FEATURES             Location/Qualifiers
     gene            256..459
                     /locus_tag="Alpa_01"
     CDS             256..459
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MYISSIVVVFAPKSPGLEHLSAVSLALDYRVGCTLFHAVEYVSKHPLVKPCLNKYVIASLSFQYSEL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            456..653
                     /locus_tag="Alpa_02"
     CDS             456..653
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKITPQQWIEIVKLISTFIIGVITCLFVQSCTASMSISKYNSNSSQSTEQTSTSSVDSTKISINR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            665..838
                     /locus_tag="Alpa_03"
     CDS             665..838
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MENEFVLVSVKPKNSQSQGQIFVVRRKDISSFVETKLSSDNILLIDSIDTFAISSEQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            841..2541
                     /locus_tag="Alpa_04"
     CDS             841..2541
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MINQEVIDKYLLAECLHPVKVLNKYTNDFIYSPCGHCYSCLKNKSNRDTALAMNIASNFKYCYFVWLSYEDQYLPYMELKSIDSLDNNRSNYFFSSVNRNLRILVPNGKDRIIEDPLFEFTHPMTSFEYQDIIVKSHGRYDFLRKCVVYPRFEDCDNRIPYCNTSDCQKFLKRLRFHSKNKYNEEIRFYGVSEYGPRTYRPHWHLLLFFNSDELTSVIQQFVSESWSYGRTTCELSRGGSSSYVASYVNSNVCLPSLYLQHKEIRARSLHSKGYGNNYVFPTQATIHEFDKMYSLLLNGESISFNGKAKQIYPSRSYKHTVFPRFSNLVCKSAHSSAFVFSAAFFTPERLVRYGYLDITYDKSVSPVSQLAHAYTDFFLNREDKRSISFDDELIITTVRLDAPNRKYWHCLTYDQIYSKFYRLFNTVIRTARFWNLFAYVDSCRRGPIYDLMNFSDNYWNEFARRRLSDYFAFLENCNDRQRSFLFHHTALNEVFNSRFVSRFKTVDKGGYELTESFSEFDKRDYMYDSTLSQEFLKELTAINRKACVDKVKHKEFNDLSGLLLNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2551..4467
                     /locus_tag="Alpa_05"
     CDS             2551..4467
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MAHFTGLKELQNRPHKSGHDISAKNCFTAKVGELLPVWTDFAIPNCTYRFNLEYFTRTRPVQTSAYTRIREYFDFFAVPCDLIWKSFDSAVIQMGEKAPIQSKDLLTNLTVKGDLPYCSLSDLSFALKFASGNPASLGNKVSVSPGFGNIFGYNRGDVNHKLLSMLDYGNVVDKSANWIGTNANRWWNRRVATADSAVYSQKYNVNLAVNLFFLATYQKIYQDFFRWSQWENADPTSYNFDWYRGSGNLFGSSDLAAAIPASSDYWKRDNLFSLRYANWNKDKFMGILPNSQFGDLAVVDLGTISASGSKIPVGAYDGVNDSGTFKQFQTSSESYNGSSDKTTQIYPRNPDSISVRADSNLWAVLGESSDLKLKFSVLALRQAEALQKWKEITQSVDTNYRDQIKAHFGVSVPQSEAHMAKYIGGVARNLDISEVVNNFLPGPGNDSSQAYIYGKGVGSGQGSMTFNTGSGYYILMCIYHAVPLLDYSISGPDGQNLVTSVEDLPIPEFDNIGMESVPAVELMNSSLYSNVNSADKILGYSPRYYNWKTKIDRIHGAFTTTLKDWVAPIDDSFLYSLFGDSLSTYKGVTWPFFKVNPNTLDDLFAVKVDSTWETDQLLVNCNVGCYVTRPLSADGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4480..4986
                     /locus_tag="Alpa_06"
     CDS             4480..4986
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MRETEKNSCTCFGPGYRKCTPIREVQICPICASSEPDIVLEELPTEPFRFEKVGTEENEAVRVRSDVSMLLHAADMAKKYGTGFVKSMIEMHRPKSSGLQSEMDLMSDAQILDTIKSRHLQSPSELIAWSEYLIDQAKSIEDEASRIALERESAGTPQEPNSSDSQSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4989..6098
                     /locus_tag="Alpa_07"
     CDS             4989..6098
