FEATURES             Location/Qualifiers
     gene            13..177
                     /locus_tag="Alpa_01"
     CDS             13..177
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="LIATFVIGVITTLFVHSCTLSLSVAKNNTNSTQKTEQTSTSSVDSTRININSKY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 17 and 18"
     gene            194..385
                     /locus_tag="Alpa_02"
     CDS             194..385
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEKQVLKKEEKTFVNGFIVSVQLPGVPPKQSFVDTSSSLAETVASILDSTPHAIILVQASVNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            390..2225
                     /locus_tag="Alpa_03"
     CDS             390..2225
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MIPKEELLTKYLFTECLRPQRIVNPYSHDVIFAPCGRCKSCIMNKSNFATAYAMNMATHFKYCYFVTLTYKDIFLPYLSVEVVRRSGNRYLFDENFETMVSTSDPRLLTPEYYHDRDLSLDPAQNEVEQVFDIGFQSIPRDVSVKSKGSFRFRSFDDEPLKFCIPMKLTELQDILIKANGRYDYGKKKVVYPSLADCKLQIPVLQSRDIELFFKRLRRNLDSHGFTSSKICYYVVSEYGPQTYRPHWHCLLFFNSEEITQTLREDISKAWAYGRIDYSLSRGAAASYVASYVNSAACLPFFYVGQKEIRPRSFHSKGFGSNKIFPKSSDVSEISKISDLFFDGVNVDSNGKVINIRPVRSCELAVFPRFSNDFFSDSDTCCKLFQSVIETPERLVSRGYLGIDTPSFGSDGFRLSDLVRAYSEYYERNFTDFSFSLRFLRGYRTRDYSDELIFREARLFDGYVFNKDMIFGRLYRLFAKVLRCFRFWNLKQYTDSWSLKAAVKKIWSYGWEYWKKKEYRFLTTYFEYLEGCNDDERLFLLVRTSGSGLATDSPHSWTYTQREDYVNCLPDDLYKRYMKTLKWLTARTEKVLKDKVKHKEFNDMQGVLLFSD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /db_xref="InterPro:IPR021723"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2238..4148
                     /locus_tag="Alpa_04"
     CDS             2238..4148
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MAHFTGLKELQNHPHKAGFDIGSKNLFTAKVGELLPVYWDFAIPSCDYDIDLAYFTRTRPVQTAAYTRIREYFDFYAVPCDLLWKSFDSAVIQMGEVAPVQAKTPLDPLTVGTDIPWCTLSDLYTSLIFMNNRVSLGQTVSVVPDYSNIFGYSRCDTSHKLLLYLNYGNFVEPSSSNVGTSTNRWFNTSFTSSAVQNYSQKYSQNVSVSLFPLLAYQKIYQDFFRWSQWENADPTAYNVDYYNGSGNLFGNGGIASSIPSSNDYWKRDNMFSLRYCNWNKDMFMGLLPNSQFGDVAVVSGVEGIDTFVPVEVFNSINETNIAKPPLTGTHTPVYTDDAMTSNTTPSRIRVAGGSGIPSSVAGSALGVRSLLGGEFSILALRQAEALQKWKEITQSVDTNYRDQIKAHFGINTPASMSHMAQYIGGIARNLDISEVVNNNLSETGSEAVIYGKGVGTGSGKMRYHTGSQYCIIMCIYHAVPLLDYAISGQDSQLLCTSVEDLPIPEFDNIGMEAVPAITLFNSNAFDNDLESDFDFLGYNPRYWPWKSKIDRVHGAFLTTLKDWVAPIDDFYLNRWFASGGSSQASISWPFFKVNPNTLDSIFAVAADSTWESDQLLINCDVSCKVVRPLSQDGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4160..4690
                     /locus_tag="Alpa_05"
     CDS             4160..4690
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MENKISNKVCFGRGFRKVDPSISAVGFNPAVREKEIAVEIDPVSKFCIETIGEGPDKYYRYRSDISMLLHAKDTANKIGIEGLRYLSESRRTKTSAIQSQLDQMDDQLLLDTVKSRHLQSPSEILAWSESLIQVAHELETRVGAEIRKKYDEEIAAAAAASTVGSSASAGSPDSAE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4656..5807
                     /locus_tag="Alpa_06"
     CDS             4656..5807
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VLLLDHLIQLNNNSFVQFGIPPLVAAGLASGAASLVGNLFGTSSSNSKNMQINKMNNEFNAREAEKARQYQTEMWNKTNEWNSPKNIRKRLQEAGYNPYLGMDSSNVGTAQSIGSSSPASAAPPIQNNPMQFDGIQNALSTAIQMDNATNVSNAEVFNLQGQKSLADANAADILSNIDWYKLTPEYRNWLQTTGMSRAQLSFNTDRQNLENMQWTNKIQRAQRTDILLSNEAKRIINKYLDSSQSLQLKLLANQSFQAFASGRLSLQQCKTEVTKQLMNMAETEGKKISNKVASETADQLIGALQWQYSSDEMFSRGYAGYAREAGKSRGKGDVAKGKLDEYNYSSRYWNTGIESIGRIGNGIGLPLMLGRGLRGPKAIKGFR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_007558289.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5901..6128
