FEATURES             Location/Qualifiers
     gene            complement(125..376)
                     /locus_tag="Alpa_01"
     CDS             complement(125..376)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="METKDFELMDEKLLAIVDFGKEKKFYIVNSSDLQCFLQHHSSKFLSTPPPVIFQSVLVYDPIVFQSQLDSFRKSISKSNSLNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(781..2013)
                     /locus_tag="Alpa_02"
     CDS             complement(781..2013)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MDPTVLGAIISAGAGLGSSVASGIASGKMNKKSIKYNKWALQEQQRFQSEQAQLGRDWSEEMMSKANQWNLEQWNRENEYNLPVNRKARLLAAQINPALAMQGGSSVGQAASSPSSASAPSPASPSGASALPLNLQRPDYGTGFAQLSSAVNSYFENKQRDVITEGYGLDNALKATYGDRAYRLSLGKTEAEIDNIRASTAKSYADSALVNLQAKEKEILNKYLDAGQQLSLFLKIGELATMKTQRELLSAQTRKAIAEEIEVSARARGLKISNYIAEQTAERLIIATNEENRYRGIHARSSAAWTPVRDFYKTSQMSADLKASEVANIMAEFERYTKDTPGNRWIQKNIVPVSSALGPLLDAAAMFTVAGKLGKSVNIFKPKYGKTSKYSWKEYKYGENPKTPKYSWKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 21 and 22 "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2016..2444)
                     /locus_tag="Alpa_03"
     CDS             complement(2016..2444)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MEKRDIINVLSNSEFTTVRPIDELRFVEELDGSIRFVSDATLLLNEQRIINDIGEDNYRNFIRQLQVNPSSPYKDAKFTDEQLMTEIKSRYVQSPSEVREWVRDMLDKQEQISDEVKAKLEEMKASESESSESIETVESKSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2462..4252)
                     /locus_tag="Alpa_04"
     CDS             complement(2462..4252)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MGSRLFSYGDVKGRPSRAGFDLSKKFCFTAKAGELLPVYWKMLLPGTKVNLKDMHFTRTMPVNTAAYTRIKEYFDWYFVPLRLINKNLNPALVNMLDQSNIANSLIQNKVVSDEIPCFDYDTLTSCLKAFNTQHPSYLDIAGFERVPKTLKLLRYLRYGNFLYDTGFSTLPSKNMNYSSVKDFNLYAKWNLNVNVLPLAAYQKIYCDYFRFEQWEKAQPYTYNFDYYSGGNILTEYKGDPSDLFLKDNLFSLRYANYPKDLFMGILPSSQLGSVATINISHSSSAGVHLTNQEGYLTGTVASDGTTITVKNTRSLTPGISPVLRTNFADLNANFDILSFRIANAIQRMREIQQCAGQGYKEQLEARWNVKLSTALSDHCTYIGGNSSQINISEVLNNSLDTEQSQADIKGKGVGSGSGSESFETQEHGILMCIYHAVPVLDYQLTGPDLQLLNTYATDLPQPELDNLGLEALPYFTFVNDAVATQPNNVTVKSIIGYVPRYIAYKTDIDCVDGAFLTSLTSWVTPLTIDEIVTKISLGSGTGPFTPNYGLFKVSPYVLDSIFVSQCDSTVDTDQFLVESFFDVKLVQNLDYNGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4286..4504)
                     /locus_tag="Alpa_05"
     CDS             complement(4286..4504)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="LDDLANPDFIGDSMVLMMRDRFRVSSVSQCDEYCRRLEKYLNSLSIYRYKVTQYPRDKSHEFISEQVLLPFD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4524..5993)
                     /locus_tag="Alpa_06"
