FEATURES             Location/Qualifiers
     gene            complement(157..432)
                     /locus_tag="Alpa_01"
     CDS             complement(157..432)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="LEIQENLIPLRRIEVTAIINALKIIKIMQKFIISVKEKQTGRDVIPPYIVNSLEGLGHYSERVSQLGLIVIVDSIREENDFVELKTQRDEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(932..2020)
                     /locus_tag="Alpa_02"
     CDS             complement(932..2020)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MGLSEKCIAPLVLGGIIAAGASLAGNAIGSASQNKTNQTSIDINRENNAFNAHQAQIQRDWQEKMWGMNNSYNSPNAMISRGLNPFVQGSAAMAGSRSPASGGAAASAASAPSLQAFRPDFSDVGSALASMAQARAAMINAEQNAALTPYKMQQILGDTNYRNIGVGQSGYWTASTGRRSALLDQSKEYQELKNMEFAGRLTSAQEAQILLDSEAQQVLNKYLDEQQQADLFIKGQTLSNLYAQGSLTEAQYKTEMAKAVKTAAETNGIRINNKIASQTADSLIYANIQSNRARGLSSLWDSKNTNVLKNIEYSKDKALRDYYKWSSKHKQKDVDSYELRNAVDYGTRIFQGIGNSIGTKGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2050..2493)
                     /locus_tag="Alpa_03"
     CDS             complement(2050..2493)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MRNFAYKNPDFVKDDYVPELVENHPCYQESVYDSVMYDETSDGDLIQCDMTQILLNQEKYRRLLGDMNIQNILAQMHPTQSTVMDGMTDEDRFACVISRHCQTMSERQAVLQQLASEKSELTAYAEAMLAEQQSAPDPSPAPDTSVQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2504..4243)
                     /locus_tag="Alpa_04"
     CDS             complement(2504..4243)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSDFNPLNRARISTHRSSFDLSSKKLFTAKVGEILPCYWQIAIPGNKYRISSDWFTRTVPVNTAAYTRIKEYYDFYAVPLRLISRALPQAFTQMTDYITSAASSTANSSTLTSVPFVSQTLFNAFFQTANAGDQPNTRDDAGLPIVYGSCKLLDMLGYGSMIASNNPSKAAITKKYLGVDSLSDADNPLVYQTSQTVNALPFLAYQKIYYDFFSNSQWEKHKAYAYNVDYWSGAGNIGLVTDMVQLRYANYPKDYFMGMLPSSQYGSVAVLPSISSSSDSRSLLYYEPSSSATAALQSAGGSSSSVRLSQTVSSSQGIRLNSDLSALSIRATEYLQRWKEIVQFSSKDYSDQMAAQFGIKAPEYMGNHSHYIGGWSSVININEVVNTNLDADSSQASIAGKGISSNSGHTLTYDCGAEHQIIMCVYHAVPMLDWNLTGQAPQLTVTAISDFPQPAFDQLGMQSVPSLNLQNNPGRNVSGALGYNLRYWQWKSNIDTVHAGFRAGAAYQSWVAPLDGWNVLTSSGAWSYQSMKVRPQQLNSIFVPQVDSANCSVAFDQLLCNVNFQVYAVQNLDRNGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4271..5806)
                     /locus_tag="Alpa_05"
     CDS             complement(4271..5806)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MRVKTAGSAFKYSYFVTLTYDNEHIPLMRCKVLHSEYEDVVGISGDIHFGDEYHHYIPVSEYQCDDSSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFLSIDAIRSFIHKTQALGKTDYPVAEQYGRDNLIPFLNYVDVQNYIKRLRKYLFKVLGSYESLHFYAVGEYGPVHFRPHFHLLLFTNSDEVAEVLRQCHDKSWKFGRSDFQRSAGGSASYVSSYVNSLCSAPLLYRSCRAFRPKSRASVGFFEKGCDFVEDEDPYAQIEKKIDSVVNGRCYNFNGVSVWSTPPMSYVRTLLPRFSSARNDDSTAIIRILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFVNCSSDVDIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIKTGIEYETKKNYESLRDVFNIRSANPDISDCMFALPANGQERDVLSNVSRETVQLLEQLRYRSAAYCRDMIKHKKLNDANGIFNRMV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ctgccttaag caaatcagga gaaaatttca tataaccaag agcctgtaat ggcaataaat 
       61 ataaatataa acaataaaat caatcaaaca ccgatagcgc taaggatata gcctaaagca 
      121 gcagaaatag cgccaataac aatcttccaa atatgattac tcttcatctc tctgagtttt 
      181 aagttcgaca aaatcatttt cctctctaat cgagtccaca ataacgataa gacccaattg 
      241 agaaactcgt tcagaataat gtccaagacc ttcaagagaa ttaacaatat aaggcggaat 
      301 aacatcacga ccagtttgtt tttctttaac ggaaataata aacttttgca taattttaat 
      361 aatttttaaa gcattaataa tagctgtaac ttctatacga cgcaaaggta taagattttc 
      421 ttgtatttcc aaaatttttt ttagaaattg tgggaacagg accatttgtg atggagtgtg 
