FEATURES             Location/Qualifiers
     gene            complement(126..1001)
                     /locus_tag="Alpa_01"
     CDS             complement(126..1001)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MECRQQKQRQWLVRMSEELRQTPNAYFMTLTISDENYEILKNICKSEDPNTIATKAIRLMLERIRKKTGKSIKHWFITELGHEKTERLHLHGIVWGIGIDKLIEEKWNYGITFTGYFVNEQTINYITKYMTKEDLDHPGFIGKVLCSKGIGMGYAKREDAKNHVYKKGKTIEYYRLRNGSKINLPIYYRNQLFTEEEREMLFLDKIEKGIIYVMGQKVHRDNEEEYIALLEEGRRAEQRLYGNHVQEWEKEKYLNRLRKQKKKQERELEQLELYWAFEKAKTYTQIESCPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1126..2181)
                     /locus_tag="Alpa_02"
     CDS             complement(1126..2181)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MLGGIIAAATSAIGSQIKGIEARDAEDRAFAKQKELMDKQYELNNKMAEQNQQRAKYMWDYTNFENQKQHLLNANLSPGLFYGGTGAGGQTSGGQGSGVGLGSETGVGFGIQEKALGLQLAGMASQVALNQSQANKNNAEANKIKGADTKLAESQTSLNNAMENLTNTKENTEAANYNLALQEQSKVFEEARTMANQNDIIEATKQTQIDTVIQNYYLNSLTAFEKIAGIELKGKEAAYISKQIEWYSFEAITKRMSAEAMQKMAESAAERVKNDFEIAGKKIDQEQEKILQTWIFESVKSLCNVAQTTGDIISLFKKPIQKVGEKVFEEMFDAKGKSKGFKEVIKDFKMK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 14 and 15 "
                     /inference="similar to AA sequence:MV_prot:putative.gpH"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2330..2638)
                     /locus_tag="Alpa_03"
     CDS             complement(2330..2638)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKTAKLIKCTGRMHSVETFEGETIEEKVNRIVNNGEPIKDGAPIIYTEKKDGVLPEYDIRTDRWDIAIEAMDKVNMDRMAKRENKPDVTEVPDKKDGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2642..4597)
                     /locus_tag="Alpa_04"
     CDS             complement(2642..4597)
                     /product="capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4]"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSIQKNIGKNTIGDNKKMEVDLKTYNRSTHNLSTVIRNTQSAGTLVPTCTIVMQKDDTFEINIESSVLTHPTTGPLYGSFKLENHVFFIPFRLYNSWLHNNRLGIGLDMSQIKLPQLHVTLNKLHDQPGEDEKQWSQINPSCLLSYLGIKGYGGMNNNATAPTATKNAVKVLGYWDIFKNFYANKQEENYYMIGSNDPLSITINNTQITDPNNIPQNQGTVNAKSIIEIDDVLSIYNNSNVTLWVTQQIGHSPVKMTADEIGTTSTDNQKFIIQNLKIPTGNTWWIRTIQSTQQQALVPFPLDEFDTLRDEILAKKGNQTFYLGDGKSSTQIANVFNERGDNQKLKTTRPQYGLLLKTYNSDLYQNWINTEWIDGANGINEITAVDVSDGTLSMDALNLQQKVYNMLNRIAVSGGSYRDWLETVYASGQYIERCETPTFEGGTSQEIVFQEVVSNSATENEPLGTLAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDDMHKPALDGIGYQDSVNSGRAWWDDVYINNTGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMSEAFMVLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /inference="similar to AA sequence:INSD:KDS75238.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4599..4847)
                     /locus_tag="Alpa_05"
     CDS             complement(4599..4847)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MANLKEAFKIRLLPESEEYVITIGSHLATEEKFKSEKAAQMQINKTNWDLVSALVYALKEADEWAEKNPELINQTKEAKEGK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4887..5036)
