FEATURES             Location/Qualifiers
     gene            149..397
                     /locus_tag="Alpa_01"
     CDS             149..397
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="LLAYRFRAYEAVYNAYYRDIRNNPFVVNGRPVYNKWLATMKGGADKTPYELHQCNWERDFLTTAVPNPQQSANAPLCWSYCR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65712.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            366..1391
                     /locus_tag="Alpa_02"
     CDS             366..1391
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MLLFVGLTVGDVVTRADDGTYSIQKQTVLVDEDGSKYGVSYKVSEDGERLVGVDYDPVSEKTPVTAINSYAELAALATEQGSGFTIETLRYVNAYQKFLELNMRKGFSYKQIMQGRWDIDIRFDELLMPEFIGGISRELSMRTVEQTIDQQGADSQGQYAEALGSKTGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPVYTQLLPKDFVYNGLLDHYQPEFDRIGFQPITYKEICPMNIVGDDDTEQLSKTFGYQRPWYEYVAKYDSAHGLFRKDMKNFIMSRVFKGLPQLGQQFLLVDSDTVNQVFSVTEYTDKIFGYVKFNATARLPISRVAIPRLD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 16 and 17 "
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65712.1"
                     /inference="similar to AA sequence:INSD:WP_024568106.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1667..1990
                     /locus_tag="Alpa_03"
     CDS             1667..1990
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MARNTKPDYKSVECNFDVRKDFERTKPNLGLTPQQVADMAKRGIPVSPMNVNFIDVNGDASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1993..3144
                     /locus_tag="Alpa_04"
     CDS             1993..3144
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MADIGKGAASGASLGSAISPGLGTVIGGIGGAAISAIGSFFGNKSNRKLSKEAFERESKFAREERLAQQQWIEQMYEKNNSYNSPAAQMQRLKEAGLNPDLMYSRGDVGNATAPEAPQQAATPRYNVIPANTYGQTAQIAADAGLKAAQARLASSESKKTDTEESLLTADYLLRKARTESDIELNSSTIYVNHELGQLNHAEAEVAAKKLQEIDVAMSEARERISTLKAQQSQIDENLVQMKFDRFLRSKEFELLCKKTYQDMKESNSRLTLNAAEVQDMMATQLARVMNLNASTYMQKKQGLLASEQTMTELYKQTGIDISNQHAKFNFDQAKNWDSTERFTNVATTWINSISCAVGQFTGSASDLKQAGFLSPPRNKAGFR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:CDL65715.1"
                     /inference="similar to AA sequence:INSD:WP_024568108.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gttctagccg gcaatgtctt cttctgctac tattgagttt acaggtatga gttttaatgc 
       61 actgactcga gttattatca gcttacaaaa ttgacgtaaa ttatactaag tatcctttgc 
      121 gaccgaagga catccggatc gcactcgttt gcttgcttat cgtttccgcg cttacgaggc 
      181 tgtgtataat gcttattatc gtgatatacg taacaatcca tttgtggtta acggtcgtcc 
      241 agtttataat aaatggcttg ctaccatgaa aggcggtgcc gataaaactc cgtatgaact 
      301 tcatcaatgt aattgggagc gtgatttctt gactactgcc gttccgaatc ctcaacaaag 
      361 tgcgaatgct cctctttgtt ggtcttactg tcggtgatgt tgttactcgt gctgacgatg 
      421 gaacttactc tattcaaaaa caaaccgttc ttgtcgatga ggatggttca aaatatggag 
      481 tttcatataa agtttctgaa gacggtgaac gtcttgttgg cgttgattat gaccctgttt 
      541 cggaaaaaac tcctgttacc gctattaatt cttacgctga gttagctgct cttgctaccg 
      601 aacagggttc aggctttacc attgaaactc tccgttatgt aaacgcttac caaaaatttc 
      661 ttgaactcaa tatgcgtaaa ggcttttctt acaagcagat tatgcaaggt cgttgggata 
      721 ttgacattcg ttttgacgaa cttcttatgc ccgagttcat tggtggtatt tcccgtgagt 
      781 tgtctatgcg tacagttgag cagaccatag accagcaagg tgctgactct caaggacaat 
      841 acgctgaagc attaggttct aaaaccggaa tagctggtgt atatggtagc acgtctaata 
      901 atattgaggt tttttgtgac gaagagtctt atataatagg cttgcttact gttacacctg 
      961 tgcccgttta tacacagttg cttcctaaag atttcgttta taatggcttg ttggaccact 
     1021 atcagccgga atttgaccgt attggattcc agcccatcac atataaggaa atatgtccaa 
     1081 tgaatattgt aggagatgat gataccgaac agttaagtaa aacgtttggc tatcaacgtc 
     1141 catggtatga gtatgttgca aaatatgata gtgcgcacgg tctattcaga aaagatatga 
     1201 aaaacttcat tatgtcccgt gtctttaaag gacttccgca gcttggacaa caatttttgc 
     1261 tcgtggactc cgatacggtt aatcaagtat ttagcgttac ggagtacacg gataagattt 
     1321 tcggatacgt caagtttaat gctaccgccc gattaccaat cagtcgtgtt gcaatacctc 
     1381 gtctagatta agaaaatagt tttttctttt tttcttccga tgctgcattt ttcaggcatg 