     CDS             complement(4524..5993)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VPKCQIFKVHPDDPDSTLYELVVKPRRRGDYKMVQKVYSKKYKKVIKKEVDAPLSYTDDFSYYFNASEEYIRDFREQATLNVNGKYPHLQDYYGYISRKDGQLFVKRLRKHIFKFAGKYEKVHIYLVSEYGPVHFRPHFHILLFTDSDRVAKNIGRIVNSSWKFGRCDWSASRGDAESYVAGYVNSFSRLPYHLKQDDRVKPYSRFSNGFATSCFFDAKEAVRDSISRPIEETPLSPFLNGVPSLINGKLLAIRPPRSVVDSCFLRYACNGRLSSHELYWLVRSVSTTLSRSFQTVRRDNPDATLMDVCRLHLRSIYSMSSRSVEDFLSIENQLYTCYYYARLESPTTDVRSDDLFDSDCMRLYRLFSCVGKFISFWDITPSSSYEYIYRTVDLSKWYYSRLSYHMLRSQYTDLVGLVDLDEELVDFLIAPVTEDTPSSNGVSALEHHPPFESLVKSHPILSLAQAKAKTDCDNRVKHREINERNLKYV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bctoNOG24068"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tgggtaccaa accttatcca tactactgcc ctgctagaat tgttcctaac gaagttaaca 
       61 aagaaacgat cgcagaaatg attgcggacc aaattttgtt ctttttgtca gttgtagcca 
      121 taaatcaatt atttaaagaa ttagacttag aaatagattt ccgaaaagaa tctaattgag 
      181 attgaaaaac aataggatca taaactaaaa cagattgaaa aataaccgga ggaggagtag 
      241 acaaaaattt actagaatga tgttgcaaaa aacattgaag atcagaagaa ttaacaatat 
      301 aaaatttctt ctccttacca aaatcaacga tagcaagtaa tttttcatcc attaactcaa 
      361 aatcttttgt ttccatagta ccaactttta aaattaatat ttcattgcaa gtatagtaaa 
      421 aaaaaagata tgttacaacg gtgtcacttg tgggtaatta tgacaagaga aaacctttgc 
      481 agggtgataa cctgcaaatc cttcggacac aagtatttag atttcatagt taaagtaact 
      541 taaataattt aaacgctgcc ttccagttcc ctgcaactcc caaagggaga ttggagggaa 
      601 ataggaaggt caggcagcta aatggtgact cgagtgctcg ccgcagggca ggaggatgag 
      661 gaaatccgag acctggaatt ctatatttga atgaacagga cgtaaaaaga aaagagttac 
      721 attactgcaa ctctttcgga atatccaata catcaattcc aacaacagaa ttaaaatatg 
      781 ttactctttc caagaatact tcggagtttt cggattttca ccgtacttat actctttcca 
      841 agaatacttc gaagttttac cgtacttagg cttaaaaata ttaacagact taccaagctt 
      901 accagcgaca gtaaacatag cagcagcatc aagcaaagga ccaagggcag aagacacggg 
      961 aacgatattc ttttgaatcc aacgattacc aggagtatcc ttcgtgtaac gctcgaattc 
     1021 agccatgata ttcgcaacct cagaggcttt aagatcggca gacatttgac tagtcttata 
     1081 aaagtctcga acaggagtcc aagcagcaga cgaacgagcg tgaatgccac ggtaacgatt 
     1141 ttcctcgtta gtagcaataa tcaaacgctc agcagtctgt tcagcaatat aattagaaat 
     1201 cttaagacca cgagcacgag cagaaacctc aatttcctca gcaatagcct tacgagtctg 
     1261 agcagacaac aattcacgct gagttttcat cgtagcaagt tcaccaatct tgagaaataa 
     1321 agaaagttgc tggccagcat ccagatattt attcaaaatc tctttctctt tagcctgcaa 
     1381 attaaccaaa gcagaatcag cataagactt agcagtagaa gcacgaatat tatcaatttc 
     1441 agcctcagtc ttgccaaggc ttaaccgata agcacgatca ccatacgtag cctttaaagc 
     1501 attatcaagg ccataacctt cagtaataac atcacgctgt ttattctcaa aataagaatt 
     1561 cacagcagac gaaagttgag caaaaccagt accataatct ggacgttgta agttcaaagg 
     1621 aagagctgac gcaccagacg gggacgcagg agaaggagca gaagccgaag acggagaaga 
     1681 ggcagcctgt ccaacagaag agccaccttg catagcaaga gccgggttga tctgggctgc 
