FEATURES             Location/Qualifiers
     gene            267..1652
                     /locus_tag="Alpa_01"
     CDS             267..1652
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MLMDSRVNKNIPDFMSAKVNRPYMLEHLRLLEADRYKALALRYPNFISKFRPFILRSIPRVSKLQNFKDEYFEELVWMLPEIAESLKKKNNTDASGAFPQFKGLLKYVNIRDYQLFAKRLRKYLSKKIGKYEKIHSYVVSEYSPKTFRPHFHILFFFDSDEIAKNFRQAVYQSWRLGRVDTQLAREQANSYVANYLNSVVSIPFVYKAKKSIRPRSRFSNLFGFEEVKKGIQHASDKRSALFDGVPYISNQKFVRYVPSGSHIDRLFPRFTHYDGSFLRRSSQIYEVVQRVLRLFARNEPFKKATPRNVSEFVCWWCEYNFRRGCQIKDFPDYMQEFLHIVRLDGYSFLNWDVPIGKISRFFYRFNRFEAMKGSLRSKLKAVSLFYDYRDYQSLKNQLSLQELVFAELGYSDELFDSFYVKPHIKVLKNAYIDKWKDVNYKEVHYFRVKHKVLNDENNIFL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1649..1846
                     /locus_tag="Alpa_02"
     CDS             1649..1846
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKIAPNQWIEIVKLISTFVIGIITTLFVQSCTLSLSISKNNSNSPQQTEQSSVSSVDSTSINLKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1874..3583
                     /locus_tag="Alpa_03"
     CDS             1874..3583
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="VKNHPRRSGFDLSSKVAFTAKVGELLPVKWCLTMPGDKFSLSEQHFTRTQPVNTSAYTRVREYYDWFWCPLHLLWRNAPEVIAQIQQNVQHASSYDGSVLLGSNMPCVSLSQLSKLLSSLKGKKNYFGFDRSDLAYKILQYLRYGNVQTSSSTSGKNFGTSIPLSDRSYSQDYVFNHALSIFPLLGYKKFCQDYFRFTQWQDSAPYLWNIDYYDAKKSTSILPDTFSTSYLTHNTLIDMEYCNWNKDMFFGVLPDAQYGDASVVDISFGMSGQTVVASPSDISSRYTISNPSDSSTPNLSGSPLVLDVLALRRGEALQRFREISLCTPANYRSQIKAHFGVDVGSELSGMSTYIGGEASSLDISEVVNTNITESNEALIAGKGIGTGQFSDKFYAKDWGILMCIYHSVPLLDYVLTSPDPQLFLSENTSFPVPELDAIGLESIPLSCYSNSSLEIPITNPNVDAASLTMGYLPRYYAWKTSLDYVLGAFTTTEKEWVAPITASLWSKMLLPVTVDGSGINYNFFKVNPSILDPIFLVNADSTWDTDTFLVNAAFDIRVARNLDYDGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3586..4056
                     /locus_tag="Alpa_04"
     CDS             3586..4056
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSRKVKKERYSSRLSYNYDYDSKKSKFVVRDKLAVLSSYADSDGVLHVLNDISLLFNQQRLENRLSSTELREMFNRYSPNKSRYLAQLDDDTLLSTLKSRHIQSLSEIKSWTEYCIENFDSLLKAQQAKENEIDDIQETVDEPSAGSSSGAGGSSD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4040..5260
                     /locus_tag="Alpa_05"
     CDS             4040..5260
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VALLIDSLNSCPYDLAIFGLIGSVFGSSMSARSQRKANEMNFKINQMNNEFNAKEAEKARAFQLDMWNKENAYNTPSAQRERMEQAGYNAYMNPADAGSASGMSSTTSASASSPAVMQATDFSSLGEVGVRLAQELKLFSEKKGLDIRNFSLKDYLKAQIDKMRGETNWRNLSPEAIRFNIMSGLEAAKIQMEGLKEQWINQKWSNNLLRANVANSLLDAEGKTVINKYLDQQQQADLNVKAAHYEELLLRGQLHSREARESLSRELLNYTRANGQKISNKVAERTANNLIYATNAAHYYEGTYNMYRGRKAKEDAASDFMGNQWQNQLTGEMLNSKRWDNEMQAWREAINSANALLRGSSDVMDSYNTYENGRYERGRPYTSDYEEYEQFDKARGTRRKTRKYKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_021963491.1"