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MGLLDFIPVVGDIASSIGNVVSTNKANNANMAVNRMNNEFNAAEAEKARQFQLDMWNKTNEYNSASAQRSRLEEAGLNPYLMMNGGSAGTAQSSGSSTPASASSPLSMQRQDFSGLSNTLASALQISNQTKETNANVQTLQSQKSLYDAQANSILSNVDWWKLGPEYKKWSQMTGLARAGLQFQTDKQNLRNMTWSGNLIQAQHIGALLDNKSKRIINNYLDEGQRLQLDLMAAQYYDAMASGHLKYQQAKSEITKRILMMAEAKGLQINNKAAEDTADGYIKALNAEYSASYDINSPFKYGEDSYVPASVLKSRMDALNSKWQFDKRYWTEGLNALGTVGNAVGSVGNLRKPGARNTYVYGNRTYNRY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_021963491.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cacgctgccc tttactactc ctctgcactt caccccctat atacccccta aaaaaacctt 
       61 tatactggcg aaagcctatt tcatttatcc cgcaagggtt ttcggttaat ctccgccgaa 
      121 aactcttact tcttgcctta tattagataa atgacagtat tttctcaaaa aaaactctga 
      181 aaaaattgtg tttttaaaat atattctttt tctttgtggc ataatactgt ttgtaatatt 
      241 aaaaatgttg tgattatgta tatttcttcg attgtcgttg tttttgctcc taaatctcca 
      301 ggtttggagc atttgtctgc tgtttctctt gctcttgatt acagagtagg ctgcactctt 
      361 tttcatgctg tggaatatgt ttccaagcat cccttggtta aaccttgttt aaataaatac 
      421 gttattgcta gtttatcatt tcaatattct gagttatgaa aattactcct caacaatgga 
      481 ttgagatagt taaacttatc tcgactttta ttattggtgt tatcacttgt ctatttgtac 
      541 agtcatgtac tgcatctatg tctatttcta agtataatag taatagttct cagtctactg 
      601 aacaaacatc tacatcttct gtagattcta ctaaaataag tattaatcgt taaaatttac 
      661 aattatggaa aatgaatttg tactagtttc tgttaagcct aagaattctc agtctcaagg 
      721 tcagattttt gttgttcgcc ggaaagatat ctcttcattt gtagagacga aattatcttc 
      781 ggataatatt ttgctgattg attctattga tacatttgct atttcttctg aacaatagtt 
      841 atgattaatc aggaagtcat agataagtat cttcttgctg agtgtcttca tcctgtcaag 
      901 gtgttgaata agtatacgaa tgattttata tattcccctt gtggtcattg ttattcgtgt 
      961 ttgaaaaata agtcaaatcg tgataccgca ttagctatga atattgcttc aaattttaaa 
     1021 tattgctatt ttgtttggct gtcttatgaa gatcaatacc ttccttatat ggaacttaaa 
     1081 tccatagatt ccttggataa taatcgttct aattatttct tctcttctgt taataggaat 
     1141 ttgcgcattc ttgttcctaa tggaaaggat aggattatag aagatccttt atttgaattt 
     1201 actcatccta tgacttcttt tgaatatcaa gatattattg ttaagagtca tggtcgttat 
     1261 gactttcttc gtaaatgtgt tgtttatcct cgttttgaag attgtgataa tcgcatccct 
     1321 tattgtaata cttctgattg tcagaaattt cttaaaagac taagatttca ttcaaaaaat 
     1381 aaatataatg aagaaatacg tttttacggt gtatcagaat atggtcctcg gacatatcgt 
     1441 ccgcattggc atttgttatt attctttaac tcggatgaac tcacctcggt tatacagcaa 
     1501 tttgtatctg agagttggtc ctacggtcgt acaacttgtg aactatcgcg aggaggctct 
     1561 tcttcctacg ttgcgtcgta tgttaatagt aatgtatgct taccttcatt atatctccag 
     1621 cacaaggaga ttagagcacg ttccctccac tcaaaaggat atggaaacaa ttatgtcttt 
     1681 cccactcaag ccacgataca tgaatttgac aaaatgtact ctcttctcct taatggtgaa 
     1741 agcatctctt ttaatggtaa agctaaacaa atctaccctt cacggtcgta taaacataca 
     1801 gtattcccca gattctcgaa tcttgtttgc aaatctgcac atagcagtgc tttcgtattt 
