FEATURES             Location/Qualifiers
     gene            complement(129..311)
                     /locus_tag="Alpa_01"
     CDS             complement(129..311)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="METQKEYIIVVNGRPYFSVVDVKHLSAVIDDAKARFGADSKIEVVMQTTEPYAPGKDNGN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_022044633.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(318..470)
                     /locus_tag="Alpa_02"
     CDS             complement(318..470)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VSAVVAALSAFFLTSCSTSHYVAQSVSSFVQGDTTTTIIKYEQVGSIKKK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 32 and 33 "
                     /inference="protein motif:SignalP:4.0"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 18 and 19"
     gene            complement(487..630)
                     /locus_tag="Alpa_03"
     CDS             complement(487..630)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MEMPEVVIALPNGVKIACTAKSAKYLIIGLGLESLLKDGEVEKPADK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(634..789)
                     /locus_tag="Alpa_04"
     CDS             complement(634..789)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MLDKDLILVVGLAELVAVNEYLRERGDEQVCSVLDGIVKGFRLILCNSKQK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1468..2472)
                     /locus_tag="Alpa_05"
     CDS             complement(1468..2472)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MSILAGLGAAAASFAMKEGHNAIAQSRNEKNMALEHDYWKRRVNQLEEMNKPSRQVAKWRSAGIAPQAVFGNSPGGAGIVTDASTPNSQTPMGSSDFNFVTTIAERQRMKNEKAIADATVNKLNAEAEKLRGDTKDPNVTKDSQRLEFDWNLVKKQREQVQLAVDEINKEFQRAINEADVQIKHGLYSETLAKIDKLIADKDVSEEMKQNLQKQRDLIESQISATQAQTDLIKAQTSATQAQTETENALRDGRIKLTEREANKILADIGLSEARSLNEYESLIKAMTGTQPASSLWGYIDRLIARGDSRLGGYENASDLREKLARALVRYIKAD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 15 and 16 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.HMPREF9141.0987"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_022044636.1"
                     /inference="similar to AA sequence:INSD:WP_018697176.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2576..2905)
                     /locus_tag="Alpa_06"
     CDS             complement(2576..2905)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MYKKKKITRPSCFSKESSSLCDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMASTMASESEARALKDGAKEPNSD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2922..4841)
                     /locus_tag="Alpa_07"
     CDS             complement(2922..4841)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MPKYRIPSDYENQTPRAIHSRVAPSYGTIHPGLAVPVHHRHLNVGERIRGRIDSLLQSQPMLGPLMNGFKLITIATFTPDSAIYGWMRNGRRYEPDEYTKFGKVYFPLAGPNIGNYIDPAFQIARRVRRLTFGLELNADRAKIYESWVSDELNSTGDDGQPTHIGRGGLWDWLGIAPGAVCPNLGIKLPSVAGVRGQFYPPSFKFNGAPFFAYFLSHYYYIANMQEKYMYFTRGVGEMQRVRPDGQQESLYRPFFSDVFTSFKPDDFLLYLDTLSYRTRVGAEIDALTLQLEGIPINCVQAMACAGIQGYGGLLSVPYSPDLFSNIIKQGSSPAVEIEVMNALDASTDTGFSVAVPELRLKTKLQNWMDRLFVSGGRVGDVFRTLWGVKSSAPYVNKPDFLGVWQASINPSNVRAMANGSASGEDANLGQLAACVDRYCDFSGHSGIDYYAKEPGTFMLIAMLVPEPAYFQGLHPDLASISFGDDFNPELNGIGFQQVPRHRFTMMPRGMDDITAHQEKNPWLGYAGTGVTIDPNMASVGEEVAWSWLRTDYPRLHGDFAQNGNYQYWVLARPFTSYFPDAGTGFYGDAESYSTYINPLDWQYVFVDQTLMAGNFAYYGYFDLKVTSSLSANYMPYLGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4841..5509)
                     /locus_tag="Alpa_08"
     CDS             complement(4841..5509)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="LFLDRLRKDYSKQIRHWFVCEFGTLYGRPHYHGILFDVPQTLIDGYSPDVPGHHPLLASRWKYGFVFVGYVSEETCSYITKYVTKSINGDKVRPRIISSFGIGSNYLDTEEAVLHKLGNQHYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFINPPVEFSWQGQKFSSKLERDEMRRSTLNQNITSGLTPALPLPHTERVSSFNRFKKNMDKNKEFK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:KDS68909.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gatcatactg aataaccaaa acgggcattt tgcccgcttt ggttttccaa gtcacagaat 
