FEATURES             Location/Qualifiers
     gene            complement(1145..1303)
                     /locus_tag="Alpa_01"
     CDS             complement(1145..1303)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MEAKGFVYVVVFQNSLDERVAHVYTGTFDRVFKKAKSLCSSSNYFIREIKVV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1305..1535)
                     /locus_tag="Alpa_02"
     CDS             complement(1305..1535)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MSAKKGKWIERFNQKNDFDFTVSRVIVTRVAYVRVIKLIPITRFSLFGITVTEAMKIARSFNTLADHVCMITLIED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_008775332.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2060..3133)
                     /locus_tag="Alpa_03"
     CDS             complement(2060..3133)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MAIGASAATLLGSGILGASAIGSTVAGNKGNASIAQQNNAFNEKMLQKQMDYNTQMYQQQLGDQWQFYNDAKQNSWDMFNAANDYNSASAQRERLEAAGLNPYLMMSGGNAGTATAQSSPQASSPSAQGVTPPTATPYSADYSGITQGLGMVLDKIATQPDRDVKSAEADNLRIEGKYKAAKTIAEIVQMRTNAKTQEGRLALDKLIYSIDKDLKSSQMDVNRESIANMQAERKLTNVQTLLVDKQLSWMDAQSKMDLAQKAADIQLKYAQGALTRKQVDHEIAKIAETEVRTSLDIQEQTTNVLKQQGMRQENSFNEATFDNRVKSVKESLWNLMHEADSYGLSKTIGRVIRPLYD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:WP_008775338.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 20 and 21"
     gene            complement(3471..3941)
                     /locus_tag="Alpa_04"
     CDS             complement(3471..3941)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MFAKRRIEPYVTPVNPSPVSAKDMLCSEFRQESPIDQFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLGDDQLISFVKSRFIQSPSELMAWSQYLMSSSDVVVAELAAVQQEQQSQQSQQSSESSASTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3975..5744)
                     /locus_tag="Alpa_05"
     CDS             complement(3975..5744)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MANIMSLKSLRNKTSRNGFDLSSKRNFTAKAGELLPVKTWEVLPGDTFKIDLKSFTRTQPLNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTDLSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYSDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAALINSRITSSNSTTTLRFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5771..6055)
                     /locus_tag="Alpa_06"
     CDS             complement(5771..6055)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MIEEFYSYLDYMHLTTFFESQQEFYESDLIGDDDLCTDQWENSYYPYFYYNVHTNEPFEKTPVYRLYASDVKKLFNDRIKHKKLNDANKIFIDE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gaaaacgtcg tttctgagga cgagaataaa cgcctcgctg tatcataaat tccataagag 
       61 taagcacgtt cacgtgaaga tttagaagca aatcctttac accggggaaa gtagtaagcg 
      121 taacacgacc gccatacgtc aaactcttta tatttgccat tgagtacgat gcttctttta 
      181 acaaagttct gaggggtaga tgagtatatc ttctcacgtt gacagtcaag aaagccttga 
      241 cccaatttct gagaatgaac gttgaacgga cagacggaac taagtttaaa aactttgggt 
      301 atagtgcaac tgctattaac atagctcgca acgtatgatg aacactgacc tttggatatt 
      361 tgacagtcga tacgaccaag ggtccatgct tgagatatat tctctgaaca tacctgtaac 
      421 gcttcgtctg attggaggaa taataagata tgataatgcg ggcggaaatg gacgggtcca 
      481 tattctccga cagcaaagta acgcactttt tccgagggac attgttttga gacataataa 
      541 cgtaatcttt taaaaaataa ttgtaaatca gttttacgaa gataggggac atctccaaag 
      601 agatagaact tatttaataa acgatcaata tcttcttgtt tcatatcaga tggaccaaga 
      661 atttcacctg tttccttatc tacaagatca ttaccaaatg ggcgttcaag actatctaca 
      721 aaagtagcac gaggaatata acgattagca taagtaagag ttataaacaa tgtgtgctta 
      781 gcaacataag attcaagatc acactgaaag gcataacgtg agtttttagc caacatgcat 