                     /inference="similar to AA sequence:INSD:WP_007368519.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5538..5711
                     /locus_tag="Alpa_06"
     CDS             5538..5711
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKTKSVKEYWYLVRCHSIGREPEYDLVLKTRSDMKKYVIELRKEWSFVDAGRVDFSI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 atccacgagt gattcaaaat aaatatacag gagaatttgt aaaggtcgac tgtggacaat 
       61 gcccctattg tttgataaaa aaagctgaca gagccacaca aaagtgtgac tttgtaaaat 
      121 ataatcataa gtattgttat tttgtgactt tgacatataa cactcaatac gtgccgaaaa 
      181 tgtcgttgac gcaaattaat gactacatgt ccgaatggct gcctgcacgg ccgccgaagt 
      241 cggttgtcgc gcagctctcc gcgtgcatgc ttatggattc tcgcgtaaat aaaaatattc 
      301 cggattttat gtctgcgaag gtgaatcgcc cctatatgct tgagcatttg cgcctccttg 
      361 aggcggaccg ctacaaggcg ttagcgctgc gctatccgaa ttttatttcg aagtttcgtc 
      421 cgtttatttt acgctctatt ccccgtgtgt ctaagcttca gaattttaaa gatgaatatt 
      481 ttgaagagct tgtttggatg cttcccgaaa ttgcagaatc attgaaaaaa aagaacaata 
      541 cagatgctag tggtgctttc ccacagttta aaggattgtt aaagtatgtt aatattcgtg 
      601 attatcaatt gtttgctaaa cgtttaagaa aatatttatc aaaaaaaata ggaaaatatg 
      661 aaaaaattca ttcgtacgtt gtatccgagt acagtccaaa gacctttcgt ccgcatttcc 
      721 atatcctttt tttctttgac tcggatgaaa tcgccaaaaa ttttcgacag gctgtatatc 
      781 agagttggcg gcttggtcgt gtcgatacgc aacttgcgag ggaacaggct aacagttatg 
      841 ttgcaaacta tctcaatagc gttgtatcta ttccctttgt ttataaagcc aaaaagtcaa 
      901 ttcgcccgcg ctctcgattc tctaacctct tcggatttga agaagttaaa aaaggaatcc 
      961 aacatgcttc ggacaaaagg tctgctttat ttgatggagt gccttatatt tcgaatcaaa 
     1021 aatttgtccg atatgttccc tccgggtcgc atatcgatag attattcccc cgatttaccc 
     1081 actatgatgg ttcttttcta cgaaggtctt ctcaaatata tgaagttgtg caacgcgtat 
     1141 tacgactctt tgcccgaaac gagcccttta agaaagcaac tccgcgaaat gtatccgaat 
     1201 ttgtatgttg gtggtgtgag tacaatttcc gacgaggttg ccaaataaag gattttcccg 
     1261 attatatgca ggaattttta catattgttc gtcttgatgg atattctttt ctaaattggg 
     1321 atgttcctat tggaaaaatt tcccgcttct tctatcgttt taacaggttt gaggcgatga 
     1381 aaggttcttt gcgttctaag cttaaggctg ttagtctttt ttatgattat cgcgattacc 
     1441 agtctttgaa gaatcaattg tctcttcagg aacttgtttt tgctgagctt ggttatagtg 
     1501 atgagctttt tgattctttt tatgttaaac cgcatataaa agttcttaaa aatgcttata 
     1561 ttgataagtg gaaagatgtg aattataaag aagttcatta ttttcgtgtt aaacataagg 
     1621 tgttgaacga tgaaaataat atatttttat gaaaattgct cctaatcagt ggatagaaat 
     1681 tgttaaattg atttctacat ttgtaattgg tattattacg actttgttcg tacagtcttg 
     1741 cacgctttct ttgtctattt caaagaataa ttctaattct ccacaacaaa ccgaacaatc 
     1801 ttcggtttct agtgttgatt ctactagtat taatttaaaa cgttaaatta tgggtttgtt 
     1861 taatctatcg agtgtgaaga accaccctag gcgttcaggt tttgatcttt cttctaaggt 