     1741 tagaagacgt gcttttcgat tcacgggaag attgtattca ttctcacgat tccattgctc 
     1801 caaattccac tgattcgcct tagacatcat ctcttcagac caatcacgac caagttgagc 
     1861 ttgttcagat tgaaatcttt gctgttcctg taaagcccat ttattatact tgatactctt 
     1921 tttattcatc ttgccagaag caatgccaga agcaactgaa cttccaagac cggctccagc 
     1981 agagataata gcacctaaga ctgtaggatc catgattatt cagatttaga ttcaacagtt 
     2041 tcaatagatt cagaagattc ggattcagaa gccttcattt cttctaattt agccttaact 
     2101 tcatcagaaa tttgttcctg cttatcaagc atatcacgaa cccattcacg aacttcagaa 
     2161 ggagattgaa cataacgaga tttaatctcg gtcatcaatt gctcgtcggt aaatttagca 
     2221 tccttataag gagaagaagg attaacctgt aattgacgaa tgaaattacg ataattatcc 
     2281 tcaccaatat catttataat acgctgctca tttaaaagca acgtggcatc agaaacaaaa 
     2341 cgaatagaac cgtcaagttc ttcaacaaaa cgcaattcat caataggacg aacagtagtg 
     2401 aattcagagt tcgaaagaac atttataata tctctttttt ccataacaaa caaattttag 
     2461 attaatacgg cataccatta taatcaagat tctgaacaag cttcacatca aagaaagatt 
     2521 caacgaggaa ctgatccgta tcaacagtac tatcacactg agaaacaaaa atagaatcta 
     2581 aaacataagg tgaaacttta aaaagaccat aattaggagt aaaaggacca gtaccagaac 
     2641 caagagaaat cttggtaaca atctcatcaa tagtcaaagg agtaacccaa gacgttaaag 
     2701 aagtcaagaa agcaccatct acacaatcaa tatccgtctt ataagctata taacgaggaa 
     2761 cataacctat aatagatttc acagtaacat tattaggctg agtagcaaca gcatcattca 
     2821 caaaagtaaa atacggaaga gcttccaatc caagattatc taactcgggt tgaggaaggt 
     2881 cagtagcata agtgttcaaa agctgaagat caggaccagt taattgataa tccaaaacag 
     2941 gaaccgcatg ataaatgcac atcaaaatac catgctcttg agtttcaaaa gattcagaac 
     3001 cagaaccaga accaacacct ttacctttaa tatcggcttg cgattgctcg gtatccaaac 
     3061 tattatttaa aacctcggaa atattaatct gggaagaatt accaccaata taggtacagt 
     3121 gatcagacaa agccgtagaa agctttacat tccaacgagc ctcgagctgc tctttatatc 
     3181 cttggcctgc acattgttgg atttcacgca tgcgctgaat agcattagca atgcggaaag 
     3241 aaagaatatc aaaattagca ttcaaatctg caaaattagt cctaagtaca ggactaattc 
     3301 ccggagtaag agaccgagta tttttaacag taatagtagt gccgtcacta gcaacggttc 
     3361 cagttaaata accctcctgg ttagtcaaat gaacaccagc actagaagaa tgactaatat 
     3421 taatagtagc aaccgatcct aattgagaag acggtaaaat acccataaaa agatctttcg 
     3481 ggtaattagc ataacgaaga gaaaacaaat tatctttcaa aaacaaatca gaaggatcgc 
     3541 ctttatattc agtcaaaata ttaccaccag aataataatc aaaattatac gtatatggtt 
     3601 gagccttctc ccattgctca aaacggaaat agtcacaata aattttctgg taagcagcta 
     3661 aaggaagaac attcacattc aaattccact tggcataaag attaaaatct ttaacagaag 
     3721 aataattcat attcttgcta ggaagagtag aaaaaccagt atcatataaa aaattaccgt 
     3781 aacgaagata acgtaataac ttcaaagtct taggaacacg ctcaaagcca gcgatatcaa 
     3841 gatacgacgg atgctgagta ttaaaagctt tcaaacaaga agtcaaagta tcataatcaa 
