FEATURES             Location/Qualifiers
     gene            complement(10..1059)
                     /locus_tag="Alpa_01"
     CDS             complement(10..1059)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MAFKDFASGLFGGLGSVISGAIGAKTTADTNKTNLKIAQMNNDFNAREAQKARDFQLDMWNKENEYNSASSQRERLENAGYNPYMNEAQAGTATGMSGTSAASAAGAAPQIPYTPDFQSVGVNLASALKMMSEKKKTDIENLNMSDLLRSQIWQNLGATDWRNASPEARAYNLSQGRRAAELGMASLEENLSNQRWSNNLLVANIANSLLDADTKTILNKYLDQQQQAELNVKAANYEYLVMSGQLKRQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGADAFHDSSILRSRAGSASESYKQSAFDTKLQPWREALNSTNMIF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 23 and 24 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /inference="similar to AA sequence:INSD:WP_007558289.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1062..1523)
                     /locus_tag="Alpa_02"
     CDS             complement(1062..1523)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKKKEYIDHIFNGSFDVLHTKVPVQDKLMQLSTFVNKDGSIAISSDISLIFNQQRLENKLTASELREYIQRYTPNKSVYTSQLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSLIKDAEEKARVAAEENAAAEGNAAAGASSSSASSTSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1526..3322)
                     /locus_tag="Alpa_03"
     CDS             complement(1526..3322)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MSLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVNTSAYTRIREYYDWFWVPLHLLWRHAPEVISQMQSNVQHAGSQTSSLTLGNYLPTISSSQLSAVCSRLFGKKNYFGYDRSDLSYKLMQYLRVGNSGQVSVNFGTSLPASDTSYTQAYRFNLDLSLFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGVSSHLFSSLPVSSDPYWNNNTLFDLEYCNWNKDMFMGVFPDTQFGDVATIGITSDSPESSLQLKAWASGSPSSKAPVVVGAAASSPNFTIRAESGNMNPANILGVDTSSLSLAGSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVDVGENMSGMSTYVGGDSSSLDISEVVNTNLQSGDVASEAVIAGKGVGSSQGSEKFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITSVIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKVVRNLDYSGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3326..3529)
                     /locus_tag="Alpa_04"
     CDS             complement(3326..3529)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKITPQQWIEVVKLISTFIIGLITALCIHSCTASMSVFWKNSNSNQESQQTTRQSVDSTRIDVQPNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3544..5307)
                     /locus_tag="Alpa_05"
     CDS             complement(3544..5307)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MADKVRNFFNRCEHPRIIKNKYTGEPVYVECGSCPHCLISRSDAKRNLCDYEKWNRKYCYFVTLTYNSQYVPKMALVPITDYEFDYPIGKNWPCVKTQLHMRLMLDPRVKKTEMFSQETRMRARRPVGDSLINMFTCKVNKPYIDEHLKAIFDSCAAAVEFRKNYKPTYQSPARPYILRTIPRISKLQKFNDVQREELVWLSPEKVEMLKKKSKCEGDNNAFPQFKGLLKYINYRDYQLFAKRFRKYLFTRIGSYEKISSYVVSEYSPKTFRPHFHILFFFDSDEVAKNIRQAVFQSWKLGRVDTQLARDSAGSYVSGYLNSVVSLPGIFTDVSFTKNKSRFSKLFGYESFRQTIKTPEQAIERLSERILFVRNGKPCEFTPPFSYISRLLPRFVPYSSNFVVETRTVLRSIRGVLQLFRRNEPFKKETPTNISEFVHTYTVTLYEKYGYCYDTLPECLRVYLSYTRSVKEIHYFTDKLKNKLCRPLYIYRIWESLGLSDDCIISLSDEYMSRCRSMSLEKQLSIQQEMFEREGYSDELLSLFYINKPQKKVNNRYFQEWKDKNYYEVHYIRVKHKKLNDENNVFLE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bctoNOG24068"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5546..5734)
