FEATURES             Location/Qualifiers
     gene            29..178
                     /locus_tag="Alpa_01"
     CDS             29..178
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MRTKYIIELGEKKTKEVEIYVIEGTFAEAYKAAKLFMEKNYYIKSIKEA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            180..374
                     /locus_tag="Alpa_02"
     CDS             180..374
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKRFTIYWETPKGDEITTIEEAENLKKALRQVSYFEKKTGYEIVSIEIIKNGKEEETKILLDKQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            421..588
                     /locus_tag="Alpa_03"
     CDS             421..588
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKKGESTRVDMVNEDGEIEKIYLVERTDRRVIIKTVKDYKKEQIENENKKQLSLW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            582..785
                     /locus_tag="Alpa_04"
     CDS             582..785
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MVTKTKKEIWILILKIVAAIAAAILGVLGVQSCTMSMSIAKNNNNATQQTEQKATSEVKNDSINLKF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            790..1083
                     /locus_tag="Alpa_05"
     CDS             790..1083
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MTEREHRVKDLFQIIRTTTHEEQEEYVIVIGKHLATEARFSTREEAEQFIESKDYDLIWALIAALIDAKDVQEMEAQQEKDVQKVENVIQKQTIKDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1086..2984
                     /locus_tag="Alpa_06"
     CDS             1086..2984
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAITKAIGKNTVGDGNKMTVRLNNYYRSTHDLSYVWKNTQAVGPVVPFLCEYAQIDDTHEIDLSAMVITHPTVGPLYGSFKLQLDVYVAPIRLYQKLLHNNTMGIGLDMTKVKLPVIQVDGMSTDDNPTNSNQWTQINPSALLAYLGLRGWGKIKASDISIKKNGVPLLAYWDIWKNYYANKQEPNGKVLSTYHIISKGSINGTSVDNWEKFRILKVGKNNIQISKWDNQNQELKVYEGIVHMYNNGESKRGTVRELLGEGNFDSASSFYTWSIEQKNFEGSISIMYGDSLNIIDFPITKIDEVREKILAFPSTSPYIVPNEKPYSYSERDKDGMLRTKQPMYGLAVKTYQSDIFNNWIQTEWLEGENGINAITAVDTSIGSFTMDTLNLAKKVYNMLNRIAVSDGTYKSWMETVFSAKYVERTETPIYYGGMSQEIIFEEVVSTSATGEEPLGTLAGKGRLAPNKKGGKVVIKIDEPSYIIGICSITPRLDYSQGNNFTMNWETMNDLHKPALDMIGYQDLTMEKAAWWTEEHTSDTEFAQKSIGKTVAWVDYMTNYNKNYGNFASGENENFMTLDRNYNVENPDFTTYIDPAKYNGIFADQSRSSMNFWVQIGVNWKVRRKISAKSIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:AGT39863.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3032..3331
                     /locus_tag="Alpa_07"
     CDS             3032..3331
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MKGVEIKEGETIETKVRRITEEKTPITDSAPIVYTNRTDGVIAGYNIRTDRFEIALSAMDKVNKAKIATRNAKNKVEESDTNKEIESNTDTQAGETSVA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3483..4592
                     /locus_tag="Alpa_08"
     CDS             3483..4592
