTNPSTFNLDYIKG 213
Query 242 GNVFNVFALGAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDIT---- 297
+ + G + NN F +RY N+ KD+F GV+P +Q G SVV I
Sbjct 214 TSDLQMDLTGLPS-------DDNNFFDIRYCNYQKDMFHGVLPVAQYGSASVVPINGQLN 266
Query 298 ------------TDSATRSYPVSLFSSASGPNGINKLGAAIPDAPFNEATDT-PSTYNFS 344
T + P + + + G G++ + + N PS Y F
Sbjct 267 VISNGDSGPIFKTSTPDPGTPGTSYVTVGGNIGVDNRSFGVSGSTLNVGKSADPSGYGFP 326
Query 345 IDFGTEKWDSSIKAKTWvgvnnvgsgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQ 404
++S ++ W N + G VP +L LR AE +QK++EVS
Sbjct 327 S-------NASTRSLLWENPNLIIENNQGFYVP---------ILALRQAEFLQKWKEVSV 370
Query 405 VADQTVRDQIYAHFGVSLSPALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMgkgvg 464
++ + QI H+G+ +S LS +GG A+++DI+EV+NNN+ G+N ADI GKG
Sbjct 371 SGEEDYKSQIEKHWGIKVSDFLSHQARYLGGCATSLDINEVINNNITGDNAADIAGKGTF 430
Query 465 tgqggTSFSSD-EYGVLMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLH 523
TG G F S EYG++M IYHV+P++DYV +G H + + P PE D IGM+S+
Sbjct 431 TGNGSIRFESKGEYGIIMCIYHVLPIVDYVGSGVDHSCTLVDATSFPIPELDQIGMESVP 490
Query 524 FGRFFNYKSDKFTFDPTA-SVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSK 582
R N + T P+A + +GY PR+ID KT D G F +L++W P+ + L+
Sbjct 491 LVRAMNPVKESDT--PSADTFLGYAPRYIDWKTSVDRSVGDFADSLRTWCLPVGDKELTS 548
Query 583 WIDSTVSAGQTYY--SLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNF 640
+ S+ GFFKVNPS++D +F V ADS++ TD+FL S + DVK VRN
Sbjct 549 ANSLNFPSNPNVEPDSIAAGFFKVNPSIVDPLFAVVADSTVKTDEFLCSSFFDVKVVRNL 608
Query 641 DYDGMPY 647
D +G+PY
Sbjct 609 DVNGLPY 615
>gi|496050829|ref|WP_008775336.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448893|gb|EEO54684.1| putative capsid protein (F protein) [Bacteroides sp. 2_2_4]
Length=580
Score = 347 bits (889), Expect = 7e-107, Method: Compositional matrix adjust.
Identities = 241/660 (37%), Positives = 338/660 (51%), Gaps = 96/660 (15%)
Query 3 SNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPV 62
+N+ S +RN R+GFDLS + FT+K GELLPV V PGDK+ I + FTRTQP+
Sbjct 2 ANIMSLKSLRNKTSRNGFDLSSKRNFTAKPGELLPVKCWEVLPGDKWSIDLKSFTRTQPL 61
Query 63 NTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASGIV--SNKIVTSDIPWTLL 120
NTAA+ R+REY D+YFVP L+ L M DNP A+ + +N+ + +P
Sbjct 62 NTAAFARMREYYDFYFVPYNLLWNKANTVLTQMYDNPQHATSYIPSANQALAGVMP---- 117
Query 121 GHDSKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSAS 180
+ GIA+ L + D + N+FG++ AKL L YGNF Y+ +
Sbjct 118 --NVTCKGIADYL-NLVAPDVTTTNSYEKNYFGYSRSLGTAKLLEYLGYGNF----YTYA 170
Query 181 TPGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYS 240
T + ++ S +L+ +NI YQKIYADH R SQWEK P +N D+ S
Sbjct 171 TSKNNTWTKSPLSSNLQ-------LNIYGVLAYQKIYADHIRDSQWEKVSPSCFNVDYLS 223