                     /locus_tag="Alpa_06"
     CDS             complement(5546..5734)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VQPKDGGKPSNPMLVNANGSDLCCLVGEFLCTGDKVLIFQSVTEYKATPCETDPCVESFKKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5840..6046)
                     /locus_tag="Alpa_07"
     CDS             complement(5840..6046)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MEKKLRFVNVVACSNLGTRIRLTLSSETDDLRQLVADALIRIGQYGSSQETFLVQHIDSAPPLYDMRE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(6049..6234)
                     /locus_tag="Alpa_08"
     CDS             complement(6049..6234)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MIMKTERKFTWCVRFYNVKTGAIDYLMYFDWSARAINEFITDFVDSNKDYVVRAFKQYKKF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ccaataccgt taaaaaatca tattagtaga attaagagcc tcacgccacg gctgcaactt 
       61 cgtatcaaag gcagattgct tgtaagactc agaagcagaa ccagccctag aacgcaatat 
      121 agacgaatca tgaaatgcat cagcaccagc attaaatgct cgactgtggt aatacgagcc 
      181 aaaataaaaa ttagtattat tagtagcacg aatcaaaccg tccgaagtct cacgcaaaat 
      241 acgattctga agattatacc cattagcacg cgcataagtc tcaatctcct cagcaataag 
      301 attattgact tcttgcctct tcagttgacc agacataaca agatattcat aattagccgc 
      361 cttaacattt aattcagcct gttgttgttg atcaagatac ttattcaaaa tagtcttcgt 
      421 atcagcatca agaagagaat tcgcaatatt agcgacaaga agattattac tccaacgctg 
      481 gttagacaaa ttttcttcga gggaagccat gccaagctcg gcagccctac gaccttgaga 
      541 aagattatac gcacgcgcct caggagacgc attacgccaa tcagtggcac caagattttg 
      601 ccaaatttga gaacgtagca aatcagacat attaagattc tcaatatcag tctttttctt 
      661 ttcactcatc attttcaacg cagaagccaa attaacacca acagattgaa aatcaggagt 
      721 atatgggatt tgaggagcag caccagcagc agatgcagca gaagtgccag acataccagt 
      781 agccgtacca gcctgagcct cattcatata aggattataa ccagcattct ctagcctctc 
      841 acgctgagag gacgcagaat tatattcatt ttccttattc cacatatcca actgaaaatc 
      901 acgggccttt tgtgcttcac gagcgttaaa atcattattc atttgggcaa tcttaagatt 
      961 ggtcttatta gtatcagccg tagttttagc accaatagca ccagaaatta cagaaccaag 
     1021 accaccaaat aatccgctag caaagtcttt aaatgccata actattcaga tgttgaagat 
     1081 gctgaagaag aagaagcacc agcagcagca tttccttcag cagcagcatt ttcttcagca 
     1141 gcaacacggg ctttttcttc agcgtcttta attaatgaat cataattttc catacaatat 
     1201 tcagcccatg atcgcatttc agacaacgat tgaatatgtc ttgatttaag agtattcaat 
     1261 aaagtgtcat catccaattg ggaagtatat accgacttat taggagtata acgctgaata 
     1321 tattcacgta attcactagc agttaattta ttctccaatc tttgttgatt aaatatcaac 
     1381 gaaatatcac tagaaatagc gatagaaccg tctttattta caaaagtaga caactgcatt 
     1441 aacttatctt gtacaggcac ttttgtatgc aagacatcaa aagaaccgtt aaaaatatga 
     1501 tctatatatt ctttcttttt cataatcaat aaggcattcc ggaataatcc aagttacgaa 
     1561 ctactttaac atcaaaagca caattaatca aaaatgggtc tgtatcccat ttagaattag 
     1621 cattagcctg aaagatacta tcaagtatag aaggattcac cttgaaaaaa ttataattaa 
     1681 atgaaccaga ggaagaagtc aaaccgatca acatacgttt ccaaataacg gaagtaatag 