       61 cggaccaagc tattaacgct tcaagacctc gccacgaatt cgaagccata agacgctcaa 
      121 aaatgtcctt agttaccgtt atcctttccg ggcgcatacg gttcggtagt ctgcataacg 
      181 acttcgattt tcgaatcagc accgaaacgt gccttagcgt catcaatcac agcagaaaga 
      241 tgcttaacat ctacaaccga aaaataagga cgaccattta caacaataat atactctttc 
      301 tgagtttcca taataaatta ctttttcttt atagagccaa cttgctcgta tttaataata 
      361 gtagtagtag tatcaccttg cacaaagctg gaaacacttt gagcaacata gtgagaggta 
      421 gaacaagacg taagaaaaaa cgccgaaaga gcggcaacaa ccgcactcac aagcgtccaa 
      481 aatttcttac ttgtcagcag gtttttcaac ttctccatct ttcagaagtg attccaaacc 
      541 aagaccaata ataagatact tagcagattt agcagtacac gcaatcttaa ctccattagg 
      601 aagagcgatt acaacttcgg gcatttccat aatttacttt tgttttgaat tacacaatat 
      661 aagccgaaaa cctttaacaa taccatcaag cacactacaa acttgctcat caccacgttc 
      721 acgaagatat tcgttaacgg caacaagctc tgcaagacca accactaaaa taagatcctt 
      781 gtctaacata atattattat aaattccgtt tcaaaagtgc ttatgcacag tgtatcaagt 
      841 ggctatactc tcctataatt taacataatg gtaatagtac tgattgccag taagttaagc 
      901 aataggatag gggagtatct tgccacagaa aagagggtta ataaaaggtg gcaagacgtc 
      961 aaagaacgag tagtagagaa ctacagcgca aatatacaaa taatatttac aagtccaaaa 
     1021 aaaagtgaaa attttacaat tatatccgaa tatgaatttc gcgcgcacgc gtgaaagcac 
     1081 acgtacgcac gttacatatc ggaaacgttc cgtatcttgg gtcatcaaga tacttcacta 
     1141 taaggaagtt aattaaacga agcagtccgg cacgccattg cttcgggtta ttgagtgaac 
     1201 ccaaagcaaa ggcggccgaa cgatcagaac gtaacgcggc tataaaaaga tgataacgca 
     1261 ttaaagatca ataatttaca tttgtaaatt acattttgta agttacgcat gtaaaaaaaa 
     1321 ggcccggaaa attccgagcc ttacactact tacgagaaga caacttacaa acgcatttcc 
     1381 agataaacca gaaaatgaac gcaaaaaaag cgagaactaa aagttcacaa aaaccgatat 
     1441 gtcccaaaaa taaaaacata cacaaaatta atcagccttt atgtatctaa caagagcacg 
     1501 agcaagtttt tcacgcaaat cgctcgcatt ctcataacca ccgagacgag aatcaccgcg 
     1561 ggcaatcaga cgatcaatat aaccccaaag agaagatgcg ggttgagttc cggtcatagc 
     1621 cttaataagc gattcatact cattaagcga acgagcctcc gacaaaccaa tatcggcaag 
     1681 aatcttattc gcttcgcgtt ctgtaagctt aatacgacca tcacgaagag cgttctccgt 
     1741 ttcagtttga gcctgcgtag cggaagtctg ggccttaata agatcagtct gggcttgagt 
     1801 agcagaaatc tgcgattcaa tcaaatcacg ctgtttctgc aaattctgct tcatttcctc 
     1861 cgaaacatcc ttgtcagcaa ttaacttgtc gattttcgcc aaggtttcag aataaagacc 
     1921 atgtttaatt tgcacatcag cttcattaat agcacgctgg aactctttgt taatttcatc 
     1981 aacagcaagc tgaacctgct cacgctgttt cttaacaaga ttccaatcga attcaagacg 
     2041 ttgcgaatcc ttggtaacat tcggatcttt cgtatcgcca cgaagtttct cagcttcggc 
     2101 gttcagctta ttaacagtag catcagcaat tgccttctcg tttttcatac gctgacgctc 
     2161 ggcaatagta gtaacaaaat taaaatcact ggaacccata ggagtttgag aattcggagt 
     2221 tgaagcatca gtaacaatac cagcaccgcc gggagaatta ccaaagacag cttgaggagc 
     2281 tataccagcg gaacgccatt tagcaacttg acgagaaggt ttattcatct cttcaagttg 
     2341 attaacgcgc cgtttccaat aatcatgctc caaagccata tttttctcat tacgagactg 
     2401 agcgattgcg ttatgacctt ctttcatagc aaaggaagcg gcggcggcgc ctaatccagc 
     2461 taaaatactc atagttgttc aatttttctt taaaaaatag ggtaggggac gtgctttccg 
     2521 cactccgcaa tatatatcaa gtatattgcg gcccctaccc aaagaaattg ttcaattagt 
     2581 cggaattcgg ttccttagct ccatccttca aagcacgagc ctcagattcg gaagccatag 
     2641 tagacgccat atccatcaaa tcaagtttac caactgtagg atcggtaaat acattgacat 
     2701 caccggacgc aatagattca gcatcatcaa aagcagcggg caaaggttta cgagtggaaa 