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MAGMALAAGTAGATFAQTAGQAFASSLPQMAMSAGGGLFGSISAQKQQKRAHAYNLEYMDKQFQQNKEAAAINQAYAKELWDYTSFENQRKHMEAANLNPALMYGMGGATGGSASGAGTVGGGGSLPGTNPVSAGAQAGGMSIQGAMMFSEIAKNFAQASKDEADAKKKEGVETDEARARINLINKQTEVEEEVKQLTAANYFKVLKEQDEVWQRARLLSTQADIAEKTKQAEIESVYVKNWLNTATGLEKLAQIEMHEAEAKQILEETRWIAFDMQTRRITAEAAKKRVGVMVQELEKKYKFQNQENIREWLFGSIDALAKGANSVSNFLPMGRVIKVGEKILDQAFDNKGKSKGWREITKEFTNAIE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="similar to AA sequence:MV_prot:putative.gpH"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4594..5547
                     /locus_tag="Alpa_09"
     CDS             4594..5547
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MCLYPKLIRNPKYKPTKTNGGNPPVCYDTRLLYIPAACGECYECRKKKQREYQIRLQEEIRHTHGEFLTLTIDNDWYKKLEKEIPKLPKDTIKETKINGEYDNLIATVALRKFLERCRKETGKSIKHWCITELGEENGRIHIHGIFFGENINQVIQKNWKYGFIYIGQYVNERTVMYITKYMFKQCEYNKLFKGKVLSSSGIGSGYVSRFDSSRNKYKEDGNTNETYQFRNGVKVNLPNYYRNKIYSEEEKEKLWIEKLEKGYIWVMGEKVNARNPEEFSKCLEYYQARAIKLGGAKKEDWEKSKYIRRLIRENRRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgtaggaaac aaaataaaaa tcaaagttat gagaacaaaa tacattatcg aattaggaga 
       61 aaaaaaaaca aaagaagtag aaatctatgt aatagaagga acatttgcag aagcttataa 
      121 agccgcaaaa ttattcatgg aaaaaaatta ttatattaaa tcaataaagg aagcataaaa 
      181 tgaaaagatt tactatttat tgggaaactc caaaaggaga cgagattaca acaatcgaag 
      241 aagcagaaaa tctgaaaaaa gcattaaggc aagtaagcta ctttgagaaa aaaacaggtt 
      301 atgaaattgt aagtatagaa ataattaaaa atggaaagga ggaagaaaca aaaattttat 
      361 tggataaaca ataaagaatt caaaacatat gggagaatga aagagtacac attcttccat 
      421 atgaagaaag gagaatcaac acgggttgat atggtaaacg aggacggtga gatagaaaaa 
      481 atctatctag tcgaacgaac tgatagacgt gtaattataa agacggttaa agattacaaa 
      541 aaagaacaaa tagaaaacga aaacaaaaaa caactgagtt tatggtaaca aaaacaaaaa 
      601 aagagatttg gattttaata ttgaagattg ttgcggcaat cgccgctgca atcttaggag 
      661 tattaggagt acaatcgtgc acaatgagca tgagtattgc gaaaaataac aacaacgcta 
      721 cgcagcaaac agaacaaaaa gctactagcg aagtaaaaaa tgatagtatt aacttaaaat 
      781 tttgaaatta tgacagaaag agaacacaga gttaaagatt tgtttcaaat tatcagaaca 
      841 acaactcacg aagagcaaga agaatacgta attgtaatcg gaaaacatct agcaacagag 
      901 gcgagattct caacaagaga agaagcagaa caattcattg aatcaaaaga ttatgatttg 
      961 atttgggcat taattgctgc attgattgat gcaaaagacg ttcaagaaat ggaagcacaa 
     1021 caggaaaaag acgtacaaaa agtagagaat gtaatacaaa aacaaaccat taaagactta 
     1081 taattatggc aataacaaaa gcaatcggaa agaataccgt aggagacggt aacaaaatga 
     1141 ctgtaaggtt aaacaactat tacagaagta cacacgattt atcatacgtt tggaaaaata 
     1201 cgcaggcggt cggtcctgtc gtgccattcc tgtgcgaata tgcacagatt gacgatacgc 
     1261 atgaaattga tttatcggca atggtaatta cacatccaac agtaggacca ttatacggga 
     1321 gcttcaaatt acaattagat gtatatgtag caccaatcag gctataccaa aagttattac 
     1381 ataataacac aatggggatt ggtctggata tgacaaaggt aaaattacct gtaatacaag 
     1441 tagatggaat gtcgacagat gataacccga caaattcaaa ccaatggact caaataaatc 
     1501 caagtgcact actagcatat ctagggctaa gaggatgggg taaaattaaa gcgtcagaca 
     1561 taagcataaa aaagaacgga gtaccactac tagcatattg ggatatatgg aaaaactact 
