FEATURES             Location/Qualifiers
     gene            complement(337..576)
                     /locus_tag="Alpa_01"
     CDS             complement(337..576)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MTNLKEAFIVRPLPESEEFIITIGNHLATAEKFKSRKAAEMRINKTDWNLVSALFFALKEADKWAEKNPELVKQNKEEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(580..810)
                     /locus_tag="Alpa_02"
     CDS             complement(580..810)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEHLKTKKMKITGNQWIEIVRAISTMIIAIITTLCTQACTMSLSVSKNNSNSTQKTEQTSTSSVDSTHININPKNY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(862..1122)
                     /locus_tag="Alpa_03"
     CDS             complement(862..1122)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKKRQIKTIWIVNSNKFNTFKAFKRWLWYNLHTGEIIEGSQIWEDTIYKTYKIKKTERRLIVETTYDLEQEQKKYFENLQLKLFDK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1082..1300)
                     /locus_tag="Alpa_04"
     CDS             complement(1082..1300)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MAATKFTAIYVNNDGKLIEKEIPGMNTYKIAEKFAIMLNDTEETKVVCVIESWKLYPNENEKKTNKNNLDSK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1847..2845)
                     /locus_tag="Alpa_05"
     CDS             complement(1847..2845)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MCLYPKLIRNKKYLPTKKNNYNPPKMVDPRTAYITAACGKCLECRKQKQREWLVRMSEELRTEPNAYFMTLTISDENYEILKNTCKSEDKNTIATKAIRLTLERIRKKTGKSIKHWFITELGHEKTERLHLHGIVWGIGTDQLIKEKWNYGITYTGNFVNEKTINYITKYMTKIDEDHPEFVGKVLCSKGIGAGYIKRADASKHKYEKGKTIETYRLRNGAKINLPIYYRNKLFTEEERELLFIDKIEKGFIYVLGTKVHRDDEEYYIQLLEEGRKKEAILYGEHNQDWEQQKYINRLRKQKKKQEQELNQLEIYWALERAKDYTQLETCPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2845..3909)
                     /locus_tag="Alpa_06"
     CDS             complement(2845..3909)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MALGGFFGAFANILGGLATSSIQRSDNEYLMNRQAELNKEQADYSTDLAKNYWDYTNFENSVKHLKEAGLNPALYYAKGGQGGSTGGGQAQGVGLPSTTPTMARIQAQGMGAQLQNVLSQVELNKATAKKTEAEAEKIAGADTKVAEREAEMLASQSEFNRRITRLQDSIEKLTNAQEQKTAAEYFYIQAQEKKVWEEVREQIVKSDIAEETKEAMIKKTGLENFNLMQAGIESITRQKLNSEQINYLKGQLAIGWANVAIGEKSVSNEADRIANDLMMGMKDLDRKDRELIKDWIYEGIHAGKEISGEILNWLMRGTPKTITEITSRLEEMFDAKGNETGSKMVKQTITKGAK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 18 and 19 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 18 and 19"
     gene            complement(4055..4375)
                     /locus_tag="Alpa_07"
     CDS             complement(4055..4375)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MYKKTIIPGYTGRMKSVECFEGEQIEEKVRRIVNNNEPITDGAPIIFTEKKDGVRPEYNVRTDRWDIALDAMNKIDMARKAHKENEVKPEDFGNVPDKQNGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4380..6002)
                     /locus_tag="Alpa_08"