Query 241 GGNVFNVFALGAADS--TLKTYLEGN------NLFTLRYANWPKDLFMGVMPNSQLGDVS 292
G DS T+ + + G N+F LRY NW KDLF GV+P Q G
Sbjct 224 G----------TVDSAMTIDSMITGQGFAPFYNMFDLRYCNWQKDLFHGVLPRQQYG--- 270
Query 293 VVDITTDSATRSYPVSLFSSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEKW 352
D + S +S P+G + +PF+ T N S
Sbjct 271 --DTAAVNVNLSNVLSAQYMVQTPDG-----DPVGGSPFSSTGVNLQTVNGS-------- 315
Query 353 DSSIKAKTWvgvnnvgsgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRD 412
+F+VL LR AE +QK++E++Q ++ +D
Sbjct 316 ------------------------------GTFTVLALRQAEFLQKWKEITQSGNKDYKD 345
Query 413 QIYAHFGVSLSPALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMgkgvgtgqggTSF 472
QI H+ VS+ A S+ +GG+ +++DI+EVVNNN+ G N ADI GKGV G G SF
Sbjct 346 QIEKHWNVSVGEAYSEMSLYLGGTTASLDINEVVNNNITGSNAADIAGKGVVVGNGRISF 405
Query 473 SSDE-YGVLMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYK 531
+ E YG++M IYH +PLLDY N++D PEFD +GM+S+ N
Sbjct 406 DAGERYGLIMCIYHSLPLLDYTTDLVNPAFTKINSTDFAIPEFDRVGMESVPLVSLMN-- 463
Query 532 SDKFTFDPTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWI----DST 587
+ +++ +S++GY PR+I KTD D GAF++TLKSWV D + + + D
Sbjct 464 PLQSSYNVGSSILGYAPRYISYKTDVDSSVGAFKTTLKSWVMSYDNQSVINQLNYQDDPN 523
Query 588 VSAGQTYYSLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNFDYDGMPY 647
S G +NY FKVNP+ +D +F V A +S+DTDQFL S + DVK VRN D DG+PY
Sbjct 524 NSPGTL---VNYTNFKVNPNCVDPLFAVAASNSIDTDQFLCSSFFDVKVVRNLDTDGLPY 580
>gi|494822885|ref|WP_007558293.1| hypothetical protein [Bacteroides plebeius]
gi|198272099|gb|EDY96368.1| putative capsid protein (F protein) [Bacteroides plebeius DSM
17135]
Length=613
Score = 327 bits (839), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 230/661 (35%), Positives = 346/661 (52%), Gaps = 72/661 (11%)
Query 3 SNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPV 62
+N+ S VRN P R+G+DL+++I FT+KAG L+PV++ V P D + F RTQP+
Sbjct 9 ANIMSMKSVRNKPTRAGYDLTQKINFTAKAGSLIPVWWTPVLPFDDLNATVKSFVRTQPL 68
Query 63 NTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASG--IVSNKIVTSDIPWTLL 120
NTAA+ R+R Y D+YFVP R + P A+ M+ N + ASG + N ++ ++P+
Sbjct 69 NTAAFARMRGYFDFYFVPFRQMWNKFPTAITQMRTNLLHASGPVLADNVPLSDELPYFTA 128
Query 121 GHDSKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSAS 180
+A+ + + DS Q FG+ L + L YG+F A+
Sbjct 129 EQ------VADYIVSL--ADSKNQ-------FGYYRAWLVCIILEYLGYGDFYPYIVEAA 173
Query 181 TPGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYS 240
G + + R ++ + P YQKIYAD R++QWE++ P T+N D+ S
Sbjct 174 -------GGEGATWATRPMLNNLKFSPFPLFAYQKIYADFNRYTQWERSNPSTFNIDYIS 226
