FEATURES             Location/Qualifiers
     gene            141..407
                     /locus_tag="Alpa_01"
     CDS             141..407
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MEREFNDMKDVFRVLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEAINSINWNLVTAMIYACKEADEYEKKLKRSAKKIDNNTKKEG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            411..2327
                     /locus_tag="Alpa_02"
     CDS             411..2327
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MAIIKNIGKNTIGDNNKMSVNLHEYKMSTHDLSTIVRNTQSPGTLVPNLCLVGQKGDTIDIDIDASVLTHPTTGPLFGSFKLEHHIYTAPVRLYNSWLHNNRTKIGLNMAQVKLPQITVALNKAYDNVYKEYEKEFQWTQVNPSCLLAYLGIRGFANLQGVNTKTATKNAVPILTYYDIFKNFYANTQEDNFYIIGGIPELAAEYNGNIVDTKNINIKLKSNDIFTFENLISQNELIIYGSENSHYREWKATDIGTWKSNTELLIDRISSNSVYIVSKMAQQGATALQQIPLENLDTIRDKILLTPGDTVFDIGSKISSVAPFNTLTERFNNNKLKTSAPQFGLCLKTYNSDLYQNWINTEWIEGVDGINEASAVDVTDGTLSMDALNLSQKVYNFLNRIAVSGGSYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQEVISNSATENEPLGTLAGRGVTTGRQKGGHIRIKITEPCYIMCICSITPRIDYGQGNTWDTYLETMDDWHKPALDGIGYQDSLNGERAWWTDYLTADPDLKRTSAGKTVAWINYMTNVNRTFGNFAPGMSESFMVLNRNYSMNNSASPQIEDLTTYIDPVKFNYIFADANIDAMNFWVQTKFEIKARRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2341..2658
                     /locus_tag="Alpa_03"
     CDS             2341..2658
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKYSFPTKNNDRLKSVEIYEGESIETKCARILQNKEPITDTAPIIYTAKEDGVLPAYNIRTDRFDIAMDAYDKITRSSAKKEIAPKPEDFGNVPNKTEGGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2821..3858
                     /locus_tag="Alpa_04"
     CDS             2821..3858
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MLGTIIGIGGAIGGAIAKNSAQSSQYQENLALMKYQAKLNQKQAYYSTGLAKDLWDYTNYENSMKHIKAAGLSPGLIYGQGGAGGTTSGAGQASGVGMPSKTGTEAGLQAQGMALQLANMASQVRLNESQADKNEADANKTRGIDTKLQEATIDNLIAQTSNEKVKKGLILGQIRVADAEEELKRNMADWTKDKADETRWNIKSLQKGIDKLTEEINGMKLDNELKERTIDNKVKESSLTLQNLMAEILLKGSQQKVNEEQAKAIPQQILQGWEDLTKKGKALIIQREQMEAYVQDVFNRYDLGKRGLDIEEQKLIKDIVLGMLEIASKGAGAALGAKVGKTGLQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3951..4892
                     /locus_tag="Alpa_05"
     CDS             3951..4892
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="LRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWKYGITFTGYFVNEKTIKYITKYMLKVDEKHPKFRGKVLCSAGIGAGYLKREDAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTEEEREKLFLDKIEKGIIYILGIKIDLKTEELRYNGVLASERERCERLYHDNPKEWDKRKYLNRVKKQRQWIESKATMVAEKEKRKEERSEKRLNNDIDLFANLYFNSN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5465..5677
                     /locus_tag="Alpa_06"
     CDS             5465..5677