                     /locus_tag="Alpa_07"
     CDS             5901..6128
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MKKNYYQLQVYYYQKGYITIYAYSGFRSNANRKFRSYLASNFPNYQSSVFRVLTYSSIMSMLHGYPSISCASFNP"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gaaatcgtta aattgattgc cacatttgtt attggtgtta ttactacatt gtttgttcat 
       61 tcttgcacac tttctttgtc tgttgctaag aacaatacca attctactca gaaaaccgag 
      121 cagacttcta cttcttctgt agattctact cgtattaata ttaattccaa gtactaattt 
      181 aaattttatt gttatggaaa agcaagtatt gaagaaagaa gaaaaaactt ttgtgaatgg 
      241 ttttattgtt tcagttcaat tgcccggtgt tccaccgaaa cagtcatttg tagatacctc 
      301 tagttctttg gcggaaacag ttgcttctat tcttgactct acccctcatg ctatcatttt 
      361 ggttcaagct tctgtaaatc tttgatagta tgatacctaa ggaagaatta ttaacgaagt 
      421 acctttttac tgaatgtctt cgaccccaga gaattgtaaa cccttattct catgatgtta 
      481 tctttgcccc gtgtggtcgt tgtaagtcat gtattatgaa taagtcgaat tttgctacgg 
      541 cttatgctat gaatatggct actcatttta agtattgtta tttcgttact cttacatata 
      601 aagatatatt tcttccttac ttgtcggtcg aggttgttcg aaggtctggt aatcgttatc 
      661 tttttgatga aaactttgag acgatggttt ccacctccga ccctcgactt ttaactcctg 
      721 aatattatca tgatcgcgat ctttctcttg atccggctca gaatgaagtt gagcaagttt 
      781 ttgatatagg ttttcagtct attcctcgtg atgtttctgt taaatcaaaa ggatcatttc 
      841 gttttcgttc ctttgatgac gaacctctta aattctgtat acctatgaag cttaccgaac 
      901 ttcaagacat tttaattaag gctaatggtc gttatgatta tggtaagaaa aaggtagttt 
      961 atccctctct tgctgattgt aagttacaga ttcctgttct tcagtctcgc gatattgaat 
     1021 tgttttttaa acgtttaaga agaaatttag attcacatgg attcacttcc tcgaaaatat 
     1081 gttactacgt tgtatcagaa tacggacctc aaacctaccg tccgcattgg cattgtttat 
     1141 tattctttaa ctcggaggag atcacccaaa cgcttcgaga agatatatct aaggcttggg 
     1201 cctacggtcg tatcgattac tctctctccc gtggagccgc tgcttcctat gttgcgtcat 
     1261 acgttaatag tgctgcttgt ttaccattct tttatgttgg acaaaaagaa atccgtcctc 
     1321 gatccttcca ttccaaggga tttggctcga ataaaatctt tcctaaatcg tccgacgttt 
     1381 cagaaatttc aaagatatcc gatctcttct ttgatggcgt taacgtcgat tctaatggca 
     1441 aggttatcaa tatcaggcct gtacggtcgt gtgagcttgc ggtattcccc cgattctcta 
     1501 atgatttttt ctcagatagt gatacttgtt gcaagttatt tcagtctgtc attgaaacgc 
     1561 ccgaacgtct cgtttcgcgc ggctatcttg gaatagatac tcctagcttt ggttctgatg 
     1621 gttttcgatt atctgatctc gtacgtgctt attctgaata ctatgagcgg aattttaccg 
     1681 acttttcatt cagccttcgt tttcttagag gttatcgaac tcgtgattac tctgatgaat 
     1741 tgatattccg tgaagctcgt ctctttgatg gttatgtatt caataaagat atgatctttg 
     1801 gtaggttgta tcgtttattt gctaaagtcc tccgttgttt taggttctgg aatttaaaac 
     1861 aatatactga ttcttggtct ttaaaggctg ctgttaagaa gatttggtct tatggatggg 
     1921 aatattggaa aaagaaagaa tatcgtttct tgactaccta tttcgagtat cttgaaggat 