     1621 atgcaaacaa acaagagcca aacgggaaag ttctaagcac atatcatata atatcaaaag 
     1681 gaagtataaa tggtacttct gtagataatt gggagaaatt caggatttta aaagtaggga 
     1741 aaaacaacat acaaataagc aaatgggata atcaaaacca agaattaaaa gtatacgaag 
     1801 gtattgtaca tatgtacaat aacggcgaat caaaaagagg aacagtaaga gaactactgg 
     1861 gagaaggaaa tttcgacagt gcaagcagct tttatacatg gagtatcgaa caaaaaaatt 
     1921 ttgagggtag tatatcaata atgtacgggg atagtctgaa cataatagat tttccaataa 
     1981 caaaaataga cgaagtaaga gaaaaaatat tagcattccc ttcaacatcg ccatatatag 
     2041 taccaaatga aaaaccatac tcgtattcag aaagagacaa agacggaatg ctaagaacaa 
     2101 aacaaccaat gtacggacta gcggtaaaaa cataccaaag cgacatcttt aacaattgga 
     2161 ttcaaaccga atggctagaa ggagaaaacg gaataaatgc aattacagca gtagatacga 
     2221 gtataggtag tttcacaatg gataccctaa acctagcaaa aaaggtttac aacatgttaa 
     2281 atagaatcgc ggtatcagac ggaacatata aaagttggat ggaaacagta ttctcagcga 
     2341 aatatgtaga aagaaccgaa actcctatat actacggagg tatgtctcaa gaaatcattt 
     2401 ttgaagaagt agtaagtaca tccgcaacag gggaagaacc attaggaaca ctagccggaa 
     2461 aaggaagatt agcaccaaat aaaaaaggag gaaaagtagt aataaaaata gacgaacctt 
     2521 catacatcat cggaatatgc tccattacac caagactcga ctacagtcaa gggaataatt 
     2581 ttacaatgaa ttgggaaaca atgaatgact tgcacaaacc tgcattagat atgattggtt 
     2641 accaagattt aacaatggag aaagcagcgt ggtggacaga ggaacacacg tcagataccg 
     2701 aatttgccca aaaatcaata ggaaaaacag tagcatgggt tgactacatg acaaactaca 
     2761 acaaaaatta tggaaatttc gctagtggag aaaatgaaaa ctttatgaca ctagacagaa 
     2821 attacaatgt agaaaatcct gactttacaa cctatataga cccagcaaaa tacaacggaa 
     2881 tatttgccga ccaaagtaga agctctatga acttttgggt acaaatcggt gtaaattgga 
     2941 aagtaagaag aaaaataagc gcaaaatcaa ttcctaacct ataaaaaaat aaattatgaa 
     3001 atatccaaaa tatcacacac cattttcaaa tatgaaaggt gtagaaataa aagaaggtga 
     3061 aacaatcgaa acaaaagtaa gacgtattac agaagagaaa actccaataa cagactcagc 
     3121 tccaatcgtc tatacaaata gaacggacgg agtaatagca ggatataata ttcgaaccga 
     3181 taggtttgaa atagccctat cagcaatgga taaagtaaac aaagcaaaaa tagcaacaag 
     3241 aaacgcaaaa aacaaagtag aggaatccga tacaaataaa gaaattgaat cgaataccga 
     3301 tacgcaagca ggagaaacaa gtgttgcgta aggcatagga agccgtcact acattaaaga 
     3361 tgaaccgacc gaagggatgt aaaaaaaaag tcccttcggt acgcatgtag tattatatat 
     3421 ctagtatatt gtagaactct tttaaaaaag agcgaaaatt gtaaacttaa attattaaaa 
     3481 ttatggcagg aatggcacta gcagcaggaa cagcaggagc aacatttgct caaacagctg 
     3541 gacaagcatt cgcaagctca ttgccacaaa tggcaatgtc ggcaggtgga gggttattcg 
     3601 gaagtatctc agcacaaaag caacaaaaaa gagcacatgc ttataatctc gaatacatgg 
     3661 ataaacagtt ccagcaaaac aaagaagccg cagcaatcaa tcaagcttat gcaaaagaac 
     3721 tctgggacta tacaagtttc gaaaatcaac gtaaacacat ggaagcagca aatctgaatc 
     3781 cggcactaat gtacggaatg ggaggagcaa caggcggaag tgcatccggt gctggaacag 
     3841 taggcggagg aggaagttta ccaggaacaa atcctgtaag tgcaggagcg caagcgggtg 