                     /locus_tag="Alpa_06"
     CDS             complement(4887..5036)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MDRNHSSYQYGNHCYNYDLMCTIVYNEPIRKQKQSKFNAKNRTNNNVKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5060..5236)
                     /locus_tag="Alpa_07"
     CDS             complement(5060..5236)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="VWYQTPQKSVKTSYELCEDVITKKYIIRKLERRLICEKIYDSEEEELKIWRQKQLKLW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5283..5495)
                     /locus_tag="Alpa_08"
     CDS             complement(5283..5495)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MAATKFSVITTGNNPSFHMSIKELPAECTYKIAVTIAKAIVPKDERIIAVVESWKLYPNENEKTEKKQKI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5555..5764)
                     /locus_tag="Alpa_09"
     CDS             complement(5555..5764)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MAETKFTAIYVNNEGKIIEREIPGMNTYKIAKKFAKILNDPEETKLVCVVESWKLYPNENEKTEKGQKN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 agtaccttga tatcgctgaa ggcgcacact acgcccgtta gggtgagtgc acgccatttc 
       61 ttatcctggt cttaaggcag ctgccttttg gtcttttgct gtcttttcct cccgctatac 
      121 actttttaaa atggacatga ttcgatttga gtgtaggttt ttgccttttc gaaagcccag 
      181 tagagttcta gttgttcaag ttctcgttct tgttttttct tttgttttcg tagtctgttg 
      241 agatattttt ctttttccca ttcttgtaca tggttgccgt ataatcgttg ttctgctcgt 
      301 cttccctctt ctagtagagc tatatattct tcctcgttat ccctatgcac tttttgaccc 
      361 attacataga tgattccttt ttctattttg tctagaaata gcatttctct ttcttcttct 
      421 gtaaatagtt gatttctata gtagattggt agatttattt tacttccgtt tcttagtctg 
      481 tagtattcta ttgttttgcc ttttttgtat acatggtttt ttgcatcttc tcttttggca 
      541 tatcccattc ctataccttt tgagcataat actttcccga taaatcctgg atgatctaaa 
      601 tcttcttttg tcatgtattt tgtgatatag ttaattgttt gttcgttcac gaagtaacct 
      661 gtaaaggtta ttccgtaatt ccatttctct tctatcaatt tgtctatacc tattccccat 
      721 actatcccgt gcaaatgtaa tctttctgtt ttctcgtgcc ctagctctgt aataaaccag 
      781 tgctttatag atttcccagt tttttttcgg atacgttcta acataaggcg aatagctttt 
      841 gtcgctattg tgtttgggtc ttctgatttg catatatttt ttagtatttc gtaattttca 
      901 tctgatattg ttaatgtcat gaagtaagcg tttggagttt gtcttaattc ttcactcatt 
      961 cttactagcc attgtctttg tttttgttgt ctacattcca tgcatttgcc acatgctgcg 
     1021 gttacgtaga gtaatctttc atcaggacag accggaggtc tgccgttatt ttttttgttt 
     1081 ggtatatacc tccggttttt tatgagttta ggatatagac acatattact tcattttaaa 
     1141 atctttgatt acttctttaa agccttttga tttgcctttt gcatcaaaca tttcttcaaa 
     1201 tactttttct cctacttttt gtataggttt tttaaacagg cttattatgt ctcctgtggt 
     1261 ttgtgctaca ttacatagag attttacgct ttcgaatatc caggtttgta gtattttttc 
     1321 ttgctcttgg tctatttttt tgcctgctat ttcaaagtcg ttttttactc tttctgccgc 
     1381 actttctgcc attttttgca tagcttctgc gctcattctt tttgttattg cctcgaatga 