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAATKFSVVKENKNTSELLIINYAGEWTYKTALAIAKEANREFNEEGWRIVCVVETKKLYPNENEKTKKD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5757..5909
                     /locus_tag="Alpa_07"
     CDS             5757..5909
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MKKICYELEEDVITKKYIFTKQERRLICEKTYDKDNEDLEKWNQKQLKLF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgaccttatg tgtacaaatc gtgtacaatg agtatgagta tagcaaaaaa caacaacaat 
       61 gcaacgcaac agacggaaca aacaacaacg tcaagcgttg atagtacaaa aattaatatt 
      121 aatcctaaaa actattaaaa atggaaagag aatttaacga catgaaagat gtattcagag 
      181 tattaccaac aactcaagaa gaaaaagaat acatgattgt aattggcaaa catttggcaa 
      241 caactgaaaa gtttccaaca cgtgaagcag cagaagaagc aatcaattct ataaattgga 
      301 atctagttac agcaatgata tatgcatgta aagaagcaga cgaatacgaa aagaaactca 
      361 aacgttctgc aaaaaagatt gacaacaaca ctaaaaagga gggctaaatt atggcaataa 
      421 taaaaaatat tggtaaaaat accataggtg acaataataa aatgtcggta aatctgcatg 
      481 agtataaaat gtctacacac gacttatcaa caattgtaag aaacacacag agcccgggaa 
      541 cattagtacc gaatctatgt ttagtagggc aaaaaggaga tacaattgat attgacatcg 
      601 acgcaagtgt actaacacat ccaacaacag gaccgttatt cgggtcattc aaattagaac 
      661 accatatcta tacagcacca gtacgtttgt acaacagttg gttacacaac aaccgtacaa 
      721 aaatcggtct gaatatggca caggtaaaat tacctcaaat aaccgtagcg ttaaacaaag 
      781 catacgataa cgtatataaa gaatacgaaa aggaattcca atggacgcaa gtaaatccaa 
      841 gttgtctact agcatactta ggaatcagag gttttgcaaa cttacaaggt gtaaacacaa 
      901 aaacagcaac aaaaaacgcc gtaccaattc ttacatacta tgacatattt aaaaatttct 
      961 acgccaatac acaagaagat aatttttata tcattggagg tataccagaa ctagccgcag 
     1021 aatacaacgg taatatcgta gatacaaaaa atataaatat aaaattaaaa agtaatgaca 
     1081 tattcacatt tgaaaatcta atatcacaaa atgaactaat aatctatgga agcgaaaaca 
     1141 gccactacag agaatggaaa gcaacagaca tagggacatg gaagtccaat acagaattat 
     1201 taatagacag aataagctcc aattcagtct atatagtctc aaaaatggca caacagggtg 
     1261 caacagcatt acaacaaata ccattagaaa acctggatac aatcagagac aaaatactat 
     1321 taacaccagg agatacagta tttgatatcg gaagcaaaat aagcagcgta gcacctttta 
     1381 acacattaac agaaagattc aacaacaata aattaaaaac aagcgcgcca caattcggac 
     1441 tatgtttaaa aacatacaat agtgacttat atcaaaattg gattaataca gaatggatag 
     1501 aaggagtaga cggaatcaat gaagcaagcg ctgtagacgt aacagacggt acactatcga 
     1561 tggacgcctt aaacctatca caaaaagtat acaacttcct aaacagaatc gcagtaagtg 
     1621 gtgggtcata tcgagactgg ctagaaactg tatacacagg aggcaattac atggaaagat 
     1681 gcgaaacacc aatgttcgaa ggaggtgtaa gccaggaaat cgtattccaa gaagtaataa 
     1741 gcaacagcgc gacagaaaat gaaccactag gaacactagc cggacgaggt gtaacaacag 
     1801 gacgtcaaaa aggcggacat atccgtatca aaataacaga accatgttat attatgtgta 