     1861 tcagctgcgt tcttcacgcc cgagaggctc gttcgttacg gatatttgga cataacttat 
     1921 gacaaatctg tatcccccgt atctcaactt gctcatgcgt atactgattt tttcttaaac 
     1981 cgtgaagata agagatctat ttcttttgat gatgagctga taattactac tgttcgtctt 
     2041 gacgctccta atcgtaagta ttggcattgt cttacttatg atcaaattta tagtaaattt 
     2101 tacagacttt ttaacacggt tattcgcact gctagatttt ggaatttatt tgcatacgta 
     2161 gattcttgtc gccgaggtcc tatttatgat cttatgaatt tttctgataa ttattggaat 
     2221 gaatttgccc ggcgtcgtct ttctgactac ttcgcatttt tggagaattg taatgatagg 
     2281 caacgttcat ttttgtttca tcatactgct ttaaatgagg tttttaattc tcgatttgtt 
     2341 tctagattta aaaccgtcga caaaggtggt tatgaattaa cggaatcttt ctctgaattt 
     2401 gacaaacgtg attatatgta tgattccact ttatctcaag aattccttaa agaattaacc 
     2461 gccattaatc ggaaggcgtg cgtggataag gttaaacata aggaatttaa tgatttaagt 
     2521 ggtttgttgt tgaataatta attttttatt atggcacatt ttactggtct taaggagttg 
     2581 cagaacagac ctcataaatc tggtcatgac atttctgcta aaaattgctt tacggcaaaa 
     2641 gttggagaat tgttgcctgt gtggaccgat tttgcgattc ctaattgtac gtacagattt 
     2701 aatcttgagt attttactcg tactcgtcct gtacaaactt ctgcgtatac tcgtattcgt 
     2761 gagtattttg atttttttgc ggttccttgt gatcttattt ggaaatcatt tgattctgct 
     2821 gtgattcaaa tgggagaaaa ggctcctatt cagtctaaag atttattaac taatcttact 
     2881 gttaagggag accttcccta ttgttctttg tctgacctta gttttgcgtt gaaatttgct 
     2941 tctggaaatc ctgctagttt aggcaataag gtatctgttt ctcctggatt tggtaatatt 
     3001 tttggttata atcgaggaga tgttaatcat aaattgttgt cgatgttgga ttacggtaat 
     3061 gttgttgata agtctgcaaa ttggattggt actaatgcta atcgttggtg gaataggaga 
     3121 gttgcgacgg ctgattctgc tgtttattct caaaagtata atgttaattt ggctgttaat 
     3181 ttattctttc ttgcaactta tcaaaagatc tatcaagact tttttcgttg gtctcaatgg 
     3241 gaaaatgctg atcctacatc ttataacttt gactggtatc gaggttctgg taatttattt 
     3301 ggttcttcgg atcttgctgc cgcgattcct gctagtagtg actattggaa gagagataat 
     3361 ttattttctc ttcgctacgc taattggaat aaggataaat ttatgggaat tcttccgaat 
     3421 tctcaatttg gcgaccttgc agtagtagat cttggcacta tttctgcatc tggttctaaa 
     3481 attcctgttg gtgcgtatga cggtgtcaat gattctggta catttaaaca atttcagact 
     3541 tcctctgaat cttacaatgg ttcttctgat aagactacgc agatttaccc tcgtaaccct 
     3601 gattctattt ctgttcgtgc agattctaat ctttgggctg tattaggcga atcttctgat 
     3661 ttaaaattga aattttctgt tcttgccctt cgccaagctg aagctcttca aaaatggaaa 
     3721 gaaattactc aatcagtcga tactaattat cgtgatcaga ttaaagctca ttttggagtt 
     3781 agcgttcctc aatctgaggc tcatatggct aagtatattg gaggtgttgc ccgtaatctt 
     3841 gatatttctg aagttgttaa taatttcctt ccaggtcccg gaaatgactc ttctcaggca 
     3901 tatatttatg gtaaaggtgt tggatctggt caaggatcta tgacatttaa tacaggttcc 
     3961 ggctattata tacttatgtg tatataccat gctgttcctc tgttggatta ctcaattagt 
     4021 ggccccgacg gtcaaaatct tgttacatct gtcgaagatc tccctattcc tgaatttgat 
     4081 aatattggaa tggaatcagt tcctgctgtt gagttaatga attctagtct atattccaat 
