bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-7_CDS_annotation_glimmer3.pl_2_3
Length=44
Score E
Sequences producing significant alignments: (Bits) Value
gi|547226430|ref|WP_021963493.1| putative uncharacterized protein 58.9 1e-08
gi|575094354|emb|CDL65742.1| unnamed protein product 54.3 6e-07
gi|496050829|ref|WP_008775336.1| hypothetical protein 52.0 3e-06
gi|490418709|ref|WP_004291032.1| hypothetical protein 48.9 4e-05
gi|494822885|ref|WP_007558293.1| hypothetical protein 43.1 0.003
gi|565841287|ref|WP_023924568.1| hypothetical protein 41.6 0.013
gi|494610271|ref|WP_007368517.1| capsid protein 34.3 3.6
gi|517172762|ref|WP_018361580.1| hypothetical protein 33.9 4.0
>gi|547226430|ref|WP_021963493.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103382|emb|CCY83994.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=573
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 0/44 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 44
VNP +V+ IFGV AD + NTDQLL+N FD++ RN Y+GLPY
Sbjct 530 VNPHIVDNIFGVKADSTINTDQLLINSYFDIKAVRNFDYNGLPY 573
>gi|575094354|emb|CDL65742.1| unnamed protein product [uncultured bacterium]
Length=615
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/44 (57%), Positives = 33/44 (75%), Gaps = 0/44 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 44
VNPS+V+P+F VVAD + TD+ L + FDV+V RNL +GLPY
Sbjct 572 VNPSIVDPLFAVVADSTVKTDEFLCSSFFDVKVVRNLDVNGLPY 615
>gi|496050829|ref|WP_008775336.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448893|gb|EEO54684.1| putative capsid protein (F protein) [Bacteroides sp. 2_2_4]
Length=580
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (57%), Positives = 31/44 (70%), Gaps = 0/44 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 44
VNP+ V+P+F V A S +TDQ L + FDV+V RNL DGLPY
Sbjct 537 VNPNCVDPLFAVAASNSIDTDQFLCSSFFDVKVVRNLDTDGLPY 580
>gi|490418709|ref|WP_004291032.1| hypothetical protein [Bacteroides eggerthii]
gi|217986636|gb|EEC52970.1| putative capsid protein (F protein) [Bacteroides eggerthii DSM
20697]
Length=578
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (64%), Gaps = 0/44 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 44
VNP ++PIF V A NTDQ L + FD++ RNL DGLPY
Sbjct 535 VNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY 578
>gi|494822885|ref|WP_007558293.1| hypothetical protein [Bacteroides plebeius]
gi|198272099|gb|EDY96368.1| putative capsid protein (F protein) [Bacteroides plebeius DSM
17135]
Length=613
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 0/44 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY 44
V+PSV++ +F V A+ NTDQ L + FDV V R+L +GLPY
Sbjct 570 VSPSVLDNLFAVKANSDLNTDQFLCSTLFDVNVVRSLDPNGLPY 613
>gi|565841287|ref|WP_023924568.1| hypothetical protein [Prevotella nigrescens]
gi|564729907|gb|ETD29851.1| hypothetical protein HMPREF1173_00033 [Prevotella nigrescens
CC14M]
Length=656
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (69%), Gaps = 0/35 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVAR 35
V+P V+ PIF V +GS +TDQ LVN FDV+ R
Sbjct 612 VDPKVLEPIFAVKYNGSMSTDQFLVNSYFDVKAIR 646
>gi|494610271|ref|WP_007368517.1| capsid protein [Prevotella multiformis]
gi|324988543|gb|EGC20506.1| putative capsid protein (F protein) [Prevotella multiformis DSM
16608]
Length=531
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/42 (48%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGL 42
VNPS++N IF V A D LVN FDV+ R +S GL
Sbjct 490 VNPSILNTIFLVSA---VKADHFLVNSFFDVKAVRPMSVSGL 528
>gi|517172762|ref|WP_018361580.1| hypothetical protein [Prevotella nanceiensis]
Length=568
Score = 33.9 bits (76), Expect = 4.0, Method: Composition-based stats.
Identities = 14/43 (33%), Positives = 26/43 (60%), Gaps = 0/43 (0%)
Query 1 VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLP 43
+NP ++ +F V +G+ TDQ+ C F++ ++S DG+P
Sbjct 524 INPKWLDDVFAVNYNGTELTDQVFGGCYFNIVKVSDMSIDGMP 566
Lambda K H a alpha
0.321 0.141 0.452 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 433708583490