Query 241 GGNVFNVFALGAADS-----TLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVD 295
G +ADS T++ + + NLF +RY+NW +DL G +P +Q G+ S V
Sbjct 227 G----------SADSLQLDFTVEGFKDSFNLFDMRYSNWQRDLLHGTIPQAQYGEASAVP 276
Query 296 ITTDSATRSYPVSLFSSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEKWDSS 355
++ P + +G +G+ L N S Y
Sbjct 277 VSGSMQVVEGPTPP-AFTTGQDGVAFLNG-------NVTIQGSSGY-------------- 314
Query 356 IKAKTWvgvnnvgsgvlgvtvPGSQLAASF--SVLQLRMAEAVQKYREVSQVADQTVRDQ 413
++A+T VG + + + + +SF S+L LR AEA QK++EV+ +++ Q
Sbjct 315 LQAQTSVGESRILRFNNTNSGLIVEGDSSFGVSILALRRAEAAQKWKEVALASEEDYPSQ 374
Query 414 IYAHFGVSLSPALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMgkgvgtgqggTSFS 473
I AH+G S++ A SD C +G ++ I+EVVNNN+ GEN ADI GKG +G G +F+
Sbjct 375 IEAHWGQSVNKAYSDMCQWLGSINIDLSINEVVNNNITGENAADIAGKGTMSGNGSINFN 434
Query 474 -SDEYGVLMAIYHVVPLLDYVITGQPH-ELLYTNTSDLPFPEFDSIGMQSLHFGRFFN-- 529
+YG++M ++HV+P LDY IT PH TN D P PEFD IGM+ + R N
Sbjct 435 VGGQYGIVMCVFHVLPQLDY-ITSAPHFGTTLTNVLDFPIPEFDKIGMEQVPVIRGLNPV 493
Query 530 -YKSDKFTFDPTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYL--SKWIDS 586
K F P GY P++ + KT D+ G FR +LK+W+ P D E L + +D
Sbjct 494 KPKDGDFKVSPNL-YFGYAPQYYNWKTTLDKSMGEFRRSLKTWIIPFDDEALLAADSVDF 552
Query 587 TVSAGQTYYSLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNFDYDGMP 646
+ S+ GFFKV+PSVLD++F VKA+S ++TDQFL S DV VR+ D +G+P
Sbjct 553 PDNPNVEADSVKAGFFKVSPSVLDNLFAVKANSDLNTDQFLCSTLFDVNVVRSLDPNGLP 612
Query 647 Y 647
Y
Sbjct 613 Y 613
>gi|575094321|emb|CDL65708.1| unnamed protein product [uncultured bacterium]
Length=642
Score = 247 bits (630), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 191/667 (29%), Positives = 307/667 (46%), Gaps = 53/667 (8%)
Query 3 SNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPV 62
SN+ ++N P R+ FDLS R FT+K GELLP + + + PGD ++ FTRT P+
Sbjct 5 SNIMGLHGLKNKPSRNSFDLSHRNMFTAKVGELLPCFVQELNPGDSVKVSSSYFTRTAPL 64
Query 63 NTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQ------ASGIVSNKIVTSDIP 116
+ A+TR+RE + ++FVP + K ++NM N AS +V N+ VT+ +P
Sbjct 65 QSNAFTRLRENVQYFFVPYSALWKYFDSQVLNMTKNANGGDISRIASSLVGNQKVTTQMP 124
Query 117 WTLLGHDSKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKD 176
+ + + + + R G S + P N G AKL +L YGNF +
Sbjct 125 --CVNYKTLHAYLLKFINRSTVG-SDGSVGPEFN-RGCYRHAESAKLLQLLGYGNFPEQF 180
Query 177 YSASTPGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNF 236
+ D S +F YN+S ++I Y KI DH+ + QW+ N
Sbjct 181 ANFKVNND-KHNQSGQNFKDVTYNNSPYLSIFRLLAYHKICNDHYLYRQWQPYNASLCNV 239
Query 237 DWYSGGNVFNVFALGAA-----DSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDV 291
D+ + N ++ ++ A D ++K E NL +R++N P D F GV+P SQ G