     1981 gtaatgatga cgaacgtttg tttcttcttg ttcgcacttc aggctctggt cttgctaccg 
     2041 attctcctca ttcttggact tatactcagc gtgaggatta tgtaaattgt cttcctgatg 
     2101 atctttataa gcgttatatg aaaactctta aatggttaac cgcccgtacg gagaaggttc 
     2161 tgaaggataa ggttaaacat aaggagttta atgatatgca aggtgtttta ttattttctg 
     2221 attaactaat ttgatttatg gcacatttta ctggtttaaa agaacttcaa aatcatcctc 
     2281 ataaggctgg ttttgatatt ggtagtaaaa atctttttac tgctaaagta ggtgaattgc 
     2341 ttcccgttta ttgggacttt gcaattccta gttgtgatta tgatattgat ttagcttatt 
     2401 ttactcgaac ccgtcctgtt caaacggctg cttatactcg tattcgtgag tattttgatt 
     2461 tttatgcagt tccttgtgat cttctttgga aatcatttga ttctgctgtg attcagatgg 
     2521 gcgaagttgc tcctgtccaa gctaaaactc cactcgatcc tcttactgtt ggaactgata 
     2581 ttccttggtg tactttgagt gatttataca cttctttaat ttttatgaat aatagagttt 
     2641 cgttgggtca aactgtttct gttgttccgg attattctaa tatttttggt tattctcgtt 
     2701 gtgatacttc tcataagctt ttattatacc ttaattatgg taattttgta gaaccatctt 
     2761 cttcaaatgt tggaacttct acaaatcgat ggtttaatac atcttttacg tcttctgctg 
     2821 ttcaaaatta ttctcagaag tattcccaga atgtttctgt ttcccttttt cctcttttag 
     2881 cttatcagaa aatttatcaa gatttctttc gttggtctca atgggaaaat gctgatccta 
     2941 cggcttataa tgtagattat tataacggtt ctggtaattt gtttggtaat ggtggtattg 
     3001 cttcttctat tccatcatct aatgattatt ggaaacgtga taatatgttt tctctccgtt 
     3061 attgtaactg gaataaagac atgtttatgg gtcttcttcc taattcccag ttcggtgatg 
     3121 tcgctgtagt ctcaggtgta gaaggtattg atacttttgt tcctgtcgag gtatttaatt 
     3181 ctattaatga gactaatatt gctaaacctc ctttaactgg aactcatact cctgtttata 
     3241 ctgatgatgc tatgacttcc aatacaactc cttctcgaat tcgcgttgct ggtggttctg 
     3301 gtatcccttc ttctgttgcc ggttctgctc taggtgtgcg ttctctttta ggaggtgaat 
     3361 tttctattct tgcccttcgt caggctgaag ctcttcagaa atggaaagaa attactcaat 
     3421 ctgtagatac taactatcgt gatcagatca aggctcattt tggtattaat actcctgctt 
     3481 ctatgtctca catggcacaa tatattggtg gtattgcccg taatcttgat atttccgaag 
     3541 tagttaataa taacctttct gaaactggtt ctgaagcagt tatttatggt aaaggtgtag 
     3601 gtactggttc tggtaaaatg cgttatcata ctggttctca gtattgtatt ataatgtgta 
     3661 tttaccatgc tgtacctctt ttggattacg ctattagtgg tcaggattct caacttcttt 
     3721 gtacttctgt agaggatctt cctattcctg aatttgataa tattggaatg gaagctgtac 
     3781 ctgctatcac tttgtttaat tcgaatgcat ttgacaatga tcttgaatct gattttgact 
     3841 ttctaggtta caaccctcgt tattggccgt ggaaatctaa aattgatcgt gttcatggtg 
     3901 catttcttac tacccttaag gattgggttg ctcctattga tgatttttat ttgaataggt 
     3961 ggtttgcttc aggtggtagt tcacaagctt ctatttcttg gccgttcttc aaggtaaatc 
     4021 ctaatacttt ggattctatt tttgctgttg ctgctgattc tacttgggaa agtgatcagc 
     4081 ttttaattaa ttgtgatgtt tcatgtaagg ttgttcgtcc tctttctcag gatggtatgc 
     4141 cttattaata ttatttatta tggaaaataa aatttcaaat aaagtttgtt ttggtcgtgg 
     4201 tttccgtaag gtagatcctt ctatttctgc tgttggtttt aatcccgctg ttcgcgaaaa 
     4261 ggaaatagct gttgaaattg atccggtttc taagttttgt attgaaacta ttggcgaagg 
     4321 tcctgataaa tattaccgtt atcgttccga tatttctatg ttgcttcatg ctaaggatac 
