FEATURES             Location/Qualifiers
     gene            complement(915..1166)
                     /locus_tag="Alpa_01"
     CDS             complement(915..1166)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MEREFKDMKECFQIRPTDESGEKWMITIGNHLATEEVFKSRKAAEMKINKTDWNLVSAFFFAIKEAVEFENKLKEQKIQETEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1362..1559)
                     /locus_tag="Alpa_02"
     CDS             complement(1362..1559)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKTFVWYNSHTNEETEGFEIIDDEIQKHYIFTKKERRLLCEKIYDKNEDYEKWMKSLQLNLFNDE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1594..1806)
                     /locus_tag="Alpa_03"
     CDS             complement(1594..1806)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MAATNWTVIRRNKKSGAIVMTNLEAKWTYKIALGIATESNINETHELICVVETSKILLKDDKEEKKESDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2309..3121)
                     /locus_tag="Alpa_04"
     CDS             complement(2309..3121)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSEELRHDPNAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKHSIKHWFITELGHNGTERMHLHGLVWGIGMDKLVEEKWQNGIVFTGTFVNEKTINYITKYITKTDEYHKEFIGQILCSAGIGNGYTQRSDAQKHTYKKGETIETYRLRNGAKINLPTYYRNKLFTEEEREKLWIDKIEKGIVWVMGQKVKIDNTEEYEALLEQARHDAIRLQGHQEQNWDKQKYFKRLEKQRKKQQKELRKWENHMFQSTEECPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3288..4232)
                     /locus_tag="Alpa_05"
     CDS             complement(3288..4232)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MLGAIMGVIGAASALQSGSNQSYNEEQAQLRQAQINKEQAKYSQGLAMEYWDYTNWENQIDHLKKAGLNPALMYAKGGTGGQTGGGQAQGVGLSPSNQEAVKAQQIGMALQLAQLKSQIEVNESVAKKNTAEAEKTAGVDTEATKIGIKLSEAQVLSERERKNVLYWEAEVAQSESVLKEALANTEQFNLQKVQWDIRMVEKGYEELSERVAMLKRENKIGDATAEMQIEQYKANLVDTWAGAMLKMAQTETQKEEVKAIAERLKQKDYELDQKDTEIIQRWVDLGIKGVSEVGELLTGIKKLSHLAKKLNIGK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 14 and 15 "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4399..4722)
                     /locus_tag="Alpa_06"
     CDS             complement(4399..4722)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKTRIVPSFFNRMKPCECFEGETIEEKVNRVVNNNEPITDGAPIIFTEKKDGVLPEYNPRTDRWDIALTAMEKMDRARKAKKEQGVKPEDFGKDVPNKLEGGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4725..5765)
                     /locus_tag="Alpa_07"
     CDS             complement(4725..5765)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="LDELREEILLTKGNTAYIVNNSNNVPLLKSFTQRMTTNLLNTTSSQFGLALKTYNSDLLQNWINTEWIEGEQGINEISAVDVSNGQLTMDALNLAQKVYNMLNRIAVSGGTYRDWLETVFTGGNYMERCETPVFEGGMSQEIVFQEVISNSASGEEPLGTLAGRGISTEKQKGGHVKIKVTEPCYIIGIGSITPRIDYSQGNEFYAYHQTVDDIHKPALDGIGYQDSVNWQRAFWDRQYNTTGQIQQPAVGKTVAWINYMTNINRTFGNFADNNSEAFMVMNRNYEYRSGTTFGTTAINDLTTYIDPVKFNYIFADTNLDAMNFWVQTKFDIKCRRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:AHN52939.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ttgttatttg caattataac tctttgtttg gatgtcatgc tttttagtat gtataaatct 
       61 tgatttgatg gtagtttatt gattgcgaga tctccttcat ctgggttgaa ttcaccgatt 
      121 tcttcgggtt taaatgttag atatgcttct gacgctgaac tgaagaatgt taattctaga 
      181 tcatcgtttt gaaatatacc ggcaggctgg aattgtagtg ttgatttgtt gttgatgatt 
      241 ggtatttgca ttttttccgg attatcgctt acgaatatat ccgttcctgt tgttactgtc 
      301 acttttgcaa ctttaggtgt tgctccgatt gtccaaaaat tttcttcctg tgtgtttgcg 
      361 tagtagtttt taaatatatc gtagtagccg attagtggta ctgcgtttat gtctatgttg 
      421 actttttctc ctgtattgcc ggttaccgaa ccataacctc ttacccctag gtatgctaat 