Sbjct 240 DYLT-PNSSSLLSIDDALLSIPDDSIKA--EKLNLLDMRFSNLPLDYFTGVLPTSQFGSE 296
Query 292 SVVDITTDSATRSYPVSLFSSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEK 351
SVV++ +A+ S L + S +G + + + + + N +D
Sbjct 297 SVVNLNLGNASGS--AVLNGTTSKDSG--RWRTTTGEWEMEQRVASSANGNLKLDNSNGT 352
Query 352 WDSSIKAKTWvgvnnvgsgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVR 411
+ S G + L+ + S++ LR A A QKY+E+ D +
Sbjct 353 FIS------------HDHTFSGNVAINTSLSGNLSIIALRNALAAQKYKEIQLANDVDFQ 400
Query 412 DQIYAHFGVSLSPALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMgkgvgtgqggTS 471
Q+ AHFG+ ++ F +GGS+S I+I+E +N NL+G+N+A G G
Sbjct 401 SQVEAHFGIKPDEKNENSLF-IGGSSSMININEQINQNLSGDNKATYGAAPQGNGSASIK 459
Query 472 FSSDEYGVLMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSL--------- 522
F++ YGV++ IY P+LD+ G L T+ SD PE DSIGMQ
Sbjct 460 FTAKTYGVVIGIYRCTPVLDFAHLGIDRTLFKTDASDFVIPEMDSIGMQQTFRCEVAAPA 519
Query 523 -HFGRFFNYKSDKFTFDPTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLS 581
+ F ++ + + GY PR+ + KT YD GAF +LKSWV ++ + +
Sbjct 520 PYNDEFKAFRVGDGSSPDMSETYGYAPRYSEFKTSYDRYNGAFCHSLKSWVTGINFDAIQ 579
Query 582 KWIDSTVSAGQTYYSLNY-GFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNF 640
+ T+ +N F P ++ ++F V + ++ D DQ + A RN
Sbjct 580 N------NVWNTWAGINAPNMFACRPDIVKNLFLVSSTNNSDDDQLYVGMVNMCYATRNL 633
Query 641 DYDGMPY 647
G+PY
Sbjct 634 SRYGLPY 640
>gi|547226430|ref|WP_021963493.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103382|emb|CCY83994.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=573
Score = 241 bits (616), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/270 (48%), Positives = 173/270 (64%), Gaps = 2/270 (1%)
Query 379 SQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQIYAHFGVSLSPALSDTCFRVGGSAS 438
S A SVL LR AE +QK+RE++Q + Q+ HF VS S LS C +GG S
Sbjct 305 SNTTAGLSVLALRQAECLQKWREIAQSGKMDYQTQMQKHFNVSPSATLSGHCKYLGGWTS 364
Query 439 NIDISEVVNNNLAGENQADIMgkgvgtgq-ggTSFSSDEYGVLMAIYHVVPLLDYVITGQ 497
N+DISEVVN NL G+NQADI GKG GT F S E+G++M IYH +PLLD+ I
Sbjct 365 NLDISEVVNTNLTGDNQADIQGKGTGTLNGNKVDFESSEHGIIMCIYHCLPLLDWSINRI 424
Query 498 PHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDPTASVMGYVPRFIDLKTDY 557
+ T +D PEFDS+GMQ L+ + + DP++ MGYVPR+ DLKT
Sbjct 425 ARQNFKTTFTDYAIPEFDSVGMQQLYPSEMI-FGLEDLPSDPSSINMGYVPRYADLKTSI 483
Query 558 DEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYYSLNYGFFKVNPSVLDSIFKVKA 617
DE++G+F TL SWV+PL Y+S + + AG + ++ Y FFKVNP ++D+IF VKA
Sbjct 484 DEIHGSFIDTLVSWVSPLTDSYISAYRQACKDAGFSDITMTYNFFKVNPHIVDNIFGVKA 543
Query 618 DSSMDTDQFLSSLYLDVKAVRNFDYDGMPY 647
DS+++TDQ L + Y D+KAVRNFDY+G+PY
Sbjct 544 DSTINTDQLLINSYFDIKAVRNFDYNGLPY 573
