FEATURES             Location/Qualifiers
     gene            complement(1220..2284)
                     /locus_tag="Alpa_01"
     CDS             complement(1220..2284)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MIGAAIGAAGALAGGIVNQIGNNKQGNKNRKHQLEMQRIQNEWASSESQKSRDFAKSMFDATNEWNSAKNQRARLEEAGLNPYLMMNGGSAGTASSTSANTVSGASGSGGSPYQFTPTNMIGDVASYAAAMKSMSDARKTNTESDLLDQYGAATYESRIKKTMADTYFTQRQADVAIAQRANLLLRNDAQEVLNMYLPEEKRIQLQMNGAQYWNMIREGVISEEQAKNLIASRLEIEARTQGQHISNKIARSTADAVIDATCTAKENEAAFNRGYSQFSNDVGFRTGKMDRWSQDPVKARWDRGINNAGKFIDGLSNIVGAVTKFGSFRREGRSVIEQFDDNQGYSSTRQRYRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 19 and 20 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2281..2691)
                     /locus_tag="Alpa_02"
     CDS             complement(2281..2691)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VTSEMLAQGVLPEPNPVGDFLFDHNADGSVTFCSDYGILFGQKAIDNMNQTQLRRYMNSLVPRSSNYTRNYNDDFLLDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAYAASLSASVVNPTQSTQSAAQSSTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2793..2927)
                     /locus_tag="Alpa_03"
     CDS             complement(2793..2927)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="VNPSVVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2924..4630)
                     /locus_tag="Alpa_04"
     CDS             complement(2924..4630)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MAGLFSYGDIKNKPRRSGFDLGNKNAFTAKVGELLPVYWKFCLPGDKFKISQEWFTRTQPVDTSAFTRIREYYEWFFVPLHLMYRNSNEAIMSMENQPNYAASGTQSITFNRKLPWVDLLTLNNAVENVKASTYHDNMFGFSRALGFAKLYNYLGVGQFDPSKTLANLRISVFPFYAYQKIYNDYYRNSQWEVNKPWTYNCDFWNGEDTTPVASLKDLFDTNPNDSVFELRYANWNKDLYMGAMPNAQFGDVAFVPVDSSGKLPVSLPSIEVGGVAPIYNTGAGGVQPDAQIGLRGAVTGAPDNGQTVTAYGADKTDAARPYFYAVPDGSVAHLKTNAKTIQVPYEFSSKFDVLQLRAAECLQKWKEIAQANGQNYASQVKAHFGVSPNPMTSHRCQRVCGFDGSIDISAVENTNLSSDEAIIRGKGIGGYRVNKPETFKTTEHGVLMCIYHAVPLLDYAPTGPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIKEPRPFGYVPRYISWKTSVDVVRGAFIDTLKSWTAPIGEDYMKIYFDNNNVPVVRILASIRGLK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4636..4845)
                     /locus_tag="Alpa_05"
     CDS             complement(4636..4845)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MAYDIDIETFPTIHNDIVDGIPESYVHYFKQYLYEIEDRRISQNTDVSVRPLDALSETGIIQLKFNFID"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4845..5240)
                     /locus_tag="Alpa_06"
     CDS             complement(4845..5240)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MYRPKYFSFTEMILTASTAQENNLPDWDDINRLLELCRWILDPVREMYGKPIVVTSGFRTPFLNRLVGGVSTSQHMQGLAADLRCDDPKALFDLIAESDLPFDQLIYYQKKKFVHVSYSPTYRHEVIVKDN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.peptidase.M15A"
                     /inference="similar to AA sequence:MV_prot:putative.peptidase"
                     /inference="similar to AA sequence:INSD:WP_010803336.1"
                     /inference="similar to AA sequence:INSD:WP_028728351.1"
                     /db_xref="InterPro:IPR009045"
