FEATURES             Location/Qualifiers
     gene            120..1733
                     /locus_tag="Alpa_01"
     CDS             120..1733
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VTNRYTHETLFVRCGTCPSCLVHRSNIQCALISNMSSHFKHAYFFTLTYSDEFVPRVSLEVVERCDAESEIDAYMSDSDPRHLPYDDSRYQIAATYLPRSGCFRVHDSGRVRDFSETEDSYQFLHTFSGKEIRDLLVSSNGRYDFSRKCVVFPSIDECRNEILVLNPYDQNLFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGYVASYINSFVDLPDFFNRHKEIKPKSYHSKGLSVNSLFSRTSDISQVDEVAASCFDGFSVPINGEYVTVKPSRSYEHTVFPRISDPFFKDPHSCVDLFFGAFTASNRLIRDGYISIDENLSVWQLSRRYAEYYFSVRAGHYNVSYYDSLIFKFTRLETDQIDFDCITGKIYRFFSAVSRTLRFWHLDCYVLPEDLKKSLLKLFISSVDYWSKKELKFINDFYDYLSAHPESDSFLKSRTVGFVCPPKENISFWNDLNTTLSSLKNSVTQRIFQKVKHKNYNDISGLLFNLNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1736..3628
                     /locus_tag="Alpa_02"
     CDS             1736..3628
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MAHFTGLKQLQNHPHRSGFDIGAKNVFSAKCGELLPVYWDLGIPGCTYDIDIQYFTRTRPVQTAAYTRIREYFDFYAVPIDLIWKSFDASVIQMGETAPVQAKDILTALTVSGDLPYCSLSDLGLSCFFASGSMSVPSLKSWQANNAYANIFGYIRGDVNYKLIHMLNYGNIIPNNMPALNIGNSNYRWWNREAPLASDSLIVYSQMYNFNMNVNLFPLATYQKIYQDFFRWSQWEKADPTSYNFDWYQGSGNLFGGTIDTSLPASSDYWKRDNLFSLRYCNWNKDLFMGVLPNSQFGDIAVIDIEGGLNIPASRISLSSNNRPTIGIKVGAQVSSPNNCSITNSSGNLSTGDILSVGIPAASYKLQSSFNVLALRQAESLQKYREITQSVDTNYRDQIKAHFGVNVPASDSHMAQYIGGIARNLDISEVVNNNLQGDGEAVIYGKGVGTGTGSMRYTTGSKYCILMCIYHCMPVLDYDISGQHPQLLATSVDELPIPEFDNIGMEGVPLVQLVNSNLYKTNKSVKIDSILGYNPRYYAWKSNIDRIHGAFTTTLQDWVSPVDDSFLYSTFGTPSSGSFVTWPFFKVNPNTLDNIFAVKSDSTWESDQFLVNSYVGCKVVRPLSRDGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3635..4150
                     /locus_tag="Alpa_03"
     CDS             3635..4150
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MIMKEKKELCFGCGFREFTPTREISTFPSTRIGEISLEVDPVEQFRFETETFGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRFLDSKSPRSSSLQEQLDKLNPSDDELLSMVKSRHLQHPSEILAWIDSINELAEDMRSEALKQTAENESTKFDSSGSDVSGAESVPVQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4125..5222
                     /locus_tag="Alpa_04"
     CDS             4125..5222
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VLNQFLSSDGYDIAIVPALIGAIGAIGAAGFGAAANNKNVAQNQMNNDFNAREAQKARDFQLEMWNRQNEYNSPANQRKLRAEAGYNPYLGYDSNTGVAGSTGSTSQAQAASPLSLNPEVYSELGSQLGRAGQMIYQERESNARTKALQGDADVARAQALQVFSNVDWGKLSPDYKKWMRETGLQRAQLDYDTNKQNLQNLRWSNLIQMAERTNLLLSANTKRTLNKYLDQSEQTRINVMAAQYYDLMAAGHLKYQQCKESIAKQILYSKQGSWYDSMANKNNLDYRNALALADDYIAAMSTQYESQTAYNMGFGQKAQEAGRRDAESKSFKSLIDRWNYNKRYYEEGLNTLQVVANAIGSIRGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5356..5571
                     /locus_tag="Alpa_05"
     CDS             5356..5571
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKENFYFVLYLGTSVLNVYAGSQSNARAYFRRWIEKNLPVYYHESDFWFLRYECFSDFLASRYPVKFDLKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 20 and 21 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            6211..6417