     1921 tgctttcact gctaaagttg gtgaattgct tcctgttaag tggtgtctta caatgccggg 
     1981 tgataagttt tctttgagtg aacaacattt tactcgtact caacctgtta atacctcggc 
     2041 ttatactcgt gtccgtgagt attatgattg gttttggtgt cctttacatc ttctttggcg 
     2101 caatgcacct gaagttattg cacagattca acagaatgta caacatgctt cttcttatga 
     2161 tggtagtgtt ttgttgggtt ctaatatgcc ttgtgtgagt ttgtcgcaac tttctaagct 
     2221 tctttcttcc ttaaaaggca agaaaaatta ttttggtttt gatcgttcgg atttggctta 
     2281 taagattctt cagtatttac gatatggtaa tgtgcaaact tcgtcgtcta cttcaggcaa 
     2341 gaattttggt acttcaattc ctctttctga taggtcttat tctcaggatt acgtatttaa 
     2401 ccacgcactt agtattttcc cccttcttgg ttataagaag ttttgtcagg actattttcg 
     2461 ttttactcaa tggcaggatt ctgcgcctta tctttggaac attgactatt atgacgctaa 
     2521 gaaatctact agtattttgc ctgatacttt ttctacttct tatcttactc ataatacttt 
     2581 gatagatatg gagtattgta attggaataa ggatatgttt tttggtgtct tgcctgatgc 
     2641 gcaatacggt gatgcttcgg ttgttgatat ttcgtttggt atgtctggtc aaactgttgt 
     2701 tgccagtccg agtgatatct cttctcggta tactatttct aatccttctg atagctctac 
     2761 ccctaatttg tcgggttctc ctcttgttct tgatgttctt gcacttcgtc gtggtgaagc 
     2821 tctccagcgt tttcgtgaga tttcgttgtg tactcctgct aattatcgtt cacagattaa 
     2881 ggcgcatttt ggtgttgatg ttggttccga attatctggc atgtctactt atataggtgg 
     2941 tgaagcttct tctttggata tttccgaggt tgttaacacc aatattactg aatctaatga 
     3001 ggctttgata gctggtaaag gtatcggtac tggtcaattt agcgataaat tttatgctaa 
     3061 agattggggt attttgatgt gtatttacca ttctgttcct cttcttgatt atgttttgac 
     3121 gtctccggat cctcagttgt ttcttagtga aaatacttct ttcccggttc cagaacttga 
     3181 tgcaattggt ttggagtcta ttcctttgtc ttgttattct aattcttcct tggaaatacc 
     3241 tatcactaac cctaatgttg atgctgcttc tttaactatg ggatatcttc ctaggtatta 
     3301 tgcttggaaa acttcgttag attatgtatt gggtgctttt actactaccg aaaaagagtg 
     3361 ggtggctcct attactgctt ctctttggtc aaaaatgtta ctgcctgtaa ctgttgacgg 
     3421 ttcagggatt aattataatt tctttaaagt taatccttct attcttgatc ccattttttt 
     3481 ggttaatgct gattctactt gggatactga tacgtttttg gttaatgctg catttgatat 
     3541 tcgtgtagct cgtaatttgg attatgatgg aatgccttat tagttatgtc tagaaaagta 
     3601 aaaaaagagc gttactcctc acgcttgagt tataattatg attatgattc aaaaaagagt 
     3661 aaatttgtcg ttcgtgataa attggctgtt ctttcgtctt acgctgattc agatggtgtt 
     3721 ttacatgtgt tgaatgatat ttctttgttg tttaatcagc aacggttaga gaatcgtctt 
     3781 tcttctactg aattacgtga aatgtttaac cgctattctc caaataaatc aaggtatttg 
     3841 gcgcaattgg atgatgatac tttgttatct acccttaagt ctaggcatat tcaatctctt 
     3901 tcagagataa agtcatggac tgaatattgt atcgaaaact ttgatagttt gttgaaagca 
     3961 caacaggcta aagaaaatga aattgatgat atacaagaaa cagttgacga gccttctgcc 
     4021 ggctcttctt ctggcgctgg tggctcttct gattgatagt ttgaactctt gtccttatga 