      481 aaacaacttg gattgacttg tgtccatgga tgattgttgt tggcttggta tggattgtct 
      541 gctattgtta ctgttgttct cagctgtggt aatttgattt ggctcatatc gagacctacc 
      601 tttgttctgt tgttgtgtaa ccagctgtta tacagtcgaa taggtactgt aaacaggtga 
      661 ttctcatgtt tgaagctacc gaataacggc cctactgttg ggtgagttag tacatgactt 
      721 tcgatgttaa tgtctaatgt atctcctttt tgtgccagta aacataaggt tggtacaagt 
      781 gttcccgggc tttgagtgtt tctaaatatg gttgataagt catgagttga catgttatat 
      841 gtcctcagat caacttccat ttttttgtta tcaccaatgg tgtttttacc aatgtttttc 
      901 tttagtgtca tggtttattc ctccgtttct tgtatttttt gttcttttaa tttattttcg 
      961 aattcaactg cttcttttat tgcaaagaag aatgcgctta ctagattcca atcagttttg 
     1021 ttgattttca tctctgctgc ttttctgctt ttgaacactt cttctgttgc tagatgatta 
     1081 ccaattgtga tcatccattt ttcaccgctt tcatcagttg gtctgatctg aaagcattct 
     1141 ttcatgtctt taaattctct ttccattgtt aatatttttt tggatcaatg ttaatatgag 
     1201 tactatctac cgagttagtt gtcgtttgtt cggttttttg agtactgtta ctattatttt 
     1261 tactgacact tagtgacata gtacaacttt gtgctgttag tactgctgca atactgataa 
     1321 ttgcagtgca aatgatctct acgattttgt aaatgatttt tttattcatc gttaaataaa 
     1381 tttagttgaa gacttttcat ccatttttca taatcttcgt ttttgtcata aatcttttca 
     1441 cataataacc tcctttcttt tttagtgaat atataatgtt tttgtatttc atcatcaatt 
     1501 atttcgaatc cttcggtttc ttcgtttgtg tggctgttat accatacaaa cgttttcatc 
     1561 gctttgaatg tatcgaatgt ttttttaccg atactataaa tcgctctctt ttttctcttc 
     1621 tttatcatct tttagtagaa ttttagatgt ttccaccaca catataagtt catgtgtttc 
     1681 gttaatgttt gattcagttg cgatccctag cgctattttg tatgtccatt tagcttctag 
     1741 attagtcatt acgattgcac cgcttttttt gtttcttctg attactgtcc aatttgttgc 
     1801 tgccatgatt atacctcctc ttctttgttt tcgtgaatac ctttgtctcc aacgatttct 
     1861 ctgataatca cttttgttct ttcttcgtcc attgcgaata cttctacgca aatttcattt 
     1921 ttaatttttt cccaatacat aatttttttg tttttaatgt tccatgtgga acggttaata 
     1981 ctctttgttt tttttgaaca ttacaaagat acgtgtattt tctgattctc caaatattta 
     2041 ctgattttta tagcttttct taacgtttcc atagcgcgag cgacaaataa ggggttctag 
     2101 gggcataccc ctagagcgtt agcaccttga tatcgccaaa ggcgcacacc acgacctttt 
     2161 ggtcgggtgc acgcccttat ttaaatcagg tcttaaggta gctgtccttc tgtcttactc 
     2221 taccctttcc tccctgtaaa attaaaataa aattttccgc atggtgtagt ccgttcgtta 
     2281 cggacaggat gttttcgtga aacgaaaact aaaaaggaca ttcttctgtt gactgaaaca 
     2341 tgtggttttc ccactttctc aattcctttt gttgcttctt tcgctgtttc tctagtcttt 
     2401 tgaagtattt ctgtttgtcc caattttgct cttggtgacc ttgtaatctt atcgcatcat 
     2461 gtcttgcttg ctctaataat gcttcatatt cttctgtgtt gtcgattttc actttttgac 
     2521 ccattaccca tacgattccc ttttctattt tgtctatcca cagtttttca cgttcctctt 
     2581 ctgtaaatag tttgtttctg tagtatgtag gtaaatttat cttcgctccg tttcttaatc 
     2641 tgtatgtttc aattgtttcc ccttttttat aagtgtgttt ttgcgcgtcc gaacgctgtg 
     2701 tatatccatt cccgatacca gctgaacaca atatttgacc aatgaattct ttgtggtatt 
     2761 cgtccgtctt tgtaatatat tttgtaatgt agtttatagt cttttcgttt acgaacgttc 
     2821 cagtgaatac tatcccgttt tgccattttt cttctactaa cttgtccata cctattcccc 
     2881 atacgagtcc atgtaggtgc atacgttctg taccattgtg tcctaattct gtaatgaacc 
     2941 aatgttttat cgaatgtttt aactttcgtc ggcatctttc tagcatgagg cgcattgcct 
     3001 ttgttgctat agtatttggg tcttcgctgt tacataattt cttgtattct tctagttttt 
     3061 cttcggaaaa ggttagtgtc ataaaataag catttggatc atgtctcaat tcttcgctca 
     3121 tgcgcactaa ccattccctt tgtttctgtt tcctgcattc caagcatttt ccacaagctg 