      841 gcctgacagt gaccacaagg aacaaccata gattcgttag tataaggatt aacgattttc 
      901 ttaggatgaa gacacttaca aaaagaattt ttaatcatat cagaacttag gagcaaagtt 
      961 aatatgagta gaatctactg aactagtagt agtctgttcc gttttctgag tactattcga 
     1021 gttgttcttc gaaacagata aagacactgt gcaggattgc acaaacaaaa ttgcggaaat 
     1081 tgaaagaatc gcagtaacga cgatcttaat gatgtcatag atttgttgat tagaaagttt 
     1141 catattaaac gactttaatt tcacgaataa aataattaga agaagagcaa agagactttg 
     1201 cttttttaaa tactcgatca aaagtacctg tataaacatg agcaacacgc tcatcaagag 
     1261 agttttgaaa aactacaacg taaacaaatc ctttagcttc catatcaatc ttcaattaaa 
     1321 gttatcatac aaacatgatc agcaagcgta ttaaaagatc tagcgatctt catagcttct 
     1381 gtaacagtaa taccaaaaag agaaaaccta gtaataggaa tcaacttaat aacacggaca 
     1441 taagcaacac gagtaacaat aacacgggat accgtgaaat caaaatcgtt tttctgatta 
     1501 aaacgttcaa tccattttcc ttttttcgca gacatattca aataggtttt aaatttctgc 
     1561 tgcaaataaa gggaataatt atcattatga caatataata gaagttaatg ataactaata 
     1621 tatgttatat aataattgaa atcctcatga taaatataga taaacatacg aggaatacca 
     1681 ttaacaacta tatctaggaa ctgatactgg tacaaataaa ccggagaaag attccgaagg 
     1741 aaatcgaata tttcaatcag atcatgaaag aggataggac aacctttaat ataacaattc 
     1801 atatgtaatt atattttaat cctgtcattt ttcgtataat aggacaagaa aaaaggatag 
     1861 ccgagtggat taatcggcta cccttcggga aaatgacatg ggtgttactt aaataaagat 
     1921 ttgataaatt taccaaacaa ataaacacac aaaatcaaaa cagctaaaat aatcagccat 
     1981 tcactaccag caggcaaaaa gcctaaatat aaacatttca taacttaaaa tatttggtta 
     2041 atcacgcaaa tataataaat taatcataaa gaggacgaat aacacgacca atagtcttag 
     2101 aaaggccata cgaatcagct tcatgcataa gattccaaag agattcctta acagacttaa 
     2161 cacggttatc aaacgtagcc tcattaaaag agttttcctg tctcataccc tgttgtttca 
     2221 aaacattagt agtctgttcc tgaatgtcaa gagaagtacg aacttctgtc tcagcaatct 
     2281 tagcaatctc atgatctacc tgtttacgag tcaatgcacc ttgtgcatac ttaagctgaa 
     2341 tatcagcagc tttctgggca agatccatct tactctgagc atccatccaa gaaagctgct 
     2401 tatcaacaag aagagtctgg acattcgtta atttacgctc agcctgcata ttagcaatac 
     2461 tttcacgatt aacatccatc tgagaagatt taagatcctt atcaatagaa tagatcaact 
     2521 tatcaagagc aagacgacct tcttgtgtct tagcattcgt acgcatttgc acaatctcag 
     2581 cgattgtctt agcggcctta tacttacctt caatacgaag attatcagct tctgcactct 
     2641 taacatcacg atccggctga gtagcaatct tatccaatac cattccaaga ccttgagtaa 
     2701 taccagaata atctgcagaa tacggagtag cagtaggagg agttacacct tgagcagaag 
     2761 gagatgaagc ctgaggagaa gattgagcag tcgcagtacc tgcatttcct ccggacatca 
     2821 ttaaataagg attcaaacca gcagcttcta aacgttcacg ttgagcagaa gcagaattat 
     2881 aatcatttgc tgcattaaac atatcccaag aattctgttt agcatcatta taaaattgcc 
     2941 actgatcacc aagttgttgt tggtacatct gtgtattata atccatctgt ttctgtaaca 
     3001 tcttttcatt gaaagcatta ttctgttgag caatactagc attaccttta ttaccagcaa 
     3061 cagtagaacc aatagcagaa gcaccaagaa tacctgaacc aagcaatgta gcagcacttg 
     3121 caccaatagc cataataata aaaattaaat taaacaatac gcaacaaagt tgcgattaat 
     3181 ttgcgtttca cgcagagata aggtttaggt taaaaaaatt aaggggagac tgatcgcaag 
     3241 cccgtttttc agttttccat gtctgagact cagaaagatc ttaaggacag aattttttta 
     3301 acggagccgg acagctcccc ccaaaggggc cccccatcgc gcgcagacct gatcttttat 
     3361 cgcacgcgca cgcaaaaaaa aggacgcgca cgtacgtaaa ataatactaa agtcaataaa 
     3421 agtaatattt tttgagacaa aattaatatt aaatctcaaa tattttatta ttactcagta 
     3481 gacgcagaag attcagaaga ctgttgagat tgttgagact gttgttcctg ttgaacagca 
     3541 gcaagttcag caacaacaac atcagaagaa ctcatcaaat actgactcca agccatcaac 