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 151/294 (51%), Gaps = 31/294 (11%)
Query 3 SNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPV 62
S++ S ++N R+GFDLS + FT+K GELLP+ K VYPGDKF IR Q FTRTQPV
Sbjct 2 SSVMSLTALKNSVKRNGFDLSFKNAFTAKVGELLPIMCKEVYPGDKFNIRGQAFTRTQPV 61
Query 63 NTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASGIVSNKIVTSDIPWTLLGH 122
N+AAY+R+REY D+YFVP RL+ P NM D P A+ +VS+ ++ PW
Sbjct 62 NSAAYSRLREYYDFYFVPYRLLWNMAPTFFTNMPD-PHHAADLVSSVNLSQRHPWFTFFD 120
Query 123 DSKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDY-SAST 181
+ LG N L Y+ NFFGF+ L KL L YG KDY S
Sbjct 121 IMEYLGNLNSLSGAYEKYQK-------NFFGFSRVELSVKLLNYLNYG--FGKDYESVKV 171
Query 182 PGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDW-YS 240
P D + ++ P YQKI D+FR QW+ PY YN D+ Y
Sbjct 172 PSD---------------SDDIVLSPFPLLAYQKICEDYFRDDQWQSAAPYRYNLDYLYG 216
Query 241 GGNVFNVFALGAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVV 294
+ F++ + K +F L Y N+ KD F G++P +Q GDVSV
Sbjct 217 KSSGFHIPMSSFTNDAFKN----PTMFDLNYCNFQKDYFTGMLPRAQYGDVSVA 266
>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=553
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 168/644 (26%), Positives = 268/644 (42%), Gaps = 111/644 (17%)
Query 11 VRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPVNTAAYTRI 70
R + +R+ FDLS+R FT+ AG LLPV + P D +I Q F RT P+NTAA+ +
Sbjct 11 TRPNRNRNAFDLSQRHLFTAHAGMLLPVLNLDLIPHDHVEINAQDFMRTLPMNTAAFASM 70
Query 71 REYLDWYFVPLRLINKNLPQALMNMQDNPVQASGIVSNKIVTSDIPWTLLGHDSKPLGIA 130
R +++FVP + Q + M D A+ + +P+ +
Sbjct 71 RGVYEFFFVPYHQLWAQFDQFITGMNDFHSSANKSIQGGTSPLQVPY---------FNVD 121
Query 131 NLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSASTPGDLSFGLS 190
++ + G S + F G +L +L YG + + P ++S GL
Sbjct 122 SVFNSLNTGKESGSGSTDDLQYKFKYGAF--RLLDLLGYGRKFDS-FGTAYPDNVS-GLK 177
Query 191 KSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYSGGNVFNVFAL 250
N Y ++ Y KIY D++R S +E + ++NFD + GG V
Sbjct 178 N--------NLDYNCSVFRILAYNKIYQDYYRNSNYENFDTDSFNFDKFKGGLV------ 223
Query 251 GAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDITTDSATRSYPVSLF 310
D+ + +LF LRY N D F + + LF
Sbjct 224 ---DAKVVA-----DLFKLRYRNAQTDYFTNLRQS----------------------QLF 253
Query 311 SSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEKWDSSIKAKTWvgvnnvgsg 370
S + ++ + A D ++ ++ + NF +D + + D
Sbjct 254 SFTTAFEDVDNINIAPRDYVKSDGSNF-TRVNFGVDTDSSEGD----------------- 295
Query 371 vlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQIYAHFGVSLSPALSDTC 430
FSV LR A AV K V+ A +T +DQ+ AH+GV + +
Sbjct 296 --------------FSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRV 341
