bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-27_CDS_annotation_glimmer3.pl_2_3
Length=83
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094325|emb|CDL65711.1| unnamed protein product 151 4e-45
gi|488700783|ref|WP_002624781.1| Flagellar biosynthesis protein ... 35.4 0.70
gi|493196239|ref|WP_006186401.1| histidine ammonia-lyase 37.0 0.91
gi|667799870|gb|KFA89547.1| flagellar biosynthesis protein FlhB 34.3 1.8
gi|670625384|gb|KFE71782.1| Flagellar biosynthesis protein FlhB 33.9 2.7
gi|493043033|ref|WP_006107311.1| histidine ammonia-lyase 35.4 2.8
gi|505166026|ref|WP_015353128.1| hypothetical protein 34.7 2.9
gi|363751911|ref|XP_003646172.1| hypothetical protein Ecym_4292 35.0 4.0
gi|651330378|ref|WP_026454570.1| prolyl oligopeptidase 34.7 5.3
gi|491018290|ref|WP_004879996.1| hypothetical protein 33.9 5.9
>gi|575094325|emb|CDL65711.1| unnamed protein product [uncultured bacterium]
Length=107
Score = 151 bits (382), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 71/82 (87%), Positives = 79/82 (96%), Gaps = 0/82 (0%)
Query 2 RSSSDEPVVSGLSVTPSDIERLARQGIPVSVPNANSFYNIDSGLDVPPELKVDADRNTLW 61
R+ SDEPVVSGL++TPSDIE+LARQG+PVSVPNANSFY+IDSGL+VPPELKVDADRNTLW
Sbjct 26 RTISDEPVVSGLAITPSDIEKLARQGVPVSVPNANSFYSIDSGLEVPPELKVDADRNTLW 85
Query 62 ETSQASKARIMKARKRERDHLT 83
E SQ SKARIMKARKRE+DHLT
Sbjct 86 ELSQQSKARIMKARKREKDHLT 107
>gi|488700783|ref|WP_002624781.1| Flagellar biosynthesis protein FlhB [Cystobacter fuscus]
gi|528053281|gb|EPX58088.1| Flagellar biosynthesis protein FlhB [Cystobacter fuscus DSM 2262]
Length=93
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (8%)
Query 9 VVSGLSVTPSDIERLARQG-IPV--SVPNANSFYNIDSGLDVPPEL--KVDADRNTLWET 63
V GL + I +ARQ IP+ +V AN+ Y +D G +VP EL V N ++E
Sbjct 24 VAKGLRLKAEKIREIARQNNIPLMKNVALANALYRVDVGQEVPEELYDAVAEILNFVYEL 83
Query 64 SQASKA 69
+A +A
Sbjct 84 QRAGQA 89
>gi|493196239|ref|WP_006186401.1| histidine ammonia-lyase [Natrinema pallidum]
gi|445621345|gb|ELY74821.1| histidine ammonia-lyase [Natrinema pallidum DSM 3751]
Length=524
Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%), Gaps = 0/25 (0%)
Query 9 VVSGLSVTPSDIERLARQGIPVSVP 33
VV G S+TP+D+ER+AR+G VSVP
Sbjct 7 VVDGTSLTPADVERVAREGATVSVP 31
>gi|667799870|gb|KFA89547.1| flagellar biosynthesis protein FlhB [Cystobacter violaceus Cb
vi76]
Length=93
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (57%), Gaps = 3/46 (7%)
Query 9 VVSGLSVTPSDIERLARQ-GIPV--SVPNANSFYNIDSGLDVPPEL 51
V G+ + I +ARQ IPV +V AN+ Y ID G ++P EL
Sbjct 24 VAKGMRLKAEKIREIARQYNIPVMRNVSLANALYRIDVGQEIPEEL 69
>gi|670625384|gb|KFE71782.1| Flagellar biosynthesis protein FlhB [Hyalangium minutum]
gi|670631701|gb|KFE77751.1| Flagellar biosynthesis protein FlhB [Enhygromyxa salina]
Length=94