     3901 aacaaggaat ctcatcagaa acaactttat tttgaatcaa agaattagca atgttagatt 
     3961 gatccaacat atttaccaaa gcaggattca aattcttatt gatcagacga agaggaacga 
     4021 aataccagtc aaaatactcc ttgatacgag tgtaagcagc ggtattaacc ggcatggtac 
     4081 gagtaaagtg catatccttc aaatttactt tcgtaccagg aagcaacatt ttccaataaa 
     4141 caggcaacaa ttcacctgcc ttggcagtaa aacaaaactt tttagaaagg tcaaaaccgg 
     4201 cacgagacgg cctacctttc acatctccat aagaaaaaag tcgtgaaccc ataaattaaa 
     4261 atttaagtta aaatttaagt ttaaactaat caaaaggtaa caacacctgc tcagaaataa 
     4321 actcgtgaga tttatctcga ggatactgcg ttaccttata tctataaata cttagagagt 
     4381 ttaaatattt ttccaaacga cgacaatact cgtcacattg ggaaacagaa gagacacgga 
     4441 aacgatcacg catcatcaaa accatgctat ctccaataaa atcgggattc gcaagatcat 
     4501 ccaatcgata tatataaata gttctacaca tatttcaaat ttcgttcatt aatttcacga 
     4561 tgcttaacac gattgtcaca atccgtcttg gccttagctt gggctaaaga caaaatagga 
     4621 tgagacttga caagagattc aaaaggcgga tgatgttcta aagcagagac accattcgaa 
     4681 gaaggagtat cttcagtaac cggggcaatc aaaaaatcaa ctaactcttc atcaagatca 
     4741 actaaaccca cgaggtcagt gtactgagaa cgtaacatat gataagaaag ccgagaataa 
     4801 taccacttag aaagatcaac cgtcctataa atgtattcat aagacgacga aggagtaata 
     4861 tcccagaacg aaataaattt accaacacac gaaaaaagac gatataaccg catacaatca 
     4921 ctatcgaata aatcatccga gcgaacatcg gtcgttgggg attcgagtcg agcataataa 
     4981 taacaagtat aaagttgatt ctcaatactt aaaaaatctt ccacagaacg agaagacata 
     5041 gaatagatag atcgaagatg aagcctacaa acatccatca aggttgcatc gggattgtct 
     5101 cttcggactg tttgaaaaga tctggataac gtcgtagata cgcttcgtac aagccaatat 
     5161 aattcatggc tagacaatcg accattgcac gcatatcgga gaaagcagga atcgacaacc 
     5221 gacctgggag ggcggattgc gagaagtttt ccattaatga ggctagggac tccattaagg 
     5281 aatggagaga gcggggtctc ttcgatcggt cgggaaatac tatctctaac ggcttccttg 
     5341 gcgtcaaaaa agcatgatgt tgcaaatccg ttcgagaaac gagaatacgg tttaactcta 
     5401 tcatcctgtt taaggtgata gggaaggcga ctaaatgagt taacatagcc cgcaacgtac 
     5461 gattcagcgt cgcctctcga ggcagaccaa tcacaacgac caaatttcca gctcgaatta 
     5521 acaattcggc caatattctt ggcgaccctg tccgagtccg tgaataataa gatatggaaa 
     5581 tgcggacgga agtgtacggg tccgtattct gatacaaggt agatatgtac tttttcatat 
     5641 tttccagcaa atttaaatat atgcttacgc aaacgtttaa caaataattg gccgtcctta 
     5701 cgagaaatat aaccgtaata atcttgtaaa tgaggatact ttccgttaac attcaaagtg 
     5761 gcctgctcac gaaaatcacg gatatattct tcagaagcat taaaataata agaaaaatca 
     5821 tcagtataag aaagaggagc atctacttcc tttttaatga cctttttata tttcttagaa 
     5881 tacacctttt gaaccatctt ataatctcct cgacgtctag gtttgacaac aagctcgtaa 
     5941 agagttgaat caggatcatc aggatgaacc ttaaaaattt gacacttcgg cacatatttt 
     6001 tg 
//