     1861 tctgttcaat cactccacga atcgactacg gacagggaaa cacctgggat acatacctag 
     1921 aaacgatgga cgattggcac aagccagcac tagacggaat cgggtaccaa gattcattaa 
     1981 acggcgaacg tgcatggtgg acggactacc ttacagcaga cccagattta aaacgtacat 
     2041 ccgcaggtaa aacggtagct tggatcaact acatgacaaa tgtcaacaga acattcggaa 
     2101 actttgcgcc tgggatgagt gaatccttta tggtattgaa tagaaattat tcaatgaaca 
     2161 attcagcatc accacaaatc gaggacttaa caacatacat agacccagta aaattcaatt 
     2221 acatattcgc agacgcgaat atagatgcta tgaacttctg ggtacaaaca aaatttgaaa 
     2281 ttaaagcgag acgtctaatc agtgcaaaac aaattcctaa cttataaaaa tgataacatt 
     2341 atgaaatatt catttccaac aaaaaataac gatagattaa aatcagttga aatctacgag 
     2401 ggtgaaagca ttgaaacaaa atgcgcaaga atcctacaga acaaggagcc aatcacagat 
     2461 acggcaccta tcatctatac agcaaaagaa gatggtgtac tacctgcata taatatccga 
     2521 acggacagat tcgatatagc aatggacgct tatgacaaaa ttacaagaag ttcagcaaag 
     2581 aaagagatag ctccaaaacc ggaagatttc ggaaatgtac caaataagac agaaggaggc 
     2641 tcacctagtg aaaactaaac tgtttaaaga ggtatcttta aagccttgta ggtaacaggc 
     2701 acttcggagt atttgtaaag acaaaatact ttaaaataca cgaaagtacg cacctacaat 
     2761 ctattatcaa gtaatatgaa tatcgctttg aaacatcaaa gcgcgaaaat gtaaataatt 
     2821 atgcttggaa caattatcgg tataggtggt gcaattggag gtgcaattgc taagaacagc 
     2881 gcccaaagta gtcaatacca agaaaattta gctttaatga aataccaggc taaattgaat 
     2941 caaaaacagg cttattacag cacaggatta gcaaaggatt tatgggatta caccaactac 
     3001 gaaaattcaa tgaaacatat aaaagctgca ggtcttagtc ctgggcttat atatggacaa 
     3061 ggcggagcag gcggaacaac tagcggagca ggtcaagcaa gcggagtagg aatgccaagt 
     3121 aaaacaggaa cagaagcagg actacaagcg caaggaatgg cactacagtt agcaaatatg 
     3181 gcaagtcaag taaggctaaa tgaaagccaa gcagataaaa atgaagccga tgccaacaaa 
     3241 acaagaggta tagatactaa attacaagaa gctacaattg ataacctaat agcccagact 
     3301 tcaaatgaaa aagtaaaaaa agggctcata ttgggacaaa tcagagtggc tgacgccgaa 
     3361 gaggaactta aacgaaacat ggccgattgg acaaaagaca aagccgatga aacacgctgg 
     3421 aatatcaaaa gcctacaaaa aggaattgat aaactaaccg aagaaatcaa cggaatgaaa 
     3481 ctcgacaacg agctaaaaga aaggacaatt gacaacaaag tgaaagaatc ctctctaaca 
     3541 ctccaaaatc tgatggctga aatactactc aagggaagtc agcaaaaagt caacgaagag 
     3601 caagcaaagg ctattcctca acaaattcta caaggatggg aagaccttac caagaaaggt 
     3661 aaggcactaa tcatccaaag agaacagatg gaagcctatg tacaagatgt attcaataga 
     3721 tatgacctgg gcaaaagagg tctggatatt gaagaacaaa aactcatcaa agacattgta 
     3781 cttggaatgc tagaaatagc ttcgaaagga gccggagcag cactaggggc aaaagtaggc 
     3841 aaaacaggtc ttcaataact atgtgtctat atcctaaact cataccaaac aagcggtacc 
     3901 taccaacaaa gaaaaatggc gggataccgc ctgtttgtcc tgacgaaagg ttgcgttatg 
