bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-24_CDS_annotation_glimmer3.pl_2_3 Length=73 Score E Sequences producing significant alignments: (Bits) Value 43151.ADAR007630-PA 32.0 5.9 > 43151.ADAR007630-PA Length=168 Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/75 (31%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query 1 MSSRRSYKAYLYQSSNMLEDNQFYLVTEIYLNARSFVEFSHKI--SKLNQILSDSHYAES 58 + S R+Y+ YL S M D Y ++ N RSF EF ++ +L+Q + D+ Y + Sbjct 12 LESGRNYR-YLRISEAMSSDKLKYCRDDVQGNVRSFKEFEQQLLGLELSQNILDTIY-RT 69 Query 59 FYSVVNLGDIYYRET 73 +++ LG++ ++ET Sbjct 70 LAAILILGEVRFKET 84 Lambda K H a alpha 0.318 0.130 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 129284145130