     4081 tcttgctatt tttggcttga ttggttcggt ttttggttct tctatgtctg cccgttctca 
     4141 acggaaggct aatgagatga attttaaaat taaccaaatg aacaatgagt ttaatgctaa 
     4201 ggaagccgaa aaagctcgtg cttttcagct tgatatgtgg aataaggaga atgcgtataa 
     4261 tactccctct gcccagcgtg aacgtatgga acaggcaggt tataatgcat atatgaatcc 
     4321 tgctgatgct ggtagtgctt ctggtatgtc ttctaccact tcagcttctg catcttctcc 
     4381 tgctgttatg caggcaaccg acttctcctc tcttggagag gtcggtgtac gacttgcgca 
     4441 ggaattgaaa ttattttctg aaaagaaagg tcttgatatt cgtaacttca gtcttaagga 
     4501 ttatttgaag gctcagattg ataaaatgcg aggtgagact aattggcgta atctttctcc 
     4561 tgaagctatt cgttttaata ttatgagtgg tttggaagct gcaaaaattc agatggaagg 
     4621 tttaaaggag cagtggatca atcagaagtg gagtaataat ttgcttcgtg ctaatgttgc 
     4681 caattccctt cttgatgctg aaggtaagac tgttattaac aaatatcttg accagcagca 
     4741 acaggctgat ttaaatgtta aagcggctca ttatgaggaa ttattgctac gcggtcaact 
     4801 tcattcgcgt gaggctagag aatctttgtc tcgtgagctt ttgaattaca ctcgtgcaaa 
     4861 tggacaaaag atttctaata aggttgcaga acgtactgct aataatctta tttatgccac 
     4921 taatgcagcg cattattatg aaggcactta taatatgtat cgcggacgaa aggcgaaaga 
     4981 agatgctgcc tctgatttca tgggaaatca atggcaaaat cagcttacgg gcgagatgct 
     5041 taattctaag cgctgggata atgaaatgca ggcttggcgt gaagctatta attctgctaa 
     5101 tgctttgctg cgtggttcgt ctgatgttat ggattcttac aatacttatg aaaacggtcg 
     5161 ctatgaacgt ggtcgtcctt atacgtctga ctatgaagaa tatgaacaat ttgataaagc 
     5221 gagaggtaca cgtcgtaaaa ctcgcaaata taaacgttaa atactatttc taactttttt 
     5281 atccatgtaa ttatagctct gttgtgaaac agggctattt ttgtatctat gcgaagcctt 
     5341 ttcttttgtg cgaagcaaat cgggtttcac atctaacccg attcaacccc ctctcgtccg 
     5401 aaatctgcaa aagtgacact aataataatg ctgttttatg ttgtataaca tataaaatag 
     5461 tttgtatgtg tctcaaatag ttcttatctt tgtagcacga aaaaggaaat agtattaatg 
     5521 ttttaaattg ttaaattatg aaaactaaaa gtgtaaaaga gtattggtat cttgttcgtt 
     5581 gtcattcaat tggtagagaa cctgaatatg atttggtttt gaaaactcgt agtgatatga 
     5641 agaagtacgt tatagagctt cgtaaggagt ggtcttttgt tgatgctggt agagttgatt 
     5701 tttcgatttg attttaatgc gctcgggcgg tggaccgctg gcttaaaccg ccccttcgcg 
     5761 catatttatt aaccatatat atttttaaag ttatgtattt attgatgaat gtacaaagta 
     5821 aagatggtgc gaaagcaagt gccccacaac tggtgaacac tgttaaggtg tccttatgcg 
     5881 aacttgtaga gcgtgagctt aagaaacagg aatgcgtagt cattttccag aagatagaag 
     5941 agtgcgacca gtcaggtgtt gaagtcaagt catttggcga gctgtagcac gctaggctgc 
     6001 acacaaaacg cctgtgcaca gcattgcaag aaaataattt tttctttttt ctttccgaca 
     6061 ttgcatcaca caggcgtttt gaataacttc accaagggtt attttattaa aaactgttaa 
     6121 atcttgcgcg tgcgtttacg cgcgtgcatt atttaaccgt ttttgataaa atgttcattg 
     6181 gt 
//