     3961 taacagcagc atgtggggac tgttatgaat gcaggaaaca aaagcaaaga caatggatgg 
     4021 taagaatgtc agaagaaaac agacaaacac caaacgccta ctttctgaca ctgacaatcg 
     4081 atgataaatc ctacaagcaa atcaaacaaa aatacaactt aaaagataat aacgacattg 
     4141 caacaaaagc cataaggtta tgtctagaaa gagtacgaaa attaaccgga aaatccgtaa 
     4201 aacattggtt tattacagaa ctaggacacg agaaaacaga aagattacat ctacatggga 
     4261 tagtatgggg cttgggaaat ggagagaaag taacaaacaa ctggaaatac ggaatcacat 
     4321 ttaccggata tttcgtgaat gaaaaaacta tcaaatacat tacaaaatac atgctaaagg 
     4381 tagacgaaaa acatccaaaa ttcagaggga aagtattatg ctctgccgga ataggagcag 
     4441 gatacctcaa acgagaagat gctaaaagac atgtatatat cccaggcaaa acaaacgaat 
     4501 cgtaccggat gagaaacggc gaaaaactca atctacctat ctattataga aacaaaatat 
     4561 tcacagaaga agaacgtgaa aaactattcc tagacaaaat agaaaaagga ataatctata 
     4621 tactaggaat caaaatagac ctcaaaacag aagaattaag atacaacggc gtactcgcaa 
     4681 gcgaacgaga acgttgcgaa agactatatc acgataatcc gaaagaatgg gataaaagaa 
     4741 aatatctcaa cagggttaaa aagcaaagac aatggataga atctaaagcg actatggtcg 
     4801 ccgagaagga aaaaagaaaa gaagaaagaa gtgaaaaacg attaaataac gacattgatt 
     4861 tattcgccaa tctatatttc aactcaaatt aaaagctgcg ctatggcatg tccaacgggg 
     4921 ctccgtgtta acatcacacg ggtctgtatt taccacctca aggccggggg gcccagggtg 
     4981 tataacggga gggtgagata cacctttatc cgagagacag cgaccttaag accaggataa 
     5041 ggcgtgacgg gcacccgacc tacggtcgtg gtgtgcggct ccgccgatac tatggtgcta 
     5101 gtcgctaagg agaggctcgg cgcctctctg ttgctctaat cctcgttcaa acgccacgaa 
     5161 ggcttaaaga tactattgcc aataatagtt aaatacttca aataaatatc tgaaaatctg 
     5221 caaaaatcaa aaaaatcaat tatatttgca atgttaataa gaaaggaggt gaaaaatgaa 
     5281 aacttagagt ttcttttata acaaagaaaa aaaggaattt attagatttt gtaaaacaaa 
     5341 aaaagaaaat catgaatacg gaacttataa aactattagt ttacaaagat tactttatag 
     5401 acttttatta tcttgattac gagacattta taaataaaat taaagaactt aaagacaaat 
     5461 aattatggca gcaacaaaat tttcagtagt aaaagagaac aaaaatacaa gtgaattact 
     5521 cattatcaac tatgcgggcg aatggactta caaaacagca ctcgcaatcg caaaagaagc 
     5581 aaaccgagaa tttaacgagg aaggatggag aatcgtatgc gtagttgaga caaaaaaatt 
     5641 atatcccaac gaaaatgaaa aaaccaaaaa agattagaaa atatgaaaca gacggatata 
     5701 ttttcaatac atttcaggag ttaaaaaatt atgtgtactt tcacacatca ataaaaatga 
     5761 agaaaatatg ttatgaacta gaagaagatg ttattacaaa aaaatacatc ttcacaaaac 
     5821 aagaaaggag gttaatatgt gaaaaaactt atgacaaaga caatgaagat ttagaaaaat 
     5881 ggaatcaaaa acaacttaaa ttattttaaa catgcctaga gaagtattcg gaatagtaat 
     5941 attactatta ataatcgcct tcataggcgg aagttattta tacattaaaa atggagactt 
     6001 atgaaaa 
//