                     /locus_tag="Alpa_06"
     CDS             6211..6417
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MRITPQQWIEIVKLISTFIIGVITTLFVQSCTISMSVSKNNQNSTQKTEQTSTSSIDSTKININPKNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tgtcggacgt tcgagaaaag aggctattaa ccgataaccc tttggagtgg taggatttag 
       61 gcttaatttc tttgtgtcgg ttaaaaaaat ctggtaaatc gacaaaacta ttaatatagg 
      121 tgactaatag atacactcat gaaacactgt ttgttcgttg tggtacgtgt ccgtcatgcc 
      181 ttgttcatcg ttctaatatc caatgtgctt taatatcaaa catgtcgtct cattttaagc 
      241 atgcctactt ttttacgctt acttattcgg atgagttcgt ccctcgtgta tctcttgagg 
      301 ttgtagaaag gtgtgatgct gaaagtgaga ttgacgctta tatgtccgat tctgacccta 
      361 gacatttacc ctatgatgat tctagatatc aaatagcagc tacttattta ccccgttctg 
      421 gctgttttcg cgttcacgac tccggtcgtg ttcgcgattt ttcagaaaca gaggattcat 
      481 atcagtttct tcatactttt tccggcaagg aaatacgtga tttgttggta tcttctaacg 
      541 gtcgttatga tttttcacgc aaatgtgttg tttttccttc tattgatgaa tgtcgtaatg 
      601 aaattttggt tttgaatcct tatgatcaga atttattttt taaacgttta cgtaaattaa 
      661 tatcagagag atacgatgaa aaaatatgtt actaccttgt atcagagtat ggtggacgga 
      721 catatcgtcc gcattggcat ggtatattat tctttaactc ggacgcactc acctcgtcta 
      781 tatgtgagtt ggtatctaag agttggagtt acggtcgtac agattgttca ctctcgagag 
      841 gttccgcagc tggttatgtt gcgtcatata ttaatagttt tgtcgattta ccagattttt 
      901 ttaaccgaca caaagaaatt aagcctaaat cctaccactc caaagggtta tcggttaata 
      961 gcctcttttc tcgaacgtcc gacatttcac aagtggacga agttgccgct tcgtgttttg 
     1021 atggattcag tgttccgatt aatggtgaat atgtcactgt caaaccttca cggtcgtatg 
     1081 aacatacagt attccccaga atctctgacc ctttttttaa ggatccacac agctgtgttg 
     1141 acttattttt cggtgcgttc acagcgtcca acaggctcat acgtgacgga tatatatcaa 
     1201 tagatgagaa cctctctgtt tggcagctat ctaggcgtta tgcagagtat tatttcagtg 
     1261 ttcgagctgg tcattataat gtttcttatt atgattcttt aattttcaag tttacccgtt 
     1321 tggaaactga ccaaattgat tttgattgca ttactggtaa aatttatcgg tttttttctg 
     1381 ccgttagtcg tactcttcgt ttttggcatc tcgactgcta tgttttacct gaagatttaa 
     1441 agaagtcttt actcaagttg tttatttctt ctgttgatta ttggtctaaa aaggaattga 
     1501 aatttatcaa tgatttttat gattatcttt ctgctcatcc tgaatcagat tcttttttga 
     1561 aatccaggac tgttggtttt gtttgtcctc caaaagagaa tatttcattt tggaatgatt 
     1621 taaatactac cttgtcctct ttgaaaaatt ctgttactca acgtattttt cagaaagtta 
     1681 aacataagaa ttataatgat atatcaggtt tattgtttaa tttaaatttt taattatggc 
     1741 tcattttaca ggtttaaaac agctccagaa tcatcctcat cgttccggtt tcgatattgg 
     1801 agctaagaat gtgttttctg cgaagtgtgg tgaacttctt cctgtttatt gggatttagg 
     1861 tattcctggt tgtacgtacg atattgatat tcagtatttt actcgtactc gtccggttca 
     1921 aactgccgct tatactcgta ttcgtgagta tttcgatttt tacgctgttc ctattgattt 
     1981 gatctggaag tcatttgacg cttctgttat tcaaatgggt gagacagctc ctgttcaagc 