Query 431 FRVGGSASNIDISEVVNNN--LAGENQAD------IMgkgvgtgqggTSFSSDEYGVLMA 482
+GG S++ +S+V + A E + + + GKG G+G+G F + E+GVLM
Sbjct 342 NYLGGFDSDMQVSDVTQTSGTTATEYKPEAGYLGRVAGKGTGSGRGRIVFDAKEHGVLMC 401
Query 483 IYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDPTAS 542
IY +VP + Y T + + D PEF+++GMQ L+ +Y S T DP
Sbjct 402 IYSLVPQIQYDCTRLDPMVDKLDRFDYFTPEFENLGMQPLN----SSYISSFCTTDPKNP 457
Query 543 VMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYYSLNYGFF 602
V+GY PR+ + KT D +G F + + LS W S T+ L F
Sbjct 458 VLGYQPRYSEYKTALDVNHGQFAQS----------DALSSWSVSRFRRWTTFPQLEIADF 507
Query 603 KVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNFDYDGMP 646
K++P L+SIF V + + D ++ V + DGMP
Sbjct 508 KIDPGCLNSIFPVDYNGTEANDCVYGGCNFNIVKVSDMSVDGMP 551
>gi|575094339|emb|CDL65730.1| unnamed protein product [uncultured bacterium]
Length=588
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 160/616 (26%), Positives = 266/616 (43%), Gaps = 105/616 (17%)
Query 12 RNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPVNTAAYTRIR 71
R + ++GFD+S+R FTS G+LLPV+Y + PGDK +I LFTRTQP+ + A R+
Sbjct 11 RANLSKNGFDMSQRHPFTSSVGQLLPVFYDYLNPGDKIRISANLFTRTQPMKSTAMARLT 70
Query 72 EYLDWYFVPLRLINKNLPQALMNMQDNPVQASGIVSNKIVTSDIPWTLLGHDSKPLGIAN 131
E+++++FVP + + D +S +V + +T +P+ K ++
Sbjct 71 EHIEYFFVPFEQMFSLFGSVFYGIDD--YNSSSLVKHNNLT--MPFF------KSDAVSA 120
Query 132 LLFRMYKGDSSAQIDPVL--NFFGFNSGTLGAKLAMMLRYGNFISKDYSASTP-GDLSFG 188
L Y SS+ VL + G +L+ ML YG+ + + + P D+S
Sbjct 121 ALEAAYTSFSSSINRKVLTPDMMGQPRVYGILRLSEMLGYGSLLLSNDNNLLPHADMS-- 178
Query 189 LSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYSGGNVFNVF 248
+ F YQKI+ D +R + + +YN D+ G + +
Sbjct 179 ------------------VFLFTAYQKIFNDFYRLDDYTSVQHKSYNVDYAQGQPITD-- 218
Query 249 ALGAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDITTDSATRSYPVS 308
N++F L Y W KD F V+PN
Sbjct 219 ---------------NSMFELHYRPWKKDYFTNVIPNP---------------------- 241
Query 309 LFSSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEKWDSSIKAKTWvgvnnvg 368
FSS + GA + D P + +++NF G++ + T +
Sbjct 242 YFSSVDNKSSFG--GAGLFDRPVGLSI---TSFNFD---GSDFLQAPSDLSTMENNQPIF 293
Query 369 sgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQIYAHFGVSLSPALSD 428
+ S +A SV LR A K ++Q A + Q AHFG + +S
Sbjct 294 QELPVNLTSAS--SAGLSVSDLRYLYATDKLLRITQFAGKHYDAQTLAHFGKRVPQGVSG 351
Query 429 TCFRVGGSASNIDISEVVNNNL---AGENQADIMgkgvgtgqggT------SFSSDEYGV 479
+ +GG + + IS V + +G+ ++G+ G G T SF + +GV
Sbjct 352 EVYYIGGQSQPLQISSVESTATTFDSGDVVGSVLGELAGKGYSQTGNQKDFSFEAPCHGV 411
Query 480 LMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDP 539