      481 agttgtacgt ttatggacaa gggataggag aatccgagag gataactcgg atttgcttcg 
      541 catacaacta ggggcttcgc ttaattaaca ctcattaaga gagttgagat ctgaacaagt 
      601 ataagcactg gaattgacaa agtgtaactc ctggacttga caaaatgtaa ctcctggact 
      661 tgacaaaatg taactcctgg acttgacaaa atgtaactcc tggacttgac aaaatgtaac 
      721 tcctggactt gacaaaatgt aagatatata caaaaagggt ataggcacgg caggtcagat 
      781 agaacctgcc tttgcgcacc ttcgtgctaa aataccggag cggaacgctc ctataaggaa 
      841 gtcgctccgc tccatatttc gatcaggccc tacgcgggcg gcgggtgtat atcgctcaaa 
      901 cgccgcgatg ggcttttagt cctgaagtac gctacctacc cttagtaccg attgaattgc 
      961 caataccttg gaatatacgt gtaccataat ccacagcatt acgtaactca taagaatcaa 
     1021 catccttctg tttatgttta gaactccact tataataatc acggagagcc ttatccttgg 
     1081 aatactcaat attcttaaga acattggtat ttttcgaatc ccacaatgaa gatagacctc 
     1141 gagcacgatt agactgaata ttagcataaa tcagagaatc agcagtttgg gaggcaatct 
     1201 tattattaat acgaatacca ttagtctcag cagcagtttt tacagcttta gccatttcag 
     1261 ttttatactg agcttctgta agagaacctt gagcatacaa attagataag gtctgacctt 
     1321 taataaacag atcagcctgt tgttgttcat caaggtactt attaagcacc tgttgggctt 
     1381 cagaatcaag gagaatctgc gcttcttgag cagaagtaag acgaccggca aactccatat 
     1441 tcttaagctc ctgatattcc ttagattgat ccaggagtgc agatcggcga ccggtagacg 
     1501 cagtccaata acctgactgg ccaacaccaa tattacgata attggtatcg cctaagatct 
     1561 gctgcatctt atacggagta agagcagcgt tctgttcagc attaatcata gcagcacgag 
     1621 cctgcgccat agaagcaagg gcagaaccaa catccgaaaa gtcgggtcga aaagcctgta 
     1681 aactaggggc agaagcggca gaagcagcag caccaccaga agcgggagac ctagagccgg 
     1741 ccatagcggc agaaccttga acaaacggat tcaaaccacg ggaaatcatc gcattggggg 
     1801 aattatagga attattcatt ccccacattt tttcctgcca gtcacgctga atctgagcct 
     1861 ggtgggcatt aaatgcatta ttctcacgat taatatcgat actagtctga tttgtcttgt 
     1921 tctgagaagc ggatccgatc gcattaccag caagagaagc accagcagca ataataccac 
     1981 caagaacaag cggagcaata cacttttcgg agagccccat taaggggctt tctccaatat 
     2041 catagaacct cattgaacag aagtgtcagg ggcgggcgac ggatcgggcg ctgactgttg 
     2101 ctctgccaac atcgcttcgg cataagccgt tagctcagac ttctcactag ccaattgctg 
     2161 taacacagct tggcgttccg acattgtctg acaatgacgg gaaattacac aagcaaatcg 
     2221 gtcttcgtca gtcataccat ccataacagt agactgagta gggtgcattt gagcaagaat 
     2281 gttctgtata ttcatgtcac caagtaagcg acgatatttt tcctgattta acaagatttg 
     2341 ggtcatatcg cactgaatca gatcaccatc agaagtttca tcatacatca cagaatcata 
     2401 tacagattcc tgataacatg gatgattttc aaccaattca ggaacataat catccttaac 
     2461 aaaatcagga tttttataag caaaatttct cataacaaac aaattaataa ggtaaaccat 
     2521 tacgatccaa gttttgaaca gcatatactt ggaaattaac attacacaac agttgatcaa 
     2581 acgcaacaga acaattggca gaatcaacct gaggaacaaa tatagaattt aactgttggg 
     2641 gacgaacttt catagactga taagaccaag caccagagga agtcaacaca ttccaaccat 
     2701 caagaggagc aacccaagac tgataagcag caccggcacg aaatccagca tgaacagtat 
     2761 caatattaga tttccactgc cagtagcgaa gattataacc taaagcacca gaaacattac 
     2821 gaccgggatt attctgaaga ttcagagaag gaacagactg cataccaagc tgatcaaatg 
     2881 caggctgcgg aaagtcagat atagcagtaa cagtcaactg aggagcctga ccggtcaaat 
     2941 tccaatccaa cataggcaca gcatggtata cacacataat tatctgatgt tcagcaccac 
     3001 aatcataagt aagagtgtgt ccagaattac tggatatgcc tttaccagca atagaggctt 
     3061 gggaagagtc ggcatcaaga ttagtattaa ctacttcgtt aatgttaatt acgctagacc 
     3121 aaccaccaat ataatgtgaa tggttaccca tatactcggg agctttaata ccaaactgag 