     4381 tgctaataag attggtattg aaggattgcg ttatctttct gaatctcgta ggactaagac 
     4441 gtctgctatt caatctcagt tagatcaaat ggatgatcag cttcttttgg atactgttaa 
     4501 gtctcgtcat ttacagtctc cttctgagat ccttgcttgg tctgaaagtt taatccaggt 
     4561 agctcatgaa cttgaaactc gtgttggtgc cgaaattcgt aaaaaatatg atgaggaaat 
     4621 tgctgccgct gccgccgctt ctactgttgg tagtagtgct tctgctggat cacctgattc 
     4681 agctgaataa taattcattt gttcagtttg gcattcctcc tttagttgct gctggtcttg 
     4741 cttccggtgc tgcttcactg gttggcaatc tttttggtac ttcttcttct aattcgaaga 
     4801 atatgcagat caataagatg aataatgagt ttaatgctag agaagcagaa aaggctcgtc 
     4861 aatatcagac tgaaatgtgg aataagacta atgagtggaa ttctcctaag aatattcgta 
     4921 agcgtcttca agaagctggc tataatcctt atttaggaat ggattcttct aatgttggaa 
     4981 ctgctcaaag tatcggatca tcttctccgg cttctgctgc tcctcctatt cagaataatc 
     5041 ccatgcaatt tgatggtatt cagaatgctt tgtctacggc tattcagatg gataatgcta 
     5101 ctaatgtttc taatgccgag gtttttaatc ttcaaggaca aaagtctttg gctgatgcta 
     5161 atgctgctga tatcctctct aatattgatt ggtataagtt aactcctgag tatcggaatt 
     5221 ggttacaaac tactggtatg tctcgtgctc aattgtcttt caatactgat cggcaaaatc 
     5281 ttgagaatat gcaatggacc aataaaattc aacgtgctca gcgcactgat attcttttat 
     5341 ctaatgaggc taaacgtatt attaataagt atttggattc ttctcaatcc ttgcaattga 
     5401 agttgttggc taatcagtct tttcaggctt ttgcttctgg acgtttgtct cttcagcaat 
     5461 gtaagactga agttactaaa caacttatga atatggctga aactgaaggt aagaagattt 
     5521 ctaataaggt tgcttctgaa actgctgatc aattgattgg tgctcttcaa tggcaatatt 
     5581 cctctgatga gatgttctcc cgtggttatg ctggttatgc tcgtgaagct ggtaaatctc 
     5641 gtggaaaagg agatgttgcc aaaggtaaac ttgatgagta taattatagt tctcgttatt 
     5701 ggaatactgg cattgagtct attggtcgta ttggtaatgg tattggatta cctttaatgc 
     5761 ttggtcgtgg tcttcgtggt cctaaggcta tcaaaggatt ccgttaatta tcgttaaata 
     5821 cattgttaaa tagtcatagt gattaggtta tcttaatcat tatgactatc tttgtattgt 
     5881 aatcaaaaac caatattgtt atgaaaaaga attattatca acttcaggtt tattattatc 
     5941 agaaaggtta tattacaatt tatgcttatt ctggttttcg ttctaatgct aatcgtaaat 
     6001 ttcgttcgta tttagcttct aattttccta attatcaatc ttctgttttt agagttttga 
     6061 cttatagttc tattatgtcc atgcttcacg gttatccctc tattagttgt gcttctttta 
     6121 atccttaaca tagcgcgagt gattattttg tactctttat tgctccgcgt ggacgtttct 
     6181 ataatcgttc agattataga gatttcccac cggagctttt ttatttatta ttaattgttc 
     6241 gcttttacta tttttatttc tgctcattat aatattcaga tacatttttt tatcgttaac 
     6301 tccttttcgg gacgtctctc caactttgtt ggattttcca cctccccttt attgccgata 
     6361 gcagtgaaac tgcgtgtaca gcgcgagcga caaaaaaagg gttctagggc tttgccctag 
     6421 agcgttagca ccttgatatc gccaaaggcg cattcgcttt agcgaacact tctgtcccta 
     6481 atctcttttt taaggttgct gtctctccta atcatactga ctatcccccc ctgtataatt 
     6541 taaaaaattc tcttggcgaa gcctatttca tttttcccga agggtaatta ctttatctta 
     6601 gtaattactc tctatccttg tcatatatac gaaaaatgac acacccccta atacattgct 
     6661 ttattcataa taatagttaa taaatttgct aatcacgatt attttttatt agttttgtca 
     6721 tgtctaaaaa aactaactta ttgaaaatta 
//