                     /db_xref="InterPro:IPR013230"
                     /db_xref="eggNOG:bactNOG163302"
                     /db_xref="eggNOG:bproNOG20824"
                     /db_xref="eggNOG:NOG79001"
                     /db_xref="eggNOG:proNOG95037"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5243..5395)
                     /locus_tag="Alpa_07"
     CDS             complement(5243..5395)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MEKQFYLVLLHYGSEVSSKVVISLDRLDSFLSRGYTVEFVQPIRVLSDEL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5402..5956)
                     /locus_tag="Alpa_08"
     CDS             complement(5402..5956)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="VTLFEQAKRTFFVIKKYLQVDHSLDNAPEALRFIYNACRLSLYLNFSELEGCSAVYRLFLAYRNLCDHWITVPSNHIAFYGQLRRAFRTIYAFYSYMDSKHLHDQLLKVRSWSQNNYLSTQVDFRYFYPLTDGELMCNSYREVLALSPFCRAAYAEVAADNRQRIKHKYLNDLNCVLIAECDRH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 atcccgcaac gtacgatgaa gcggaagacc atacacgttg cgtatctgaa tcaccaaagc 
       61 gccatgcctt atccacaagc tgtccaaata tctgggcgag ccgttccgag tcaaagaaaa 
      121 ataagatatg aaaatgcgga cggaatgttt taggaccgta ttcaccgaca gtgtacgtat 
      181 gaatcttttc atttgtatat ttttttattt gttgattaat tcttttatga aacagttgaa 
      241 catctcggta attaaggtag ggtaacaaat cgaccatatt aggatactta acaacagaac 
      301 gaccatcagg ataaacagtc ctatcaagat gtgttttagc caagagatcg gtaacagctt 
      361 tatcactgag attagttgga caatcaaatt cttcatcaca aaaagacatt tcacgatcat 
      421 atccttgaga tgtaacatac gtgtaaacat gatcacgagg tacacaacaa agatggtaag 
      481 aatcattaag tttataaaac ctagcaacag gtatatgtac tgtggcataa gtcaaagtta 
      541 caaagaaaca acaacgagaa gatgcaagct gaatattaca acgaagttcc ttttgaatag 
      601 ctttattaga aagacacacc tcacattcac cacattcaac atatatggga tcacctgtat 
      661 atctgttttt aataataaca ggatgcaaac aagagcaata tggtttaact actggactaa 
      721 tcatatacaa agataaacga taaaaattga aatgtgcaag caaacgtttt tttttaacta 
      781 taaattaaca tcaagaacat acctatatat atagtgatgt cacttttgct tatcctgaac 
      841 aaggaaggtt tgaatcggaa ataacagtta atccgatttg ctttcgcaca aaagtgaaga 
      901 gaactacgta ccaaatctaa atattagtta ataaaatgga ggatattcgc gaaaatattt 
      961 acaaaaaaaa cggggatcgc cactttatga tgcctccggc ggccacggct acggcccgtg 
     1021 gacggccgac gtttttttca tgctcgactc ccgtctcgtc atagagattt agggagcgtg 
     1081 cctgctcccc ccaaaggggc cccccatgcg ctggacggaa agaggggaca gaacgaagag 
     1141 tgaagcagga gggccaaacg gctaaaggcc gacttatcac aagccagccg atagtaatta 
     1201 accaacaaaa gtaaacaaac tacctacgat agcgttgacg agtagaagaa taaccctgat 
     1261 tatcgtcaaa ttgttctatc acagaacgac cttcacgacg gaaagaacca aacttagtaa 
     1321 cagcaccaac aatattagag agaccgtcta taaacttgcc agcattatta atacctctat 
     1381 cccaacgagc tttaacggga tcctgagacc aacggtccat cttacctgta cgaaaaccaa 
     1441 catcattaga aaattgggaa taaccacggt taaaagcagc ttcattttcc ttagctgtac 
     1501 aagtagcgtc gatcacagca tcagcagtag aacgagcgat tttattagaa atatgctgtc 
     1561 cctgtgtacg tgcttcaatt tccaagcgag aagcgatcaa attctttgcc tgttcttcgg 