     3181 ccgtaacgta taacacccta taatcttcac attttggagg attccagttg tttttcttgt 
     3241 ttggcaagta tttcttgttt ttaattaact tgggatagag acacatttta ctttcctata 
     3301 tttagctttt ttgctaagtg tgacaatttt ttgattcctg taagtaattc tcctacttcg 
     3361 ctgacacctt tgattcctag atctacccat ctttggataa tttcggtatc tttttgatcc 
     3421 agttcgtaat ccttctgttt caatctctca gctatagctt ttacttcctc tttttgggtc 
     3481 tcggtttgcg ccattttgag catcgctcct gcccatgtat ctactaagtt tgctttatac 
     3541 tgttcgattt gcatttctgc tgtagcatca ccgattttgt tttcacgttt gagcatcgct 
     3601 actctttctg acaattcttc atagcctttt tctaccattc ggatgtccca ttgcactttt 
     3661 tgcaagttaa attgctcggt attagctaat gcttctttaa gtactgattc tgattgagca 
     3721 acttctgctt cccaatataa cacatttttc cgttctcttt ctgaaagtac ttgtgcttcg 
     3781 cttaatttaa tacctatttt tgtcgcttct gtgtccactc ctgcggtttt ttctgcttca 
     3841 gcggtattct tctttgctac agactcgtta acttcaattt ggctctttaa ttgcgccagt 
     3901 tgcaaagcca ttcctatttg ctgtgctttt actgcttctt ggttacttgg cgataatcct 
     3961 actccttgtg cttgtccgcc acctgtttga cctcctgttc cacctttggc atacattagt 
     4021 gcaggattca atcctgcttt ctttaggtgg tctatttgat tttcccagtt ggtgtaatcc 
     4081 caatattcca tcgccagtcc ttgactgtac ttggcttgtt ctttgttgat ctgtgcttgt 
     4141 ctcagttgtg cttgttcttc gttgtaactt tggttacttc ccgattgtaa ggctgacgct 
     4201 gcaccgataa ctcccattat tgctcctaac ataacttgat aatttaaatt tacatttttc 
     4261 gctctttttt taaaaagagt cttactatat acttgatata atataccaca tgcgtaccat 
     4321 ttgcgatttt attgagagga atttttacat tcctctcgca aatatccttg tggtcttacc 
     4381 gccaaagccg gatggcgttt agttctcact tggcgatcca ccttctagtt tgttcggtac 
     4441 atctttaccg aaatcttcgg gcttcactcc ttgttctttt ttggcttttc tagctctgtc 
     4501 cattttttcc attgcggtca gtgctatgtc ccacctgtca gttcttggat tgtattcggg 
     4561 taatacaccg tctttttttt ccgtaaatat gataggtgct ccgtccgtga tcggttcatt 
     4621 gttgtttacc actctgttta ctttttcttc gattgtttca ccttcgaaac attcgcatgg 
     4681 tttcattctg ttaaagaatg atggtactat tcttgttttc ataattataa atttggaatt 
     4741 tgttttgcac tgataagtct acgacatttg atgtcaaatt ttgtttgtac ccaaaagttc 
     4801 attgcgtcta ggttcgtatc tgcgaatata taattaaatt tcacagggtc gatgtacgtt 
     4861 gtcaagtcat ttattgctgt cgttccgaac gttgttcctg atcggtattc gtaatttctg 
     4921 ttcattacca tgaatgcttc agaattattg tcagcgaaat ttccgaacgt tctgtttatg 
     4981 ttggtcatgt aatttatcca tgctactgtt ttacctactg ccggttgttg gatttgacct 
     5041 gttgtattat attgtctgtc ccaaaatgct ctttgccagt ttacgctatc ttggtagcca 
     5101 attccgtcta atgccggctt gtgaatgtca tctactgttt ggtggtatgc atagaactcg 
     5161 ttcccttgtg agtaatcaat tcgtggtgtg attgatccga ttcctatgat atagcatggt 
     5221 tctgttactt tgatttttac gtgaccgcct ttttgttttt ctgtactgat acctctacct 
     5281 gctagtgtac ctaatggttc ttctccgctt gcactgttgc tgatcacttc ttggaatacg 
     5341 atttcttgtg acatacctcc ttcgaataca ggtgtttcac atctttccat atagttacct 
     5401 cccgtgaata cggtttctaa ccaatcacga tatgtaccac cgcttacggc aattctgttt 
     5461 aacatgttat aaactttttg cgctaagttc agagcatcca ttgtcagttg tccgttactt 
     5521 acatctaccg cagagatttc gttgatacct tgttctcctt cgatccattc ggtgttgatc 
     5581 cagttttgca ataaatcgct attgtaagtt tttaatgcaa gtccgaactg gcttgatgta 
     5641 gtgttcagta aatttgtggt cattctttgt gtgaatgatt ttaacagtgg tacattatta 
     5701 ctattgttta cgatgtatgc tgtatttcct tttgttaaga ggatttcttc tcttagttca 
     5761 tccaattgtc ctagattgtt atttgcaatt ataactcttt gtttggatgt catgtctttt 
     5821 tagtatgtat a 
//