     1441 cgtgcgtgac ttgcttcaag ggttctagta gtaataattg ttaaatatta gaaccctgtt 
     1501 ataatattta atcaattatt agtactaggt tcattgaact tgtcgcgtac gtatacctat 
     1561 tttcgcagtt tcgtaagatt aaaagggaaa agtattttcc ctctgcgtga aacgcaagtt 
     1621 aatagcaact ttgttgcgta atataaactt tttaaatttt acaattatgg ctagaaatac 
     1681 aaaaccggat tacaaatctg ttgagtgtaa ttttgatgta cgaaaagatt ttgagagaac 
     1741 caaacctaat ctaggcttaa ctcctcaaca agtagcagac atggcgaagc gtggcatacc 
     1801 tgtttcgccg atgaacgtaa attttattga cgttaacggt gatgcttctt ggaatataga 
     1861 gcctcaattc cgtcgtgata tggacatggc taccgcttgg gaaatggaaa aggcttccca 
     1921 acgcaaagcc cttcaagttc ttcgtcagaa gaaatttgga gacaaataca ttaaccctca 
     1981 aaacaactga ttatggcaga tattggaaaa ggtgccgctt ctggtgcttc tcttggttcc 
     2041 gctatttctc caggtctagg tacagtaatt ggcggcatcg gtggtgccgc catctctgct 
     2101 attggtagtt tttttggaaa caaaagtaac cgcaaattgt ctaaagaagc attcgagcgt 
     2161 gaaagtaaat ttgctcgtga agaacgtctt gcacaacaac aatggattga acaaatgtat 
     2221 gagaaaaata actcatacaa ttcgcctgct gcgcaaatgc aacgtttgaa agaagccgga 
     2281 ttaaatcccg acttgatgta ttctcgtggc gacgtaggca atgcgactgc tcccgaagct 
     2341 ccacagcaag ctgcgacgcc tcgatacaat gtgattcctg cgaatactta cggacaaact 
     2401 gcgcaaattg ctgctgatgc tggattaaaa gctgctcaag ctcggcttgc ttcttccgaa 
     2461 agtaagaaaa cagatactga agaaagcttg cttacagctg attacctgct ccgtaaagct 
     2521 cgtacggaaa gtgacattga gcttaacagc tcaactatct acgtaaatca cgagctagga 
     2581 caattgaatc atgccgaggc tgaagtagct gcaaagaaac ttcaggaaat agacgttgct 
     2641 atgtccgaag ctcgcgaacg tataagtact ttgaaagctc aacagtccca aatagacgag 
     2701 aacttagttc agatgaagtt tgataggttt ttacgctcta aagagtttga actcctctgt 
     2761 aaaaagacat atcaggacat gaaagagagc aattctcgcc ttactcttaa cgctgctgaa 
     2821 gtacaagata tgatggctac gcaattggct cgtgtgatga atctgaatgc ctctacgtac 
     2881 atgcaaaaga aacaaggtct gttagctagt gaacagacta tgacagagtt gtataaacaa 
     2941 actggtattg atatctcgaa tcagcatgct aaattcaact ttgaccaggc taaaaactgg 
     3001 gactcaaccg aacggttcac taacgttgct actacgtgga ttaatagtat atcttgtgca 
     3061 gttggtcagt ttaccggctc tgcttctgac ttgaaacagg ctggatttct tagtcctcca 
     3121 aggaataaag ctggttttag ataatgactg gagcggtgtc cccgctcctt tcacgattta 
     3181 ttctaaaatc gtaccgcctt aactcgataa gtatgtagta actgacacac cttctaatct 
     3241 tggattattt ccaccggaaa agttacgatt tgccctaagt gcggctcccg tccgctaaaa 
     3301 ctgtttatta tgaataatat ctattgcgaa aacccgaaag taatttggca tcctcacgct 
     3361 tctaaattgg ttcaaaagta ccgtaccttt acaatgccgt ccggtaccta tcacggttcc 
     3421 gtgctccatg taaataaaaa tcatgttaat aaaaataaca ttgataaata cacgattgtt 
     3481 aaccctgtta ctggtgaaac atttcctatg tttctgattg ttccttgtca caaatgtcct 
     3541 ctgtgcaatg agaagaaagc ccagcaatgg tcatttcgtg ctctctgtga atcctataca 
     3601 tctaataaac aagcttattt tattactctt acttataata atgaacactt accgaaaaat 
     3661 ggagtcttcc ccgaagaaat tcaactcttc ttcaagcgcc ttcgcactaa actggataga 
     3721 cgtggtattt ctcataacct tcgctatatt gcagtctctg aatacggaca ttggtctaaa 
     3781 cgtcctcact atcatattat attatggaat ttccctgata acttcgactc ggcatacgcg 
     3841 aggcttacac tcattgaaag ctgctggtgt cgtcctactg gtgagtacaa ttctgacgga 
     3901 tcacctgtta ctaggtctat tggttttgct tattgtttac ctgttattga cggtggtatc 
     3961 aattatgtca tgaaatatat gggaaaacgt gaaaaatctc ccgaaggaat gaaccctacg 
     4021 tttatgctcg cttcccggaa aaatggtggt attggttctg cctatgctga acagctccgt 
     4081 ccgttctatg aacagcaacc cgatacatgt gatatgtctg ttattaatat atataccgga 
     4141 caatctctta ctaccatgct tcctcgatat tatcgtatga agtatatgcc ttcaacttca 
     4201 atgtgttatg accctaattt tatcaaatat tttaaagata ctgtccgttg gtttgaagtt 
     4261 gctcgttatc ttcataggca atataagttg ccatttaagt ttacttatcc cgaagagtat 
     4321 cttcgtctcg ttcgtatgac tggtaaaact ccttactata atccttacaa aaccattgtt 
     4381 aatgatacat ttataaggtc ttatcttcct caatttacgt cccagactgt ttatgaggat 
     4441 ttatattata aatcatttag ttacgctctt gattgcctgg ctactgctct tgtgttcttt 
     4501 gattcgtctc aagtcctgaa gcatgaaaaa tctttacaaa tgaatgtttt 
//