     1441 ataccattcg atttgttttg atatatatgc cgcctctttc cctttgagtt ctatacctgc 
     1501 tattttttca aatgctgtta aactgtttag gtagtagttt tgtattaccg tgtctatttg 
     1561 cgtttgtttt gtagcttcta taatatcgtt ttgatttgcc attgttctag cttcctcgaa 
     1621 tactttgctt tgttcttgta aagctaggtt atagttggct gcctctgtgt tttctttcgt 
     1681 gtttgttaga ttttccattg cattattaag actcgtttga gattctgcta gctttgtgtc 
     1741 cgctcctttg attttgttag cttctgcgtt gtttttattt gcttggcttt gatttaatgc 
     1801 tacttgtgat gccattcccg ctagttgtag ccctaatgct ttttcttgta ttccaaatcc 
     1861 tacacctgtt tcgcttccca atcctactcc gcttccttgt cctccgcttg tttgtccacc 
     1921 tgcacctgtt cctccgtaga ataagcctgg gcttaaattt gcgtttagca agtgttgttt 
     1981 ttggttttcg aagtttgtgt agtcccacat gtatttggca cgttgctgat tttgctctgc 
     2041 cattttgtta ttaagctcat attgtttatc catgagttct ttttgttttg caaaggctct 
     2101 atcttccgca tctctggctt ctattccttt gatttggctg cctattgccg atgttgctgc 
     2161 tgctattatt cctcctaaca taattcaata atttaatttt acaattttcg cgctttttta 
     2221 aaagcgttat actatatact cgatataata tactgtatgc gtactgtcat acattacttt 
     2281 ttacaaaagt caatgtatcg tttcgcatac agtggctcgg ctttgccgat tagttttcag 
     2341 atggtgatcc gtctttttta tctggtactt ctgttacatc tggcttgttt tcacgttttg 
     2401 ccattctgtc catatttact ttgtccatag cttcaatagc tatatcccat ctgtcagtac 
     2461 gtatgtcata ttctggtaga acaccgtctt ttttttctgt gtagatgatt ggtgctccgt 
     2521 cttttattgg ttctccgttg ttcacaattc gatttacttt ctcttcgatt gtttcgcctt 
     2581 cgaatgtttc taccgaatgc attcgtccgg tacattttat taattttgct gttttcatat 
     2641 tttacaagtt tggaatttgt tttgcactca ttaatcttct cgctgtaatg tcaaatttaa 
     2701 tttgtaccca gaagttcata gcgtctatac tggtatctgc aaaaatgtag ttatatttta 
     2761 cagggtctat gtaggttgtc aggtctgata ttttcggatt tgttcctgct tcatacttca 
     2821 tttcataatt tctgttaagt accataaacg cctcactcat tcctgccgca aagtttccgt 
     2881 atgtcctgtt tacatttgtc atatagtcta tccaagcaac ggttttccct gcggtgcgtt 
     2941 ttgcggcttt gcctgtgttg tttatgtata cgtcgtccca ccatgcacgt ccgctgttta 
     3001 cgctgtcttg gtatccgatt ccgtctaatg caggtttatg catgtcgtct agtgatatcc 
     3061 agtcgctgtc gaagtcattt ccttgtgagt agtcgattcg tggtgtaatg cttgtgatac 
     3121 acatcatata ccctggttct gttgctctta ttttgatttt tcctcctttt tgtttgcctg 
     3181 cgtttattcc tcgccctgca agtgttccta aaggctcgtt ttctgtagcg ctgttactca 
     3241 ccacttcttg gaatacgatt tcttggctgg tacctccttc gaatgttggt gtttcacatc 
     3301 tttcgatgta ttgtccgctt gcgtatactg tttccaacca atctctgtaa gaccctccac 
     3361 ttactgcaat tctgtttaac atattgtaaa ctttttgttg cagatttagc gcatccattg 
     3421 acagagtacc gtcgcttacg tctacggctg ttatttcgtt aattccgttt gcgccgtcta 
     3481 tccattccgt gttaatccag ttctggtata agtcgctgtt gtatgttttt aacagtagtc 
     3541 cgtattgcgg tctggttgtt tttagttttt ggttatcacc tctttcattg aatacgtttg 
     3601 ctatttgtgt tgagcttttt ccatctccca ggtagaaagt ttgatttcct ttttttgcta 
