bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-2_CDS_annotation_glimmer3.pl_2_2

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02721                                                   392   3e-125


> 483216.BACEGG_02721
Length=578

 Score =   392 bits (1008),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 242/648 (37%), Positives = 352/648 (54%), Gaps = 88/648 (14%)

Query  1    MAHFTGLKQLQNHPHRSGFDIGAKNVFSAKCGELLPVYWDLGIPGCTYDIDIQYFTRTRP  60
            MA+   LK ++N P R+GFD+  K  F+AK GELLPV     +PG T+ I+++ FTRT+P
Sbjct  1    MANIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLKAFTRTQP  60

Query  61   VQTAAYTRIREYFDFYAVPIDLIWKSFDASVIQMGETAPVQAKDI--LTALTVSGDLPYC  118
            V TAA+ RIREY+DF+ VP DL+W   +  + QM +  P  A  I       +SG++PY 
Sbjct  61   VNTAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDN-PQHAVSIDPTRNFVLSGEMPYM  119

Query  119  SLSDLGLSCFFASGSMSVPSLKSWQANNAYANIFGYIRGDVNYKLIHMLNYGN---IIPN  175
            +   +       S + ++   KS        N FGY R   + KL+  L YGN    + +
Sbjct  120  TSEAIASYINALSTASALADYKS--------NYFGYNRSKSSVKLLEYLGYGNYESFLTD  171

Query  176  NMPALNIGNSNYRWWNREAPLASDSLIVYSQMYNFNMNVNLFPLATYQKIYQDFFRWSQW  235
            +             WN  APL +            N+N N+F L  YQKIY DF+R SQW
Sbjct  172  D-------------WN-TAPLMA------------NLNHNIFGLLAYQKIYSDFYRDSQW  205

Query  236  EKADPTSYNFDWYQGSGNLFGGTIDTSLPASSDYWKRDNLFSLRYCNWNKDLFMGVLPNS  295
            E+  P+++N D+  GS      +++     S+++++  N F LRYCNW KDLF GVLP+ 
Sbjct  206  ERVSPSTFNVDYLDGS------SMNLDNAYSTEFYQNYNFFDLRYCNWQKDLFHGVLPHQ  259

Query  296  QFGDIAVIDIEGGLNIPASRISLSSNNRPTIGIKVGAQVSSPNNCSITNSSGNLSTGDIL  355
            Q+G+ AV  I      P     L+ +N  T+G       +SP   S T ++ NL   D  
Sbjct  260  QYGETAVASI-----TPDVTGKLTLSNFSTVG-------TSPTTASGT-ATKNLPAFD--  304

Query  356  SVGIPAASYKLQSSFNVLALRQAESLQKYREITQSVDTNYRDQIKAHFGVNVPASDSHMA  415
            +VG            ++L LRQAE LQK++EITQS + +Y+DQ++ H+GV+V    S + 
Sbjct  305  TVG----------DLSILVLRQAEFLQKWKEITQSGNKDYKDQLEKHWGVSVGDGFSELC  354

Query  416  QYIGGIARNLDISEVVNNNLQGDGEAVIYGKGVGTGTGSMRYTTGSKYCILMCIYHCMPV  475
             Y+GG++ ++DI+EV+N N+ G   A I GKGVG   G + + +  +Y ++MCIYHC+P+
Sbjct  355  TYLGGVSSSIDINEVINTNITGSAAADIAGKGVGVANGEINFNSNGRYGLIMCIYHCLPL  414

Query  476  LDYDISGQHPQLLATSVDELPIPEFDNIGMEGVPLVQLVNSNLYKTNKSVKIDSILGYNP  535
            LDY      P  L  +  +  IPEFD +GM+ +PLVQL+N      N S     +LGY P
Sbjct  415  LDYTTDMLDPAFLKVNSTDYAIPEFDRVGMQSMPLVQLMNPLRSFANAS---GLVLGYVP  471

Query  536  RYYAWKSNIDRIHGAFTTTLQDWV-------------SPVDDSFLYSTFGTPSSGSFVTW  582
            RY  +K+++D+  G F  TL  WV              P D   +  +   PS    + +
Sbjct  472  RYIDYKTSVDQSVGGFKRTLNSWVISYGNISVLKQVTLPNDAPPIEPSEPVPSVAP-MNF  530

Query  583  PFFKVNPNTLDNIFAVKSDSTWESDQFLVNSYVGCKVVRPLSRDGVPY  630
             FFKVNP+ LD IFAV++     +DQFL +S+   K VR L  DG+PY
Sbjct  531  TFFKVNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY  578



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1423332636440