     CDS             complement(4380..6002)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MSDIKLPQLSISINKTKDNPTPDNQWSQINPSCLLAYLGIRGYAYNTTTTSQEVTVQKMAVPLLGYFDIFKNYYANTQEENFYIIGATETITNIKVTQAEGAIHTSTTPDKINIGIASGDSVEITPKNTYEADELIITWFDMSTETTRTGKPTEFGTWSKTSGNWNVVMAPTQVGLLMSITPKNRVQLQDYPLEEIDEMRDKILSTKGNITSIPNNSNIALYDSFGKRLPNGKLNTTSSQYGLCLKTYNSDLLQNWINTEWIDGVNGISEVTAIDVTDGKLTMDALNLQQKVYNMLNRIAVSGGTYRDWLETVFTGGNYMERCETPIFEGGMSTEIVFQEVISNSASGEQPLGTLAGRGYDTGKQKGGHVKIKVTEPSFIMGIGSITPRIDYSQGNEFYNEFLTLDDIHKPALDGIGYQDSLNWQRAWWDDNRMEKNGRLQPSAGKTVAWLNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAETNLDAMNFWVQTKFDIKVRRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gtctgacata tttagaccga tttttgttcg gttgttgtgc agccaactgt tgtaaagtct 
       61 gataggtata ctgaatatgt gattttcgtg tttgaagctt ccgaatagtg gtcctactgt 
      121 tggatgtgtc agtacatggc tttctatgtc gatatctatt gtatcacctt tttgagctag 
      181 tagtacaagg tttggaacta gtgttcctgc gctttgagtg tttctgaata ttgtactcaa 
      241 gtcgtgagta ctcatgttat aggtgtgtag gttgactgac attttattgt tgtcacctat 
      301 ggtgttttta ccaatgtttt tttgtaatga catagtttat tcctcctctt tattttgttt 
      361 gactaattct ggattttttt cagcccattt gtccgcttct ttgagtgcga agaatagtgc 
      421 acttactaga ttccagtctg ttttattgat tcgcatttct gcagcttttc ttgatttgaa 
      481 tttttctgcg gttgccaagt ggtttccgat tgtaataatg aattcttcac tttctggtag 
      541 tggtcttact atgaatgcct cttttagatt tgtcataatt taatagtttt taggattaat 
      601 attaatgtga gtactgtcaa cgcttgacgt tgatgtttgt tcggtttttt gcgttgagtt 
      661 tgagttattt ttactcacgc ttaaactcat tgtacacgct tgtgtacata gtgttgtaat 
      721 gattgcaata atcattgtgg aaattgctct tacaatttct atccattggt tacctgtgat 
      781 tttcattttt ttagttttta aatgttccat aaaatatcat tcctatgctt ataagcaata 
      841 gtaatgttaa tattcctagt atcatttgtc aaatagtttt aattgtaaat tttcgaagta 
      901 ttttttttgt tcttgttcta aatcgtaagt agtttctact attagcctcc tttctgtttt 
      961 tttaattttg taagttttgt aaattgtatc ttcccaaatt tgagagcctt ctattatttc 
     1021 tcctgtgtgg agattgtacc atagccatct tttgaacgct ttaaatgtat tgaatttatt 
     1081 gctatttact atccaaattg tttttatttg tctttttttc attttcgtta ggatataatt 
     1141 tccatgattc gattacacat actacttttg tttcttctgt gtcatttagc attatagcga 
     1201 atttttctgc tattttgtac gtgttcatac ccggtatttc tttttcgatt aatttaccgt 
     1261 cattgtttac ataaattgct gtgaattttg ttgctgccat agcttttaaa ttttaaattg 
     1321 ttatacttat gttttttatt acattgcaaa tatacttgtt ttttctgatt tcttcaaatt 
     1381 ttctggtatt tgtctgaagc ttttaacctt tattagtaat agtatcttta agcctccgtg 
     1441 gcgtttgaac ggtgatggag caatagaggg cgcatagccc tccttagcga ctagcacctt 
     1501 gatatcgacg aagtcgcaca ccacgaccat aggtcgggtg cacgtcactc ccttatcttg 
     1561 gtcttaaggt agctgtctcc cggattaagg catatctcac cctcccgcta tacactcttg 
     1621 gccacccggc ccgaggtgtt aaataaaact tatgtttgat tattcagatt tctgcctttt 