     1741 gcgcaaccca ttctttctca gtagtagtaa atgcacctag cacataatca tacgaagttt 
     1801 tccaagaata ataacgaggc aaataaccca tagtaaaatc ggcggaagaa aatccagtaa 
     1861 ccaattcttt atcagaatta gaatacatag aaaccggtac agactgcata ccaatagaat 
     1921 caagttcagg aataggcaaa tccgtattct gagtaacaaa aaattgtggg tcaggagctg 
     1981 aagagacata atccaataaa gggacattat gataaataca catcaataca ccccaatcac 
     2041 gagcctcaaa tttttcagaa ccttgcgaag agccaacacc cttaccagca ataacagcct 
     2101 cagaagcaac atcgccagac tgaagattcg tattaacgac ctcggaaata tcaagtgaag 
     2161 aagaatcacc accgacataa gtagacatac ctgacatatt ttcaccaaca tcaacgccga 
     2221 aatgagcttt aatctgtgca cggtaattct gtggaacatt caaagagatc tccttccaac 
     2281 gctgaagagc ctcaccacga cgaagagcaa gaacatcaaa tgaaccagcc aatgacaaag 
     2341 atgaagtatc aactccaaga atattcgcag gattcatatt acccgactcg gcacgaatag 
     2401 taaaattagg agaagaagca gcagcaccaa caacaacagg agccttacta cttggagaac 
     2461 cagacgccca agccttcaac tgcaaagaag attcaggaga atcactagta ataccaattg 
     2521 ttgctacatc accgaattga gtatccggaa acacacccat aaacatatcc ttgttccaat 
     2581 tacaatactc aagatcaaac aatgtattat tgttccaata gggatcagaa gaaacaggca 
     2641 aagaagaaaa caggtgagaa gaaacaccgg taaaataatc tatattccac aaatacgggg 
     2701 atgaatcttg ccactgagaa taacgaaaat agtcttgaca aaatttctta tatgccaaga 
     2761 acgggaatag actcaagtca agattaaatc ggtaagcctg agtgtaagaa gtatccgaag 
     2821 caggcaaaga agttccaaaa ttaacagaaa cctgaccaga attaccaaca cgaagatatt 
     2881 gcattaactt atacgaaagg tcggaacggt cataaccaaa ataatttttt ttaccaaaaa 
     2941 gacgcgaaca tacagcgcta agttgactag acgaaatagt aggcagataa ttacccaaag 
     3001 ttaacgaaga agtctgcgaa cctgcatgct gaacattaga ttgcatttga gaaataacct 
     3061 caggagcatg gcgccaaaga aggtgcaaag gaacccaaaa ccaatcataa tactcacgaa 
     3121 tacgagtata cgcagaggta ttaacaggct gagtacgagt aaaatgctga cgtttcaatg 
     3181 taaatttatc accaggcatt gtaaaatacc atttaatcgg aagaagttca cccgattttg 
     3241 cagaaaaagc aaccttagac gaaaggtcaa atgccgaacg tctaggatga ttgcgaatgt 
     3301 cttttaacga aaataaactc ataaattaaa aatttggttg aacatcaata cgagtagaat 
     3361 caacagactg acgcgtagtc tgctgactct cttgattaga attactattt ttccagaata 
     3421 cagacataga cgcagtacaa gaatgaatac acaatgccgt aataagacca ataatgaaag 
     3481 tagaaatcaa tttaactact tcaatccatt gttgaggtgt aattttcata actataaaga 
     3541 taattattct agaaatacat tattttcatc atttaatttc ttatgtttaa cgcgaatata 
     3601 atgtacttca tagtaattct tatctttcca ctcctgaaaa taacgattat taactttttt 
     3661 ttgaggttta ttaatataaa acaaagacaa aagttcatcc gaataacctt cacgctcgaa 
     3721 catttcctgc tgaatactca attgtttttc tagggacata gaccgacacc tagacatata 
     3781 ttcatcagat aaagaaataa tgcaatcatc agaaagacca agagattccc aaatacgata 
     3841 tatataaagg ggacggcaaa gtttgttctt aagtttatca gtgaaataat gaatctcttt 
     3901 aacagaacgc gtataagaaa gataaacacg aagacactca gggagagtat cataacaata 
     3961 tccatacttt tcatacaatg tcactgtata ggtgtgaaca aattcggata tgtttgtagg 
     4021 agtttctttt ttaaagggtt catttcgtct aaagagttgt aaaactccac ggattgaacg 
     4081 cagaactgtt cgagtttcga caacaaaatt actgctgtac ggtacgaatc gtggcaataa 