     1621 aaataacacc ctcacgaatc atattccaat attgtgcacc attcatttgc aactgtatgc 
     1681 gcttttcctc ggggagatac atattcagaa cttcctgtgc atcattgcga agaagaagat 
     1741 tagctctctg tgcgatcgca acatccgctt gtctctgagt aaaataagta tctgccatag 
     1801 tctttttaat ccgagattca taagtagctg caccgtactg atcaagtaga tcagactcag 
     1861 tattagtctt acgagcatca gacatagatt tcatagcagc agcataagaa gcaacatcac 
     1921 caatcatatt agtaggcgta aactgataag gcgaaccacc tgaaccagaa gcacctgaaa 
     1981 cagtattagc agaagtagaa gaagctgtac cagcagaacc accgttcatc atcaaataag 
     2041 gatttaaacc agcttcctct aaacgtgcac gttgattttt agcagagttc cattcgttcg 
     2101 tagcgtcaaa cattgattta gcaaaatcac gtgatttctg ggattcagaa cttgcccatt 
     2161 cgttttgaat ccgctgcatt tcaagctgat gttttctatt cttatttccc tgcttattat 
     2221 tgccaatttg attaacgata ccgccagcta aagcaccagc agcaccgatt gcagcaccaa 
     2281 tcattcagta gacgattggg cagcagattg agtagactga gtaggattaa caacagaagc 
     2341 agacaaagaa gcagcataag cctgcaaatc agattctaaa gattgaccct cagaaagaag 
     2401 atgatcaagc caagaagcca tttcagtagc cgactgtata ttgcgatcct tacaataatc 
     2461 aagcaagaaa tcatcattgt agttacgtgt ataattcgaa gagcgaggaa caaggctatt 
     2521 catataacgg cgtaactgag tctgattcat attgtcaata gctttttgac caaacaaaat 
     2581 gccatagtct gaacagaaag taacagaacc atctgcatta tgatcaaata gaaaatcacc 
     2641 aacgggatta ggttcaggca aaacaccctg agcaagcatt tcagaggtca caacacaccg 
     2701 acaactctgc gagtgatcgg aaatatcaga gttaagcgaa tatttcgcaa aacctcttaa 
     2761 gggagtaact ttttcagaca taacgataaa tattaataag gtaaaccatc gtaagacaaa 
     2821 ttgcgagcta cacggacatc aaaatcacaa ttgacaagca attgatcagt attccatgaa 
     2881 ccatcagcga caacaccgaa aataggattg acaacagacg gattcacttt aaaccacgta 
     2941 tagaagccaa aatgcgcacc accggaacat tgttattatc gaaatagatt ttcatataat 
     3001 cctcaccaat cggagcagtc caagatttta gagtatcaat aaaagcacct cgcacaacat 
     3061 caacagacgt tttccaactg atataccgag gaacataacc gaaaggccta ggctctttaa 
     3121 tcggctgaac atcagaagta ttcaacaaag aataagacgg aagttcttca aaaccgacag 
     3181 aatctaactc aggaacaggc catgaatcac catcaacagt agtcataaac tgcaaatcag 
     3241 gaccagtcgg ggcataatcc aaaagaggca cagcatgata aatacacatc agaacaccat 
     3301 gctcagtagt tttaaatgtt tcgggtttat ttacacgata accgccaata cctttaccgc 
     3361 ggataatagc ctcgtcagaa gaaaggtttg tattttcaac agcggaaata tcaatcgaac 
     3421 catcaaaacc acaaacacgc tgacagcggt gagatgtcat aggattagga gaaacaccaa 
     3481 aatgtgcctt cacctgagaa gcataatttt gaccatttgc ctgtgcgatc tctttccatt 
     3541 tttgaagaca ttcagcagca cgaagctgaa gaacatcaaa tttcgatgaa aactcgtaag 
     3601 gaacttgaat agtcttagca ttggttttca gatgggcaac agagccatca ggaacagcat 
     3661 aaaaataagg acgtgcggcg tcagttttat cagcaccgta agcagtaacg gtctgtccat 
     3721 tatccggcgc acctgtaaca gcaccacgta aaccgatctg agcatcaggt tgaacaccgc 
     3781 cagcacctgt attataaata ggagcgacac cgccaacttc gatagacgga agactgacag 
     3841 gaagtttacc ggaagaatca acaggaacaa aagctacatc gccaaactga gcattaggca 
     3901 tagcacccat ataaagatct ttattccagt tggcgtaacg aagttcaaaa actgaatcat 