     2041 taaggatatt ttgactgcgt tgactgtttc cggagatttg ccttattgtt ctctatcaga 
     2101 tttaggtcta tcttgttttt tcgcttctgg ttctatgtct gtccctagct tgaaatcttg 
     2161 gcaggcgaat aatgcttatg ctaatatttt tggttatatt cgtggagatg taaattataa 
     2221 gcttattcat atgttaaatt atgggaatat tattcctaat aatatgcctg ctctaaacat 
     2281 cggtaattct aattatcgtt ggtggaatcg agaagctcct cttgcttccg attctcttat 
     2341 tgtttatagc cagatgtata attttaacat gaatgtcaat cttttccctc ttgctactta 
     2401 tcagaagatt taccaagatt tcttccgttg gtctcaatgg gaaaaggctg atcctacttc 
     2461 ttataatttt gactggtacc agggttctgg aaatttattt ggtggtacta ttgatacttc 
     2521 tcttcctgct agttccgatt attggaaacg agataattta ttttctcttc gttattgcaa 
     2581 ctggaataag gatttattta tgggagttct tcctaattcc cagtttggag atattgcagt 
     2641 aattgatatt gaaggaggtc ttaatattcc cgcttctcgt atttctttat cctctaacaa 
     2701 ccgtcctact attggtatca aggtaggcgc gcaagtttct tctcctaata attgttcaat 
     2761 tactaattct tcaggtaatt tgtcaactgg tgatattttg tctgttggca ttcctgcagc 
     2821 ttcttataag ctgcaatctt cgtttaacgt tcttgctctt cgtcaggcag aatctttgca 
     2881 gaagtatcgt gaaattactc aatctgttga taccaattat cgtgaccaga ttaaagctca 
     2941 ttttggcgtt aatgttcctg cttctgattc tcacatggcg cagtatattg gtggtattgc 
     3001 tcgaaatctt gatatttccg aggttgtaaa taacaacttg caaggtgatg gtgaagctgt 
     3061 catctacggt aaaggtgtgg gtactggaac cggttctatg cgttatacta caggttccaa 
     3121 atattgtatt ttgatgtgta tttaccattg catgcctgtt cttgattatg atatttccgg 
     3181 ccagcatcct caacttttgg ctacttctgt agatgagctt cctattcctg aattcgataa 
     3241 tattggtatg gaaggtgtac ctcttgttca gttggttaat tccaatttgt ataagactaa 
     3301 taagtctgta aagattgatt ctattctagg ttataatcct cgttattatg cttggaagtc 
     3361 taatatagac cgtattcatg gtgcatttac tacgactctt caggattggg tttctcctgt 
     3421 tgatgactct ttcctgtata gtacgtttgg tactccttct tctggttctt ttgtcacctg 
     3481 gcctttcttc aaggttaatc ctaatacttt ggacaacatt tttgccgtta agtctgattc 
     3541 tacttgggag agtgatcaat ttttggttaa ttcttatgtt ggatgtaagg ttgttcgtcc 
     3601 attgtcgcgt gatggtgttc cttattaaat ttatatgatt atgaaagaga aaaaagaact 
     3661 ttgttttgga tgtgggtttc gtgaatttac ccctactcgt gagatttcta ctttcccctc 
     3721 tactcgtatt ggtgagattt ctcttgaagt tgaccctgtt gaacaatttc gttttgagac 
     3781 agagactttt ggcgaatctg tttcttatcg tcttcgctct gatgtgagca tgttacttca 
     3841 tgctgccgac cttgctaagc gtgccggtgt ttctaccgtt caacgatttt tggattctaa 
     3901 gagtccccgt tcttcttctt tacaagaaca attggacaaa ttgaaccctt ctgatgatga 
     3961 gttgttgtcg atggttaaat ctcgtcattt gcaacaccct agtgagattc ttgcttggat 
     4021 tgattctatt aatgaacttg ccgaggatat gagatccgaa gctcttaaac agactgccga 
     4081 aaatgaaagc actaaatttg attcttctgg ttctgatgtc agtggtgctg aatcagttcc 
     4141 tgtccagtga tggctatgat atagctattg ttcctgctct tattggtgct attggtgcta 
     4201 ttggtgctgc cggatttggt gctgctgcta ataataagaa cgttgcacaa aatcagatga 
     4261 ataatgattt taatgctcgt gaagcccaga aagctcgtga ttttcagctt gagatgtgga 