     1681 gctgtggttc tcgtccgcta ggtcgctgta aggctggaag cctttcagcg taagcgtaga 
     1741 cggcgtcccg tgccgtccag cgccgccgtt gcgttagcag gcgttaaaat cggagcgaag 
     1801 cgacttccta gagaaaatta cccctttggc ggctggttag cagtcatcag aacggacatg 
     1861 tttctagttg tgtgtagtct ttagctcttt ctagtgccca atatatttct agttgattga 
     1921 gttcttgttc ttgttttttc ttttgtttcc gtagtctgtt gatatatttt tgttgttccc 
     1981 agtcttgatt atgttcacca tagagtatag cttctttttt tcttccctct tcgagaagtt 
     2041 gtatataata ttcttcatcg tctctatgaa cttttgttcc tagtacgtaa atgaatccct 
     2101 tttctatttt gtcgataaag agtagttctc tttcttcttc tgtgaatagt ttatttctgt 
     2161 aatatattgg taaatttatt tttgctccgt ttcgtagcct gtaagtttct atggtttttc 
     2221 ctttttcgta tttgtgtttg cttgcgtcag ctctttttat gtatcctgct cctatgcctt 
     2281 tagagcatag tacttttcca acgaattctg gatgatcttc atctattttt gtcatgtatt 
     2341 tggttatgta atttattgtt ttttcgttta caaagttccc ggtataagtt attccgtagt 
     2401 tccatttttc ctttatcagt tggtctgtac ctattcccca aactatcccg tgcaaatgta 
     2461 atctttctgt tttctcgtgt cctagttctg taataaacca atgctttata gattttccag 
     2521 ttttttttcg gatacgttct aatgtaagac gtatcgcttt tgttgctatt gtgttcttgt 
     2581 cctctgattt gcatgtattt tttagtattt cgtagttttc atcggaaatg gttagtgtca 
     2641 tgaagtaggc atttggttct gttcttagtt cctcgctcat tctcactagc cattcccttt 
     2701 gcttttgttt ccgacactct aagcattttc cgcatgctgc ggttatatat gccgttctag 
     2761 gatctaccat ttttggcgga ttatagttat tcttttttgt tggcaaatat tttttatttc 
     2821 ttatgagttt cggatataga cacattattt cgctcctttc gtaatagttt gttttaccat 
     2881 ttttgaacct gtttcatttc ctttagcatc aaacatttct tctagtcggc ttgttatttc 
     2941 tgtgattgtt tttggtgtac ctctcattag ccaattgaga atttctccgg atatttcttt 
     3001 tcctgcgtgt ataccttcgt atatccaatc tttgataagt tcgcggtctt ttcggtctag 
     3061 gtctttcatt cccatcatta aatcatttgc gattctgtcg gcttcgtttg atactgattt 
     3121 ttcacctatt gccacgttag cccatccgat tgctagttgc cctttaaggt agtttatttg 
     3181 ctcgctgttg agtttttgcc ttgtgattga ttctatacct gcttgcatca gattgaagtt 
     3241 ttctagccct gtttttttaa tcatggcttc ttttgtttct tctgctatgt cagattttac 
     3301 aatttgttcg cgtacttctt cccaaacttt cttttcttgt gcttgaatat agaagtattc 
     3361 cgctgccgtt ttttgttctt gtgcgttggt tagcttttct atgctgtctt gtagtctggt 
     3421 gattcgtctg ttgaactcgc tttgtgatgc tagcatttcg gcttcacgtt ctgctacttt 
     3481 tgtgtcagct cctgcaattt tttcggcttc tgcctctgtt ttttttgctg ttgccttgtt 
     3541 gagttctact tgtgataata cgttttgtaa ttgtgctccc attccttggg cttgtattct 
     3601 tgccattgtt ggtgtcgtag atggtagtcc tactccttgg gcttgtcctc ctccagttga 
     3661 tcctccttgt cctccttttg catagtataa tgcaggattt aatccggctt cttttaagtg 
     3721 ttttacactg ttttcgaagt ttgtgtagtc ccagtaattt tttgctaggt ctgttgaata 
     3781 gtcggcttgc tctttgttga gctccgcttg tctattcatt agatattcgt tatctgatct 