     4141 tctagagata tacgaaaagg ggggagtgaa ttcacaaggc ttgccattac ggacaaagag 
     4201 tattcgctca gataggcgct cgattgcttg ttcaggtgtc ttaattgtct gtcgaaagct 
     4261 ttcatatcca aataatttgc taaaccgcga cttatttttt gtaaatgaga cgtccgtaaa 
     4321 aatgccgggg agagacacaa cgctattaag atagcccgat acgtagctac cggcggaatc 
     4381 ccttgcaagt tgcgtatcga cacgaccgag cttccaactc tgaaatacag cttgtcgaat 
     4441 atttttggcg acttcgtccg agtcgaagaa aaataagata tggaaatgcg ggcggaatgt 
     4501 cttaggagag tactccgaaa caacgtatga agatattttt tcatatgaac caattcttgt 
     4561 aaataaatat ttgcgaaaac gtttcgcaaa aagttgataa tcacgataat ttatatattt 
     4621 aagaagtcct ttaaattgag gaaaggcatt attatctcct tcacattttg acttcttttt 
     4681 aagcatctca accttttcag gggaaagcca aaccaattcc tcacgctgaa catcattaaa 
     4741 tttctgcaac ttagatatac gaggaatagt gcgaagaata taaggacgag caggagactg 
     4801 atacgtaggc ttataattct ttcggaactc aacagcagca gcacaagaat cgaatatagc 
     4861 cttcaaatgt tcatcaatgt aaggtttatt tactttacaa gtaaacatat tgatcagaga 
     4921 atcaccaaca ggacgacgag cacgcatacg agtctcttga gaaaacattt ccgttttctt 
     4981 gacacgagga tcaagcataa gacgcatatg caactgagtc ttaacacaag gccaattctt 
     5041 acctatagga taatcgaatt cataatccgt aataggaaca agtgccattt tcgggacgta 
     5101 ctgcgaatta taagtcaatg tcacaaagta acaatacttg cgattccatt tttcataatc 
     5161 acataaattt cttttcgcat cagaacgcga aatcaaacag tgcggacaag atccacactc 
     5221 aacatataca ggttcacccg tgtacttatt ttttattatg cgaggatgct cacaacgatt 
     5281 gaaaaaatta cgaactttat cagccatata ccgtcgtctt taaattcagg gacgaatact 
     5341 tttactttta atcttatgaa attgcaaaga taggtaaatc gcatagaaaa caccaatcaa 
     5401 cattgtatca aaaattatta aattcacgcg cgcgctacgc aagcttcgca cacacgcgat 
     5461 attaacaatt ttcaatacaa taacgcttgg tgcaatctat acgatttgtc aacgaaatgc 
     5521 aatatcagaa gaagaaaaag aaaaactatt cttttttaaa agattctaca caggggtctg 
     5581 tttcacaggg agtagcctta tattcagtta cagactgaaa aatcaagact ttatcgccag 
     5641 tacaaagaaa ctcgccaaca agacaacaca aatcacttcc attagcatta actaacattg 
     5701 ggttagaagg ttttccgccg tctttcggct gcacagtcac taaaagtttc ataatcataa 
     5761 aattaaaatt taaattgtta gtaatataaa tataataaaa gtaaacccgc gattaagcgc 
     5821 gcgaaatcca cgcggggaac tattctctca tatcgtacaa aggaggtgca gaatctatat 
     5881 gctgaaccaa aaatgtctcc tgagaagaac catattgccc aatcctgata agagcatcag 
     5941 caacaagttg acgaagatcg tcagtctcag aagaaagagt taaccggata cgtgtcccta 
     6001 aattggaaca cgccacaaca ttaacaaatc gaagtttctt ttccataatc aaaatttttt 
     6061 atactgctta aatgcgcgaa caacataatc tttattagaa tcaacgaaat cagtaataaa 
     6121 ttcattaatt gcacgagctg accagtcaaa atacattaaa tagtcaattg cgcctgtctt 
     6181 aacattataa aatcgaacgc accaagtaaa ttttctttct gttttcataa tcatatcttt 
     6241 ttttattaca ctacaaagat aaagggatat aaacaaagaa ccaaattaaa ttatatgtta 
     6301 tacaacatat tttgcatttt tattggtgtc acttttgcca atctcggacg agaagaggtg 
     6361 gaatcgggct agatgtgaca cccgatttgc tagcgcacaa aagagaacag ctattaaaat 
     6421 aaaatgcacc gacttatcac aagtcagtgc atcaagacaa tattaaaata tacaatacga 
     6481 aaacgaaaac aaactatcta ttagagaaat cta 
//