     4321 atagacagaa tgagtataat tctcctgcta atcagcgtaa attgcgcgct gaagctggat 
     4381 ataatcctta tctgggttat gattcgaata ccggagttgc tggttctacc ggtagtactt 
     4441 ctcaagctca agccgcttct cctctctcct tgaatcctga agtttattcc gagcttggtt 
     4501 ctcaacttgg tcgagccggc caaatgattt accaggaacg agaatctaat gctcgtacta 
     4561 aggctttaca aggagatgca gatgtagcac gtgctcaagc tcttcaggta ttttctaatg 
     4621 ttgactgggg aaaactttcc ccagattata aaaaatggat gcgagagact ggtttacagc 
     4681 gtgctcaact tgattatgat accaataagc agaatcttca aaatttgcgt tggtctaatt 
     4741 tgattcagat ggccgagcgt acgaatttgt tgctatctgc taatactaag cgtactttga 
     4801 acaagtatct tgatcagtct gaacagactc gtattaatgt gatggctgcc caatattatg 
     4861 atctgatggc cgcaggacat ttgaaatacc agcaatgtaa ggaatccatt gctaaacaga 
     4921 ttctatactc taagcaaggt tcttggtatg actctatggc taataagaat aatcttgatt 
     4981 atcgtaatgc tcttgccctt gctgatgatt atattgctgc tatgagtact caatatgaat 
     5041 cgcaaacggc ttataatatg ggcttcggcc aaaaagccca ggaagccgga aggcgtgacg 
     5101 ctgaatctaa gtcctttaaa tctcttattg accgctggaa ttataataaa cgttattatg 
     5161 aagaaggttt aaatactctt caagttgttg ccaatgctat tggatctatt cgtggtcgtt 
     5221 agtcggtagt atctttatcc tcccgcgtag cgggaggatt ttttttttgc ttttttttaa 
     5281 catcttttaa tcattataat ttgttataat aactatttat tattatcttt atatatcatt 
     5341 taaaagttaa tagtcatgaa ggaaaatttt tattttgtgc tgtatttagg aacctctgtt 
     5401 cttaacgttt atgctggctc tcaatctaat gcccgtgctt attttcgtcg ttggatcgag 
     5461 aagaacttac cggtctatta ccatgagtct gacttctggt ttcttcgtta tgagtgcttc 
     5521 tctgatttct tagcctcccg atatccggtg aagtttgatc ttaaattgta gcttcacggc 
     5581 ctgcgtggcc tgaacgcaaa ttgggtaaca ggggcttttt taagccccct taacgactag 
     5641 taccttatta tcggcgaagc cgcactccac gcgcgaagcg tgggagatcc gtcaatcttc 
     5701 taatctattt gttaaggtag ccgcccgtct gtcttaacca tacctcacct tccccatata 
     5761 caccaaggcc gcccggcccg aggtgctaaa catagatcca ttcaatgtta acacctacca 
     5821 gctgcaggac gtgccgttgc gcagcttccc ccacgaggaa cacagcccca tgcgagcgta 
     5881 gctatgcatg gaagatgtgt tcctcgttct tgttaaagtg ttgtgctata tttattattt 
     5941 gtttattttt tttactattt tatattatta tagcacatac ctgcgcccga agggcggaac 
     6001 ggttcggtat cgctgccccc tagttcattt tattggcgaa gcctatttaa ttttttcccg 
     6061 aagggctttg aatttacctt attcaaagct cttatccctt gtctttcttt tgaaaaatta 
     6121 cactgcctct aaagaaaata ctattttatt tggttattat gatttttatt tctatcattg 
     6181 tggtgttgtt taactcaaac ctgttttgtt atgagaatta ctcctcaaca atggattgaa 
     6241 attgtaaaat taatttcaac gtttattatt ggtgttatta ccactttgtt tgtgcagtcc 
     6301 tgtaccattt ctatgtctgt ttcaaagaat aatcaaaact cgacgcagaa aaccgaacag 
     6361 acttctacgt cgtctattga ttctactaaa attaatatta accctaaaaa tttttaaatt 
     6421 atggaaatgt atttgatttc ttatcagaag caaggctctg cccctgttgt ttatgttgct 
     6481 agtgacaata atcttatggc tacggttaac caggctctga aagagtctga aggtgcgcct 
     6541 gtattggttt ca 
//