LMAIY VP DY+ + ++D PEFDS+GM+ F NY+ D++
Sbjct 412 LMAIYSAVPEADYLDERIDYLNTLIQSNDFYKPEFDSLGMEP-----FPNYELDQYRMVG 466
Query 540 TASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYYSLNY 599
S +G+ R+ LK+ D + GAF+ TL+ WVA + DS + ++++ +
Sbjct 467 NNSRLGWRYRYSGLKSKPDLISGAFKYTLRDWVAVRN--------DSRYAEDESWWQ-SA 517
Query 600 GFFKVNPSVLDSIFKV 615
F ++P+ LD+IF++
Sbjct 518 AFMYIDPAYLDNIFEL 533
>gi|575094297|emb|CDL65693.1| unnamed protein product [uncultured bacterium]
Length=630
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 169/640 (26%), Positives = 260/640 (41%), Gaps = 92/640 (14%)
Query 3 SNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPV 62
+NLF D R+ FD+S+ + FTS G+LLPV+Y ++ PGDK I+ T+TQP+
Sbjct 4 ANLFKRPDHVAKLGRNVFDMSQTLGFTSSVGQLLPVFYDVLNPGDKISIKSLFVTKTQPM 63
Query 63 NTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASGIVSNKIVTSDIPWT---L 119
+ + ++ E +D++FVP I + D S + S K D+ T L
Sbjct 64 QSDNFAKVTENVDYFFVPFEQIYSLFGSFFYQIADF---NSSLFSKKGGALDLTSTHLPL 120
Query 120 LGHDSKPLGIANLLFRMYKGDSSAQIDP--VLNFFGFNSGTLGAKLAMMLRYGNFISKDY 177
D + + + +Y D I P L+ +G + +L + N+ + D
Sbjct 121 ASFDGLSYELFSSQYDIYSDDDDHIIFPNNTLDEYGVPNYFNHLRLMQLFGMSNYFTSD- 179
Query 178 SASTPGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFD 237
AS P K +L LP A YQKI+ D++R W +P +YN D
Sbjct 180 -ASQPDQF-----KPSINL----------FLPLA-YQKIFNDYYRLDDWTAPDPTSYNID 222
Query 238 WYSGGNVFNVFALGAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDIT 297
+ F+ AD +Y ++F LRY W KD + + N D
Sbjct 223 -----SSFD------ADIIRTSYYR--SIFKLRYRPWKKDYYTNLSRNPYFNASYNAD-- 267
Query 298 TDSATRSYPVSLFSSASGPNGINKLGAAIPDAPF--NEATDTPSTYNFSID--FGTEKWD 353
A GPNG+ L + P+ + D P N + G E
Sbjct 268 --------------GAYGPNGMQSLSSLATALPYDTDSVKDNPLVENLGLSKPVGDESEA 313
Query 354 SSIKAKTWvgvnnvgsgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQ 413
+IK + +G + Q + +V QLR A K ++Q A + Q
Sbjct 314 VTIK-QGIPRSLPFYAGYDSPYLSQEQGIETLNVSQLRALYATDKLLRITQFAGKHYDAQ 372
Query 414 IYAHFGVSLSPALSDTCFRVGGSASNIDISEVV----------NNNLAGENQADIMgkgv 463
AHFG + +S + +GG + + IS + ++ + GE A V
Sbjct 373 TLAHFGKKVPQGVSGEVYYLGGQSQRLQISPITALSSGQTSDGSDTVFGEQGA--RAASV 430
Query 464 gtgqggTSFSSDEYGVLMAIYHVVPLLDYVITG--QPHELLYTNTSDLPFPEFDSIGMQS 521
GQ +F + +G+LMAIY VP +Y + + L Y+N D PE D+IGM
Sbjct 431 TQGQKPFTFEAPCHGILMAIYSAVPEANYSCDAIDRINTLAYSN--DFYKPELDNIGMSP 488
Query 522 LHFGRF-------FNYKSDKFTFDPTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAP 574
L+ F F ++ D A +G+ R+ KT D GA TL+SW
Sbjct 489 LYSYEFSVPGYTLFRNPPTPYSSDDAAQSLGWQFRYSWFKTKVDRTCGALNRTLRSWCPK 548
Query 575 LDPEYLSKWIDSTVSAGQTYYSLNYG-FFKVNPSVLDSIF 613
D YL+ + S NY + V+PS LD +F