     3901 gaatgtcaat acaaggagcg atgatgttta gcgaaattgc gaaaaacttt gcacaagcaa 
     3961 gcaaagacga agcagatgca aagaagaaag agggcgtaga aacagacgaa gcacgtgcaa 
     4021 gaatcaactt gataaacaaa caaacagaag tagaagaaga agtaaagcaa ttaacagcgg 
     4081 caaactactt caaggtactc aaagaacaag acgaagtttg gcaaagagca agactcctct 
     4141 caacacaagc ggatatagca gaaaaaacaa aacaagccga aatagaaagc gtatacgtaa 
     4201 aaaattggct caatacagca acaggactcg aaaaacttgc acaaatagaa atgcatgaag 
     4261 cagaagcaaa acaaatccta gaggaaacaa gatggatagc gtttgatatg caaacaagaa 
     4321 gaataacagc agaagcagca aaaaaaaggg taggagtaat ggtgcaagaa ctagagaaaa 
     4381 aatacaaatt ccaaaatcaa gaaaatataa gagaatggct atttggaagt attgatgctc 
     4441 tagcaaaagg agcaaacagt gtatccaact tcttaccaat gggaagagta attaaagttg 
     4501 gagaaaaaat tctagaccaa gccttcgaca ataaaggaaa atcgaaagga tggagagaaa 
     4561 tcacaaaaga attcactaat gcaatagaat aatatgtgtt tatatccaaa attaataaga 
     4621 aatccaaaat acaaaccaac aaagacaaac gggggaaatc cccccgtttg ttatgataca 
     4681 agacttctat atatcccggc agcatgcgga gaatgttacg aatgcagaaa aaagaaacaa 
     4741 agagaatatc aaataagatt acaagaggaa ataagacata cgcacggaga atttttaaca 
     4801 ttaacaatag ataatgactg gtataagaaa ctagaaaaag aaataccaaa attaccaaag 
     4861 gacacaatca aagaaacaaa aataaatgga gagtatgaca atttaatagc tacagttgca 
     4921 ttaagaaaat ttctagaaag atgcagaaaa gaaacaggaa aatctataaa acattggtgt 
     4981 ataacagagt taggagaaga aaacggaaga atacatatac acgggatatt cttcggggaa 
     5041 aacataaatc aagtaataca aaaaaattgg aaatatggat ttatatacat aggacaatac 
     5101 gtaaacgaaa gaactgtaat gtatattaca aaatacatgt tcaaacaatg tgaatacaat 
     5161 aaattattca aagggaaagt gctttcaagt agcggtattg ggtcggggta cgtttcccgt 
     5221 ttcgattcct cgcgcaataa atacaaagaa gatggaaata caaatgaaac ttaccaattc 
     5281 agaaacgggg taaaagtcaa ccttccaaat tattacagga ataaaattta ttcagaagaa 
     5341 gaaaaagaga agttatggat agaaaaacta gagaaaggct atatttgggt aatgggggaa 
     5401 aaagtaaacg caagaaatcc agaagaattt agtaaatgtt tagaatatta tcaagcgcga 
     5461 gccataaagc tgggtggagc aaaaaaagaa gattgggaaa aatcaaaata tatcagaaga 
     5521 ctgataaggg aaaataggag gcgttaaaac gccaaccctt cggcattgga cgccgtgcgg 
     5581 aatgcgctat gcagcgtgta ccgtgcggcg tgctttttgt cacctacggc gaccgaaaac 
     5641 cctaagggtt ttccatcctt tccttcttcg gtgtataacg ggaatcgact ctcctgtttg 
     5701 tccgaaggct agctaccttc tcgaagcggt ttgtagtctg gagtgcaccc gccagacaag 
     5761 ctggcgtggt gtgcgcctcc ggcgatacta aggtgctagt cgctacgggc gtttccacgc 
     5821 cctgtgcccg aggagcgctc aaacgtcgcg caggcttacc attcggcatt ggacaccatg 
     5881 cggaatgcgc tatgcagaat acgccatgcg gcgtggtaat tatgtgacac actccgagaa 
     5941 ttacggagtg aaagagaaaa ggatagaaaa aaaaatgaag aaataattta cacaaattgg 
     6001 taaattagtc acataaaatt ctcttaagat taagaatttt aagaaaaaaa gagaaggaaa 
     6061 aatttgcaga taaaaataaa atgcttatct ttgtcatgtg aaaaaaaaac aagaaaaata 
     6121 agaaaaaaat ttacaaacaa a 
//