     3601 tcagaaggag attgaataaa gcgagacttc acaaagctaa tcaactgatc atcaccaagt 
     3661 tttgcacgaa gatcaccaaa cttaggttca ttaaccgaca tagattcaaa atgagacaag 
     3721 agagattcac gagacaaccg atcaaggcgc tgttgattaa acaacatata aatatcagaa 
     3781 gtcaaacgaa cacttttcac accatcaaat tcaaattctt caaacaggaa ttgatcaata 
     3841 ggggattctt gacgaaactc agaacaaagc atatcctttg cagaaaccgg actaggatta 
     3901 accggtgtta catacggttc aatacgacgt tttgcaaaca taacaataaa gttaaaaagt 
     3961 taaacaatag gggattaata aggtaaacca tccgtatcaa gattacggac taccttcaca 
     4021 tcaaagaaag tactacaaag gaactgatca gtatcaatac tagaatcagc ttctacagca 
     4081 aaaagaggat tcaaagaatt aggattaacc ttaaacaagg tatagttcca actagaatta 
     4141 gcaggattag gaacaggtga ctcaggagtt tcaacagaat aaccgaattg attagcaagc 
     4201 gattgattat cataagaaat aacccaattc ttcaaagacg ttttaaacgc accaatagaa 
     4261 gtatcaatat ctgtcttata atcaatataa cgaggagcgt aaccgatctc attaggaata 
     4321 gacaaaggca aaacagacaa aggaccatta gaaacataag acaaagggac tgtctgcata 
     4381 ccaactcgat caaactcggg aatggcaaaa tcagcagcat taacacgagt aacagacgga 
     4441 ctaacaaaat cagtagtata atcaatcaaa ggcaagcaat gatagataca cattacaacg 
     4501 ccataacgac cttgtgaatt gaaattgatc acaccattag aaacaccagt accttttcct 
     4561 gcaatatcag cagcattaga acctgtaata ttctgattca ctacttcatt aatatccagc 
     4621 gaactagaaa taccaccaag ataagtacac atttcagaga agccgtcacc aggagaaaca 
     4681 ttccaatgtt tttctacttg ttctttataa tccttgttac cagactgagt aatttctttc 
     4741 catttctgta aaaattcagc ttgacggaga gcaagaatac taaaagaagg atgagttaaa 
     4801 agaggcgtag catcaggaat agcaggatca gtagggaagc gaagagtagt agtagaattc 
     4861 gaagaagtta tcctagaatt aattaaagca gcagaactac cagcaacaac cggaacagac 
     4921 atagaaatac tagccacatc accatactgt tgattaggaa cgacaccgtg gaataaatcc 
     4981 ttttgccagt tacaataccg aagatcaaac atactgtaat tctcatagaa atcagagtag 
     5041 ttaaaagaaa gcatcattcc agaagaacca gtactataag gcatatagtc cacgttaaag 
     5101 caagaaggac ttacacgttc ccattgagag tcacgatagt aatcagcata aattttctga 
     5161 taagcaagaa gattaaacaa agacacattc aagttataat gcaaaggtct tttagcaaaa 
     5221 gtattactag tagattctgc ataataatac aaattaccat aaccaagaca ttccattaac 
     5281 ttagcagaac aaagagcacg attataacca aaataattag ccttattcgt aacagcagtt 
     5341 gaattagaag caagagaatt caaataacga gaaatgctag aaagatcagt aaaaggcata 
     5401 gagccatcaa gcttaacaac attcaaagga ctagaatcca atgcatgttg aggattgtca 
     5461 tacatctgag taagagaagt attcgcctta ttccaaagaa gatcataagg aacaaaatag 
     5521 aaatcataat actctctcat acgagcaaat gcagcagtat tcaaaggttg agtacgagta 
     5581 aacgatttaa gatcaatctt aaacgtatca ccgggaagaa cttcccaagt tttaacaggg 
     5641 agaagctcac ctgctttcgc agtaaagtta cgttttgaac taaggtcaaa accatttcga 
     5701 gaagtcttat ttcttaaaga cttcaaagac atgatattag ccataaatta ataaattaaa 
     5761 agtttaacaa ttattcgtca atgaatatct tattagcatc attgagtttc ttatgcttaa 
     5821 tacgatcatt aaaaagtttc ttaacatccg aagcatacaa acgatacaca ggggttttct 
     5881 caaaaggttc attcgtatga acattataat agaaataagg ataataagaa ttttcccatt 
     5941 gatcagtaca aagatcatca tcaccaatca aatcactctc ataaaattcc tgctgagatt 
     6001 caaagaatgt agtaaggtgc atataatcaa gatatgagta gaattcctca atcatacgct 
     6061 gtttagactt acgttcagca agggtggtat gagtgcaaac aaaatacaag aaatgtttag 
     6121 agacaagtaa ctcagtatag atccgatgaa cccaacgatt aaattcatcc gactctacag 
     6181 gtcgaaccat agcgtcacga tcaagaaaat aattagaaag atcaagcaaa gacttctgat 
     6241 ctgatacatg tccaaacaaa tcaagtaagt aagtatcatc cgtaaaatga aaatgtttta 
     6301 tataaaaagc tatttctttc gcaagagaaa acgt 
//
