bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-3_CDS_annotation_glimmer3.pl_2_3

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02721                                                   409   5e-132


> 483216.BACEGG_02721
Length=578

 Score =   409 bits (1050),  Expect = 5e-132, Method: Compositional matrix adjust.
 Identities = 241/618 (39%), Positives = 342/618 (55%), Gaps = 63/618 (10%)

Query  2    SLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVN  61
            ++ SLK IRN P R+ FDLS K  F+AK+GELLP+     +PGD F +  + FTRTQPVN
Sbjct  3    NIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLKAFTRTQPVN  62

Query  62   TSAYTRIREYYDWFWVPLHLLWRHAPEVISQMQSNVQHAGS--QTSSLTLGNYLPTISSS  119
            T+A+ RIREYYD+F+VP  LLW  A  V++QM  N QHA S   T +  L   +P ++S 
Sbjct  63   TAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYMTSE  122

Query  120  QLSAVCSRLFG-------KKNYFGYDRSDLSYKLMQYLRVGNSGQVSVNFGTSLPASDTS  172
             +++  + L         K NYFGY+RS  S KL++YL  GN              +D  
Sbjct  123  AIASYINALSTASALADYKSNYFGYNRSKSSVKLLEYLGYGNYESF---------LTDDW  173

Query  173  YTQAYRFNLDLSLFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGVSSHLFSSLPVSS  232
             T     NL+ ++F  LAY+K   D++R SQW+  SP  +N+DY  G S +L ++    S
Sbjct  174  NTAPLMANLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYLDGSSMNLDNAY---S  230

Query  233  DPYWNNNTLFDLEYCNWNKDMFMGVFPDTQFGDVATIGITSDSPESSLQLKAWASGSPSS  292
              ++ N   FDL YCNW KD+F GV P  Q+G+ A   IT D     L L  +++   S 
Sbjct  231  TEFYQNYNFFDLRYCNWQKDLFHGVLPHQQYGETAVASITPDV-TGKLTLSNFSTVGTS-  288

Query  293  KAPVVVGAAASSPNFTIRAESGNMNPANILGVDTSSLSLAGSFDVLALRRGEALQRWKEI  352
              P      A+                N+   DT      G   +L LR+ E LQ+WKEI
Sbjct  289  --PTTASGTATK---------------NLPAFDT-----VGDLSILVLRQAEFLQKWKEI  326

Query  353  SLNVPQNYRAQIKAHFGVDVGENMSGMSTYVGGDSSSLDISEVVNTNLQSGDVASEAVIA  412
            + +  ++Y+ Q++ H+GV VG+  S + TY+GG SSS+DI+EV+NTN+ +G  A++  IA
Sbjct  327  TQSGNKDYKDQLEKHWGVSVGDGFSELCTYLGGVSSSIDINEVINTNI-TGSAAAD--IA  383

Query  413  GKGVGSSQGSEKFEARD-WGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIG  471
            GKGVG + G   F +   +G++MCIYH +PLLDY +   DP F    +TD  IPE D +G
Sbjct  384  GKGVGVANGEINFNSNGRYGLIMCIYHCLPLLDYTTDMLDPAFLKVNSTDYAIPEFDRVG  443

Query  472  MQSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITS  531
            MQS+P+    N  +      +++   +GY+PRY  +KTS D  +G F  T   WV    +
Sbjct  444  MQSMPLVQLMNPLRSFA---NASGLVLGYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGN  500

Query  532  V-IWKRMLIGLTS----------SSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLIN  580
            + + K++ +   +          S    N+ FFKVNP  LD IF   A    +TD FL +
Sbjct  501  ISVLKQVTLPNDAPPIEPSEPVPSVAPMNFTFFKVNPDCLDPIFAVQAGDDTNTDQFLCS  560

Query  581  CAFDVKVVRNLDYSGMPY  598
              FD+K VRNLD  G+PY
Sbjct  561  SFFDIKAVRNLDTDGLPY  578



Lambda      K        H        a         alpha
   0.318    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1338907384320