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (37%), Positives = 27/46 (59%), Gaps = 3/46 (7%)
Query 9 VVSGLSVTPSDIERLARQ-GIPV--SVPNANSFYNIDSGLDVPPEL 51
V G+ + I +A+Q IP+ ++P AN+ Y +D G +VP EL
Sbjct 24 VAKGMRLKAEKIREIAKQYNIPIMKNLPLANALYRVDVGQEVPEEL 69
>gi|493043033|ref|WP_006107311.1| histidine ammonia-lyase [Natrialba asiatica]
gi|445652676|gb|ELZ05562.1| histidine ammonia-lyase [Natrialba asiatica DSM 12278]
Length=524
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/30 (57%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 5 SDEPVV-SGLSVTPSDIERLARQGIPVSVP 33
+D+PVV G ++TP+ +ER+AR G PVSVP
Sbjct 2 TDDPVVVDGETLTPAAVERVARAGAPVSVP 31
>gi|505166026|ref|WP_015353128.1| hypothetical protein [Myxococcus stipitatus]
gi|442324538|ref|YP_007364559.1| hypothetical protein MYSTI_07603 [Myxococcus stipitatus DSM 14675]
gi|441492180|gb|AGC48875.1| hypothetical protein MYSTI_07603 [Myxococcus stipitatus DSM 14675]
Length=185
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query 5 SDEPVVSGLSVTPSDIERLARQGIPVSVPNANSFYNIDSGLDVPPELKVDADRNTLWETS 64
+DEP V VT ++++RL Q + VS NA+S + LDV + DA TLWE S
Sbjct 58 TDEPGVDA-EVTFTEVQRLLEQAVSVSRRNASSLVELGYFLDVVRGREDDA--ATLWEES 114
Query 65 QASKARIMK 73
+ ++
Sbjct 115 AGKSLKTLE 123
>gi|363751911|ref|XP_003646172.1| hypothetical protein Ecym_4292 [Eremothecium cymbalariae DBVPG#7215]
gi|356889807|gb|AET39355.1| hypothetical protein Ecym_4292 [Eremothecium cymbalariae DBVPG#7215]
Length=850
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/53 (36%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query 13 LSVTPSDIERLARQGIPV---SVPNANSFY----NIDSGLDVPPELKVDADRN 58
L +T SD+ +LA GIPV N + ++ NI+SG+++ PE K+ + N
Sbjct 453 LCITKSDLTKLANHGIPVDSFQEDNKDWYFQCVCNIESGVNIDPESKIFSGYN 505
>gi|651330378|ref|WP_026454570.1| prolyl oligopeptidase [Actinopolyspora iraqiensis]
Length=706
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/44 (39%), Positives = 26/44 (59%), Gaps = 3/44 (7%)
Query 38 FYNIDSGLDVPPELKVDADRNTLWETSQASKARIMKARKRERDH 81
++N+D+G+D PP L V + R+ + AR M AR RE+ H
Sbjct 621 YHNLDAGVDYPPTLVVTSTRD---DRVHPGHARKMVARMREQGH 661
>gi|491018290|ref|WP_004879996.1| hypothetical protein [Acinetobacter venetianus]
gi|479994803|gb|ENV37342.1| hypothetical protein F959_02150 [Acinetobacter venetianus RAG-1
= CIP 110063]
Length=185
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/60 (32%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query 11 SGLSVTPSDIERLARQGIPVSVPNANSFYNIDSGLDVPPELKVDADRNTLWETSQASKAR 70
SG+ +TP + + + RQ +PV VP + G +P A RN + +T A K R
Sbjct 46 SGVKITPYEQKEIKRQNVPVIVPEQKVQQKFNDGSQLP------AFRNLMQKTQTAFKQR 99
Lambda K H a alpha
0.311 0.127 0.353 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 432584175213