Sbjct 549 RD--YLALGLQSRPQL------FNYASLYYVSPSYLDGLF 580
>gi|496521299|ref|WP_009229582.1| capsid protein [Prevotella sp. oral taxon 317]
gi|288330570|gb|EFC69154.1| putative capsid protein (F protein) [Prevotella sp. oral taxon
317 str. F0108]
Length=541
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 177/644 (27%), Positives = 262/644 (41%), Gaps = 129/644 (20%)
Query 13 NHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPVNTAAYTRIRE 72
N P RS FDLS++ +T+ AG LLPV + D +I+ Q F RT P+N+AA+ +R
Sbjct 15 NRP-RSAFDLSQKHLYTAPAGALLPVLSVDLMFHDHIRIQAQDFMRTMPMNSAAFISMRG 73
Query 73 YLDWYFVPLRLINKNLPQALMNMQDNPVQASGIVSNKIVTSDIPWTLLGHDSKPLGIANL 132
+++FVP + Q + +M D S +VS+ + DS P
Sbjct 74 VYEFFFVPYSQLWHPYDQFITSMND---YRSSVVSSAAGDKAL-------DSVPNVKLAD 123
Query 133 LFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSASTPGDLSFGLSKS 192
+++ + + I FG+ +L +L YG I+ S+ TP L + + +
Sbjct 124 MYKFVRERTDKDI------FGYPHSNNSCRLMDLLGYGKPIT---SSKTPVPLLYTGNVN 174
Query 193 DFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYSGGNVFNVFALGA 252
F L AYN KIY+D++R + +E + Y++N D G V
Sbjct 175 LFRLLAYN--------------KIYSDYYRNTTYEGVDVYSFNIDHKKGTFV------PT 214
Query 253 ADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDITTDSATRSYPVSLFSS 312
AD K YL L Y N P D + + P + I +DS FSS
Sbjct 215 ADE-FKKYLN------LHYRNAPLDFYTNLRP------TPLFTIGSDS---------FSS 252
Query 313 A---SGPNGINKLGAAIPDAPFNEATDTPSTYNFSI---DFGTEKWDS-SIKA-KTWvgv 364
S P G A A N A +P N S F +K S S++A KT+
Sbjct 253 VLQLSDPTGSAGFSADGNSAKLNMA--SPDVLNVSAIRSAFALDKLLSISMRAGKTY--- 307
Query 365 nnvgsgvlgvtvPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQIYAHFGVSLSP 424
Q+ A F V VS+ D Q+Y G +
Sbjct 308 -------------AEQIEAHFGV-------------TVSEGRD----GQVYYLGGFDSNV 337
Query 425 ALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMgkgvgtgqggTSFSSDEYGVLMAIY 484
+ D G +N ++SEV N LAG I GKG G+G G F + E GVLM IY
Sbjct 338 QVGDVTQTSG--TTNPNVSEVGNAKLAGY-LGKITGKGTGSGYGEIQFDAKEPGVLMCIY 394
Query 485 HVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSL--HFGRFFNYKSDKFTFDPTAS 542
VVP + Y + D PEF+++GMQ + F K + +
Sbjct 395 SVVPAMQYDCMRLDPFVAKQTRGDYFIPEFENLGMQPIVPAFVSLNRAKDNSY------- 447
Query 543 VMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYYSLNYGFF 602
G+ PR+ + KT +D +G F + E LS W + T + N
Sbjct 448 --GWQPRYSEYKTAFDINHGQF----------ANGEPLSYWSIARARGSDTLNTFNVAAL 495
Query 603 KVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNFDYDGMP 646
K+NP LDS+F V + + TD + +++ V + DGMP
Sbjct 496 KINPHWLDSVFAVNYNGTEVTDCMFGYAHFNIEKVSDMTEDGMP 539
Lambda K H a alpha
0.319 0.135 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4903549086528