     3841 ttgtatgctt gatgttgcaa gtccgcctaa tatgttggcg aatgctccaa aaaatcctcc 
     3901 tagtgccata ataatttata tttacatgtt ttcgagcttt ttctaaaagc tcttttctat 
     3961 atacttgata tattatagta gatgcgtacc gtcgttcaat ttattagggg aattttttac 
     4021 aattcccctc tagacgtgca gctactgact cgcatcagtt ttcactgggc gacccgtttt 
     4081 gtttatcagg aacgtttccg aaatcttctg gttttacttc gttttcttta tgtgcctttc 
     4141 ttgccatgtc tatcttattc atagcatcta gtgctatgtc ccatctgtcc gtacgtacgt 
     4201 tgtattcagg gcgtacaccg tctttttttt ctgtaaagat gattggtgct ccatctgtga 
     4261 ttggttcgtt gttgttaacg attcttctta ctttttcttc gatttgttca ccctcgaagc 
     4321 attctacgct tttcatgcgt ccggtatatc ctggtataat tgttttttta tacataatgt 
     4381 tataaatttg gaatttgttt tgcactgatt aaacgtctca ctttaatgtc aaactttgtt 
     4441 tgtacccaga agttcatagc atctagattt gtctctgcaa aaatgtagtt gtattttact 
     4501 gggtctatgt atgttgttaa gtcggctatt ttggtctcgt ttgttcctgc tgatgggctc 
     4561 atctcatagt ttctattgag aaccataaat gcctcgttat cgttgattgc aaagtttccg 
     4621 aacgttctgt tgatatttgt catgtagtta agccaagcga ccgtttttcc tgctgatggt 
     4681 tgtaatctac cgttcttttc catgcggtta tcatcccacc atgctctttg ccagtttagt 
     4741 gaatcttggt atccgattcc gtctagtgct ggtttgtgaa tatcgtccag tgttaggaat 
     4801 tcgttgtaaa attcattacc ttgtgagtaa tcgattcttg gagttattga accaatgccc 
     4861 ataatgaaag atggttctgt tactttgatt tttacgtgac ctcctttttg tttacctgtg 
     4921 tcatatcctc tacctgctag tgttcctagt ggttgctctc cgcttgcgct gttgcttatg 
     4981 acttcttgga atacgatttc agttgacata ccaccctcga atatgggtgt ttcacatctt 
     5041 tccatgtagt tgcctcctgt aaatacggtt tctaaccagt ctctgtatgt accgccgctt 
     5101 acagcgattc tgtttagcat gttgtaaact ttttgttgta aatttaaggc atccattgta 
     5161 agtttgccgt ctgttacatc tattgctgtc acttcgctaa ttccgtttac tccgtctatc 
     5221 cattcggtat tgatccagtt ttgaagaagg tcactattat atgtttttag gcatagtccg 
     5281 tattgtgaac tggttgtatt tagttttccg tttggtagtc ttttaccgaa tgaatcatat 
     5341 agagctatat tactattatt tggtatgctt gtgatatttc cttttgttga taatatttta 
     5401 tcacgcattt cgtcaatctc ttctagagga taatcttgta attgtacacg gttttttggt 
     5461 gtgattgaca ttagtagccc tacttgtgtt ggtgccatta ctacgttcca atttccggaa 
     5521 gttttagacc atgttccgaa ttcagttggt ttacctgtcc tagttgtttc tgttgacata 
     5581 tcaaaccacg ttataataag ttcgtctgct tcgtatgtat tttttggagt tatttcaacg 
     5641 ctgtctccgc ttgcaattcc tatatttatt ttatctggtg ttgttgaggt gtgtatagct 
     5701 ccttctgctt gtgttacttt tatatttgta attgtttcgg ttgctccaat aatatagaaa 
     5761 ttttcttctt gtgtattggc atagtaattt ttgaagatgt caaagtatcc aagtaatggc 
     5821 acagccattt tttgaactgt tacttcttgg cttgttgttg ttgtattata tgcatatcct 
     5881 cgtatcccta agtatgctag tagacaactt gggtttattt gtgaccattg attatctggt 
     5941 gttggattat cttttgtttt attgatactt attgataatt gtggtaattt gatgtctgac 
     6001 atattttaga ccgatttttt g 
//