     4141 gtaaattctg cggataagat tttgggctat agtcctcgct attataattg gaaaactaag 
     4201 attgatcgta tacacggtgc atttaccact actctcaaag attgggttgc ccctattgat 
     4261 gattcatttc tttattcttt gttcggtgat tctttatcta cctataaggg tgttacttgg 
     4321 ccatttttta aagtcaaccc taatactctt gatgatcttt ttgctgtcaa ggtcgactct 
     4381 acatgggaaa cggatcaatt gttagtgaat tgtaatgttg gttgttatgt tactcgccca 
     4441 ttgtctgctg acggtgtgcc ttattaaaat tttttgatta tgagagaaac tgaaaaaaac 
     4501 tcttgtacat gttttggccc aggttaccga aaatgtacgc ctattcgaga ggttcagatt 
     4561 tgtcctattt gcgcctcttc tgagcctgat attgttttgg aagagcttcc taccgaacct 
     4621 tttcgttttg aaaaagtcgg caccgaggaa aatgaagctg ttcgtgtccg ttctgatgtt 
     4681 agtatgctac ttcatgctgc tgatatggct aagaaatatg gaactggatt tgttaaatct 
     4741 atgattgaga tgcatcgtcc taaatctagt ggtcttcaat ctgaaatgga tcttatgtct 
     4801 gatgctcaga ttctagatac tattaaatcc cgtcatcttc aatcaccttc tgagttgatt 
     4861 gcgtggagtg agtatcttat cgaccaggct aaatctattg aggacgaagc ttctcgtatt 
     4921 gctcttgagc gggagtctgc tggcactcct caagaaccta attcttctga ctctcaatct 
     4981 gaatagttat gggacttctt gattttattc ctgttgttgg tgatatagcg tcttctattg 
     5041 gtaatgttgt ttctacaaat aaagctaata atgcgaatat ggctgtcaat cggatgaaca 
     5101 atgagtttaa tgctgccgag gctgaaaagg cccggcagtt tcagctggat atgtggaaca 
     5161 agactaatga atataattct gcgtctgctc agcgttctcg cttggaagaa gctggtttaa 
     5221 atccatattt aatgatgaat ggtggaagcg ctggtaccgc tcagtcttca gggtcttcta 
     5281 cacctgcatc tgcatcttct ccgctgtcta tgcaacgtca ggacttttca ggtcttagca 
     5341 acactctggc ctctgctctt cagatttcta atcagactaa ggaaacaaat gctaatgttc 
     5401 agacacttca gagccagaaa tctctttatg atgctcaggc aaatagtatt ttgtctaatg 
     5461 ttgattggtg gaaattaggc cctgagtata agaagtggtc tcaaatgact ggtcttgctc 
     5521 gtgctggatt acaatttcag actgacaaac agaatcttcg caatatgact tggtccggta 
     5581 atttgattca ggctcaacat attggtgcct tgttggataa taagagtaaa agaattatta 
     5641 ataactatct ggacgaagga cagcgccttc aattggattt aatggcggcc cagtattatg 
     5701 atgctatggc ctctggtcat ttaaaatatc agcaagccaa atctgaaatt actaagcgta 
     5761 ttctaatgat ggccgaggct aaaggtctgc agattaataa taaagctgca gaagatactg 
     5821 ctgacggtta tataaaagcc cttaatgctg aatactctgc gtcctatgat attaattctc 
     5881 cgtttaaata cggtgaggat tcttatgttc cggcatctgt attgaagtct cgtatggatg 
     5941 cccttaattc caagtggcag tttgataaac gttattggac tgaaggtctt aacgctcttg 
     6001 gtactgttgg aaatgctgtt ggtagcgtag gtaatcttcg taaacctggt gcgcgtaata 
     6061 cttacgtata tggtaatagg acttataatc gttattgata gtcggttcat ttcttattcc 
     6121 ccggggtacc cggggaattt tttttttaac attttgttaa cttttattaa ttattatgat 
     6181 tagctaatta taataattat ccttatcttt gtattgtaat caaaaagcaa tatgttatga 
     6241 aaaagaattt ttattgtttg gtcgaaaccg gcttttgtaa acctcaagta gtatttactt 
     6301 attacggtac taaatctaat tttaatcgta aatccaagaa atttatttat gatcattatg 
     6361 gccgtttgtt tttaaagtcg aaaatgtatt tggagatcta tgactctttt gcctctta 
//