     3181 cagccatctg atccgaataa tctttactac tgaactgaac tatctctttc caacgctgaa 
     3241 gatattctgt agcacgaatt gagagagcag aaagatctga attaaggcgg ataccttgag 
     3301 acgacgatac agtttgagac aaacgaacag atgaggaact acctccagca gattgcaaag 
     3361 cagctgtagc agaagaagag ggctcataat aaagcaagga acgagaatca gaagaagaag 
     3421 aaatagacgg taaaacagct accgaaccat attgagaaga aggaagcata cccataaaat 
     3481 agtccttagg ataattcgca taacgcagtt gaaccatatc cgtaaccaat ccaatattac 
     3541 cagcaccgga ccaatagtct acattatagg cataagcctt gtgtttctcc cattgactgt 
     3601 tactaaagaa atcataatag attttctgat aagcaagaaa tgggagagca ttaactgtct 
     3661 gcgaagtctg ataaaccaaa ggattgtcag catcactaag agaatcaacg cctaaatatt 
     3721 ttttagtaat agcagcctta gatggattat tagacgcaat catagaacca taaccaagca 
     3781 tatcaagtaa cttacaggaa ccgtaaacaa taggaaggcc ggcatcgtct cgagtattag 
     3841 gctgatcacc ggcattcgcc gtttggaaaa acgcattaaa tagagtttgt gaaacaaaag 
     3901 gaacagaagt aagtgtagat gaattagcag tagagctagc cgcactagta atataatctg 
     3961 tcatctgggt aaacgcctga ggaagcgcac gagaaatcag acgtaacggc acagcataga 
     4021 aatcataata ctccttaata cgagtataag cggccgtatt aacaggaacg gtacgggtaa 
     4081 accaatccga agaaatacga tacttattac caggaatagc aatctgccaa tagcatggta 
     4141 agatctcacc aaccttagca gtgaataact tcttcgaact taagtcgaat gaagatcgat 
     4201 gcgtagatat tctcgctcga ttcaagggat taaaatcact cataatgtaa taaattaaaa 
     4261 gttataaaaa ttaaaccata cggttaaaaa taccattagc atcattcaac ttcttatgct 
     4321 taatcatatc acgacagtat gccgcactac ggtaccggag ttgctcaagg agttgaaccg 
     4381 tttcacgtga aacatttgac aagacatcac gctcctgccc gttcgcaggc aacgcaaaca 
     4441 tacaatccga tatgtccggg ttagcggagc gtatgttgaa tacatctcgt agactttcat 
     4501 aatttttttt cgtctcatac tctatacctg ttttaatgat aaaccgaata cgattggagt 
     4561 aagcatcaag attagaaccg aaggaaggca aatgccaatt acggaagaat ttatagacat 
     4621 ataagaacag ccgatataac ttattaataa aagattcaat atcgacatca ctagaacagt 
     4681 tgacgaaccg agtaaggcac cgagcattat gtaatataat cttgtcatca tcagatagaa 
     4741 tcgaattaga ttgaagatat tgataataag cacgtacaag actcaagacc gagtcttggt 
     4801 tatagtcaat gaagccgaac ctcgcaattc ttgctggcgt cgaatgtaca gctcgaagaa 
     4861 ttctaataat cgcagtacta tcgtcattgc gagcagacga gaatcggggg agtaaggtac 
     4921 ggacatacga catgggagga gttgaccaaa cactgacacc attgaagttg tagcatcttc 
     4981 cgttaacgac agaatcgatt tttttctcaa tctgcgcata agggtcttcg tcttccacga 
     5041 aatcgcagcc cttttcaaaa aatccgacag atgctcgtga cttgggtcta aatgcgcggc 
     5101 atgaacgata taagagggga gcagagcaca agctgttaac gtaactcgat acgtacgaag 
     5161 cagatccgcc agcggaacgt tggaaatctg aacgaccgaa tttccaactc ttatcgtgac 
     5221 attgtcgtag aacctctgcg acttcgtccg agttcgtgaa taataacaaa tggaaatgcg 
     5281 gacggaaatg gactggacca tattcgccca cagcgtagaa atgtaacgat tcataagagc 
     5341 ctaatacttt aaataaatat ttacgtaaac gttttatata gttctggaca tcaacataat 
     5401 tcagaaaggg aataaggtta tcacgaccgt attgttcagc aacgggatag tccgttttac 
     5461 caagggcttg cgtcttatgg ataaaactac gaatagcatc gatagaaaga aaccaattgt 
     5521 ccttaacagg aacatattcc ttaatttcac ggtcatacgg aacagtaccc tgtacctgtt 
     5581 cgaaaaatat atgacgcaat gcggagctat catcacattg atattcagaa acagggatat 
     5641 aatgatggta ttcatcacca aaatggatat ctcctgaaat gcctacaaca tcctcatatt 
     5701 cagagtgaag aaccttacaa cgcataagag gaatatgctc attatcatac gtaagtgtaa 
     5761 caaaataaga atacttaaaa gcacttccag cggtcttcac acgcatggac gctttc 
//