     3661 gaatttcatc tcttagtgta tcaaattcat ctagaggaaa aggtactagt gcctgttgtt 
     3721 gtgttgattg tattgtacgt atccaccaag tatttccggt tggtattttt aagttttgta 
     3781 ttataaattt ttgattgtct gttgaagttg tacctatttc gtctgcagtc attttcactg 
     3841 gactatgtcc tatttgctgt gttacccata acgttacgtt tgaattgttg tagatactta 
     3901 atacatcatc tatttcgatg attgacttcg catttacggt accctggttt tgaggtatgt 
     3961 tgttagggtc tgttatttga gtgttgttga tcgtgattga tagaggatca ttactaccga 
     4021 tcatgtagta attttcttcc tgtttgttag catagaagtt tttgaatata tcccaatacc 
     4081 ctaacacctt tactgcgttt tttgttgctg ttggtgcggt tgcgttgtta ttcattccac 
     4141 cgtatccttt gattcctaag tatgatagta ggcaactcgg gtttatttgt gaccattgtt 
     4201 tctcgtcttc tcccggctgg tcgtgtagtt tatttaaagt tacgtgtagt tgtggtaact 
     4261 ttatttgtga catgtctagt ccgattccta acctgttgtt atgtaaccag ctattgtata 
     4321 atctgaacgg tataaagaat acatgatttt ctagtttgaa gcttccgtat aatggtcccg 
     4381 ttgttggatg tgttagtacg ctactttcta tattgatttc gaatgtatca tctttttgca 
     4441 tcactattgt acatgttggt acaagtgttc cagcactttg tgtatttctg attactgttg 
     4501 ataggttgtg tgtagatctg ttataggttt tcaaatctac ttccattttt ttattatcac 
     4561 ctattgtatt tttaccgata tttttttgta ttgacatatt acttgccctc cttggcttct 
     4621 ttagtttggt taattagttc tggatttttt tcagcccatt catccgcctc ttttaaggca 
     4681 tatactagtg cgcttactag atcccaattg gttttgttaa tttgcatttg agctgctttt 
     4741 tcgcttttga atttttcttc tgttgccagg tgactaccga ttgttataac atattcttct 
     4801 gattctggta acagtctgat tttgaatgct tcttttagat tcgccatgat taatagtttt 
     4861 taggattaat attaatgtga gtactgtcaa cgcttgacgt tgttgtttgt tcggtttttt 
     4921 gcgttgaatt ttgattgttt ttgcttacgg ataggctcat tgtacacgat tgtacacata 
     4981 aggtcgtaat tatagcaatg attgccgtac tgatagctcg aatgatttct atccattgtt 
     5041 gccctgtgat tttcataatt taccatagtt ttaattgttt ttgtctccaa atttttaact 
     5101 cttcttcttc gctgtcataa attttttcac atattaacct cctttctaat tttcggatga 
     5161 tgtatttttt tgtaattaca tcttcacata gttcgtaact tgtttttact gatttttgtg 
     5221 gtgtttgata ccacacgtag tgttttacct cttgtaaggt attaaatata aagccatcta 
     5281 cttcatattt tttgtttttt ttcggttttt tcattttcgt taggatataa tttccatgat 
     5341 tctaccactg ctattatacg ttcgtctttc ggtacgattg cttttgcgat tgttaccgct 
     5401 attttgtatg tacattctgc tggtaattct tttatcgaca tatgaaaact agggttgttt 
     5461 cctgttgtga ttactgaaaa ttttgttgct gccatagtta aaatgatttt ttagtttata 
     5521 catattattg aatataccca atattcgttg tttattaatt tttttgtcct ttttcggttt 
     5581 tttcattttc gttaggatat aatttccatg attctactac acatactagt ttggtttctt 
     5641 ccggatcatt tagtatttta gcgaattttt ttgctatttt atacgtattc atacctggaa 
     5701 tttctctttc gattattttt ccttcgttat taacgtagat tgctgtaaat tttgtttctg 
     5761 ccataatttt tggttttaat tatttataaa ttgaagaatt ttgatgtatt aggataattt 
     5821 cttttgaaat aatttttgtc tatccatttt gacttttgtt ttttgctatc tttgcctttt 
     5881 agtatta 
//