     2761 tgccttgtaa atcaacacca ccgttaagat agtaagacat aggatgcgca acaacaacct 
     2821 tgtccacaaa aggattatag tcacaaagcg aagaagattc ttttgagaaa caagaaggac 
     2881 gagttatttt ctttttctta tacataacaa tcgatattta actaacgacc aagatacggc 
     2941 atataattcg ctgaaagtga cgaagtaacc ttaagatcaa aataaccgta atacgcaaaa 
     3001 ttaccagcca ttaaagtttg atcaacaaaa acatactgcc agtcaagagg attaatataa 
     3061 gtcgaatagc tttcagcgtc accataaaag ccggtaccag catccggaaa ataagaagta 
     3121 aaaggccgag ccaaaaccca gtattgataa ttaccatttt gcgcaaaatc accatgcaaa 
     3181 cggggataat cggtacgaag ccatgaccac gccacctcct caccaacgga agccatgtta 
     3241 ggatctatag taacaccagt accagcataa cccaaccaag gatttttttc ctgatgcgct 
     3301 gtaatatcat ccataccgcg gggcatcata gtaaaacgat gccgaggaac ctgctgaaaa 
     3361 ccaataccat tcaattccgg attgaaatca tcaccaaaag agatagacgc caaatccggg 
     3421 tgcagacctt ggaaatatgc aggttcggga acaagcatag caataagcat aaaagtaccg 
     3481 ggttccttag cataataatc aataccggaa tgtcccgaaa aatcgcaata cctatcaaca 
     3541 caagccgcaa gctgacccaa atttgcatcc tcaccggaag ccgaaccgtt agccatagcg 
     3601 cgaacattgg acggatttat agaagcctgc caaacaccaa gaaaatcggg cttattaaca 
     3661 taaggtgccg aagatttaac accccaaaga gtgcgaaaaa catcaccaac acgaccaccg 
     3721 gaaacaaaaa gacgatccat ccagttctga agttttgttt tcaaacgaag ctccggaaca 
     3781 gcaacggaaa agcctgtatc ggtactcgca tctaaagcat tcataacttc aatttcaaca 
     3841 gcaggcgacg aaccttgttt gatgatatta ctaaacaaat cgggagaata aggaacagac 
     3901 aaaaggccgc cataaccctg aataccagca caagccatag cttggacaca attaatagga 
     3961 ataccttcta actggagggt caaagcatca atttctgcac ctacacgtgt ccggtaactt 
     4021 aaagtatcta agtacaaaag aaaatcgtcg ggcttaaaag acgtaaaaac atcagagaag 
     4081 aaaggacgat acaatgattc ttgctgaccg tccggacgaa ctctctgcat ttcaccaaca 
     4141 ccacgagtaa aatacatata tttttcctgc atgttagcga tataataata atgcgaaaga 
     4201 aaataagcga agaatggagc gccattaaat ttaaaagagg gaggataaaa ctgaccacga 
     4261 acaccggcga cggacggtag ctttatacct aaattaggac aaacagcacc gggagcaata 
     4321 ccaagccaat cccaaagacc tccacgacca atatgagtag gctggccatc atcgccagta 
     4381 ctatttaatt catcagaaac ccaagattca taaatcttcg cccgatccgc attcaattcc 
     4441 aaaccaaaag taagacgacg aacacgacga gcaatttgaa atgcagggtc tatataatta 
     4501 cctatattag gaccagcaag cggaaaataa accttaccga actttgtata ctcatcaggt 
     4561 tcgtaacgac gaccgttacg catccatcca taaatagcag aatccggggt aaaagtagcg 
     4621 atagtaataa gcttaaaacc attcataaga gggcctaaca taggctgaga ctgcaaaagc 
     4681 gaatcaatac gaccacgaat acgttcacca acattcaaat gacgatgatg aaccggaaca 
     4741 gccaggcccg gatgaatagt gccataagaa ggagcaacgc gactatgtat agcgcgcggg 
     4801 gtctgatttt cataatcaga cggaatacga tactttggca ttatttaaat tctttgtttt 
     4861 tatccatgtt tttcttaaat ctattaaaag aagaaacacg ttcagtgtgg ggtaggggaa 
     4921 gtgcaggagt aagaccggaa gtaatatttt gattcaaagt agaacgacgc atttcatcac 
     4981 gttccaattt actactaaac ttctgacctt gccaactaaa ctcaacagga ggattaataa 
     5041 aacgatcaag aacaatgttt tgcttatcaa catcagaaaa tattttatta taataatacc 
     5101 gtggcatagc ctgctgaaag ccattcaaga ccataaaagg ctggtaatgc tgattaccta 
     5161 atttatgcaa aacggcttcc tcggtatcaa gataattaga accaatacca aaagaagaga 
     5221 tgatacgcgg acgtacctta tcaccattga tagacttcgt aacatatttg gtaatatacg 
     5281 aacacgtttc ttcagaaaca tatccaacga aaacaaaacc gtatttccaa cgagaagcca 
     5341 gtagaggatg atgaccgggc acatccggac tatatccatc tatcaaagtt tgaggaacat 
     5401 caaaaagaat accatgataa tgcggacgac cataaagagt accaaactca cagacaaacc 
     5461 aatgccgaat ttgtttacta taatccttac gaagacgatc caaaaacaat ctgacagcct 
     5521 tatttgtgtc tttcgaaaac ttctttaagt tatcgtcatc aaaggttaaa gtaacaaata 
     5581 ggcaagtgcc gggcgga 
//