     3961 tcggattggt atcaaaaaga tcttttaaag aagctactgg tgtagtatcc tcaccgttcc 
     4021 aaaagtcaca gttataagtc caaggtttat tcacttccca ttgagagttc cgatagtaat 
     4081 cattataaat tttctgatag gcatagaacg ggaaaacaga tatacgaaga ttagcaagcg 
     4141 tcttagacgg atcaaattga ccaacaccaa gataattata aagttttgca aagccaagag 
     4201 cacgactaaa accaaacata ttgtcatgat atgtagaagc cttaacattc tcaacagcat 
     4261 tattcaaagt cagaagatca acccaaggaa gtttgcgatt gaaagtaata ctctgagtac 
     4321 ctgatgcagc atagttaggt tgattttcca ttgacataat agcttcgttt gaatttctat 
     4381 acatcaagtg aagaggtaca aagaaccatt cataatactc acgaatacgg gtaaatgcag 
     4441 aagtgtcaac aggttgtgta cgtgtaaacc attcttgcga aatcttaaac ttatcacctg 
     4501 ggaggcaaaa tttccaataa acaggcaaaa gctcaccgac cttagcggta aaagcatttt 
     4561 tattacctaa atcaaatcct gaacggcgag gcttattttt aatatcgccg taagaaaaaa 
     4621 gaccagccat aaaaattaat ctataaaatt aaacttaagt tgaattatcc ccgtttccga 
     4681 aagagcgtca agaggtctaa cagaaacatc agtattttgc gaaatacgcc tatcctcaat 
     4741 ttcatataag tactgtttaa aataatgaac ataactttca ggtatcccat ctactatatc 
     4801 attatgaata gtagggaaag tctcaatatc aatatcgtaa gccatcaatt atcctttaca 
     4861 ataacttcat gccgataagt aggagaatag gacacatgaa cgaacttctt cttctgataa 
     4921 tagatcaatt gatcaaaagg aagatcagat tcagcgataa gatcaaagag tgctttcggg 
     4981 tcatcacaac gaagatcagc agccaaacct tgcatgtgtt gcgaagtaga aacaccacca 
     5041 actaaacggt taaggaacgg agtacggaaa cctgaagtaa caacaatagg tttaccatac 
     5101 atctcacgaa ccggatcaag tatccaacgg caaagctcaa gcagacgatt aatatcatcc 
     5161 caatcaggaa gattgttttc ctgagcagta gacgccgtaa gaatcatctc agtgaaagaa 
     5221 aaatacttag gtctatacat agctacaatt catcagataa aacacgaata ggctgaacaa 
     5281 attcaacagt gtaaccacga gacaaaaagg aatcaagacg atctaaagaa ataactacct 
     5341 tagacgaaac ctcactacca tagtgaagaa gaaccaaata aaattgtttt tccataatga 
     5401 atcaatgtct atcacattcg gcgatcaata cgcaattcaa atcattgaga tatttgtgct 
     5461 ttatacgctg tcgattatcc gcagcaacct ctgcataggc ggctcgacaa aacggagata 
     5521 aagccagcac ttcacgataa gaattacaca tcaactcgcc gtcagtaagt ggataaaaat 
     5581 atctaaaatc aacctgagta gacaggtaat tgttttgaga ccacgaccga acctttagaa 
     5641 gctgatcatg aagatgttta gaatccatat agctataaaa ggcataaatc gttcggaacg 
     5701 ccctacgtaa ttgaccataa aaagcaatat gattggacgg aacagttatc caatgatcac 
     5761 aaagattacg ataggccaaa aacaagcgat acacagcaga acatccctct aattcgctaa 
     5821 aattgagata caaagataaa cgacaagcat tgtagatgaa acgaagcgct tcgggggcat 
     5881 tgtccaaact gtgatcaact tgcaaatatt ttttaataac aaagaaagta cgcttagcct 
     5941 gctcaaacaa agtcacttca tcaaggaatc cataccttgc gaggacttga ggtattttag 
     6001 agacaaagag cgcagttcta acgttagaat caacatccga tacagaagag cggtcaagga 
     6061 tggggtataa tcgattgata agcgaccgct taggccggca aagtgtaggc ttatcaccga 
     6121 gagagaggta aattccatca acgaacttat cgaatatttc cgtgttttct tcgggcttaa 
     6181 aagcttcgat aaacgagcgt tccgcaaaat gctgtgaaaa acgtccgaat ggcgcgattt 
     6241 ttctatta 
//
